Wall clock time and date at job start Tue Mar 31 2020 11:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47411 * 110.97659 * 2 1 4 4 C 1.52415 * 111.16270 * 211.22634 * 3 2 1 5 5 C 1.51233 * 113.07484 * 291.05266 * 4 3 2 6 6 N 1.47235 * 110.13507 * 63.31281 * 5 4 3 7 7 C 1.34770 * 121.16009 * 98.45954 * 6 5 4 8 8 O 1.21302 * 120.00121 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00211 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.46897 * 319.99497 * 9 7 6 11 11 N 1.46897 * 109.47224 * 200.00115 * 9 7 6 12 12 C 1.52990 * 109.47030 * 79.99978 * 9 7 6 13 13 C 1.52999 * 109.47181 * 185.00305 * 12 9 7 14 14 C 1.50700 * 109.47645 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99533 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99943 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 119.99957 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47835 * 90.00147 * 18 16 14 20 20 H 1.48506 * 109.47061 * 209.99971 * 18 16 14 21 21 H 1.48505 * 109.47245 * 329.99622 * 18 16 14 22 22 C 1.40333 * 117.68111 * 278.43876 * 6 5 4 23 23 C 1.38556 * 120.52496 * 247.10828 * 22 6 5 24 24 C 1.38348 * 119.67814 * 177.30193 * 23 22 6 25 25 C 1.38281 * 120.26210 * 0.25622 * 24 23 22 26 26 C 1.38323 * 120.28424 * 0.52018 * 25 24 23 27 27 C 1.38645 * 119.68842 * 0.02562 * 26 25 24 28 28 H 1.08992 * 109.46919 * 292.51073 * 1 2 3 29 29 H 1.08995 * 109.47110 * 52.51871 * 1 2 3 30 30 H 1.09005 * 109.46644 * 172.51677 * 1 2 3 31 31 H 1.09008 * 109.34007 * 90.70702 * 3 2 1 32 32 H 1.08990 * 109.03822 * 331.56108 * 3 2 1 33 33 H 1.09005 * 108.76326 * 170.12346 * 4 3 2 34 34 H 1.09003 * 108.76329 * 51.98242 * 4 3 2 35 35 H 1.08999 * 109.35806 * 303.10780 * 5 4 3 36 36 H 1.09002 * 109.36380 * 183.51644 * 5 4 3 37 37 H 1.00899 * 111.00288 * 300.00172 * 11 9 7 38 38 H 1.00910 * 111.00127 * 63.95029 * 11 9 7 39 39 H 1.09007 * 109.47325 * 304.99568 * 12 9 7 40 40 H 1.08995 * 109.47598 * 65.00661 * 12 9 7 41 41 H 1.09010 * 109.47108 * 299.99885 * 13 12 9 42 42 H 1.09001 * 109.47236 * 59.99759 * 13 12 9 43 43 H 0.97000 * 120.00204 * 179.97438 * 17 16 14 44 44 H 1.08002 * 120.16386 * 357.58494 * 23 22 6 45 45 H 1.08000 * 119.87104 * 180.22418 * 24 23 22 46 46 H 1.08003 * 119.85927 * 180.50762 * 25 24 23 47 47 H 1.07996 * 120.15499 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9968 1.3764 0.0000 4 6 3.3286 1.4551 -0.7369 5 6 4.4523 0.7543 -0.0066 6 7 4.1684 -0.6867 0.0970 7 6 4.7148 -1.5687 -0.7632 8 8 5.4545 -1.1798 -1.6424 9 6 4.4067 -3.0382 -0.6329 10 1 4.3890 -3.3135 0.4216 11 7 5.4409 -3.8186 -1.3253 12 6 3.0420 -3.3306 -1.2595 13 6 2.6732 -4.7957 -1.0176 14 6 1.3292 -5.0840 -1.6353 15 1 0.7917 -4.3006 -2.1487 16 6 0.7859 -6.3480 -1.5451 17 7 -0.3872 -6.5995 -2.0838 18 14 1.7161 -7.7033 -0.6578 19 1 1.3354 -7.7073 0.7776 20 1 1.3759 -9.0157 -1.2637 21 1 3.1765 -7.4645 -0.7819 22 6 3.3094 -1.1099 1.1228 23 6 3.7887 -1.8833 2.1678 24 6 2.9394 -2.2439 3.1987 25 6 1.6170 -1.8399 3.1858 26 6 1.1296 -1.0812 2.1369 27 6 1.9736 -0.7266 1.0956 28 1 -0.3633 0.3934 0.9493 29 1 -0.3633 0.6253 -0.8155 30 1 -0.3633 -1.0190 -0.1338 31 1 2.1378 1.7090 1.0285 32 1 1.2781 2.0327 -0.4906 33 1 3.5957 2.5038 -0.8675 34 1 3.2124 1.0003 -1.7207 35 1 4.5515 1.1758 0.9936 36 1 5.3846 0.9006 -0.5522 37 1 5.4774 -3.5814 -2.3053 38 1 6.3420 -3.6924 -0.8889 39 1 2.2884 -2.6867 -0.8059 40 1 3.0859 -3.1393 -2.3316 41 1 3.4268 -5.4397 -1.4711 42 1 2.6293 -4.9871 0.0546 43 1 -0.7693 -7.4888 -2.0206 44 1 4.8214 -2.1994 2.1798 45 1 3.3106 -2.8436 4.0166 46 1 0.9618 -2.1181 3.9980 47 1 0.0966 -0.7665 2.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424141674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:08 Heat of formation + Delta-G solvation = 9.700558 kcal Electronic energy + Delta-G solvation = -28467.108024 eV Core-core repulsion = 24842.901703 eV Total energy + Delta-G solvation = -3624.206321 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.10976 -39.15129 -37.02236 -35.85027 -35.18159 -32.73876 -32.44067 -30.41213 -30.29372 -29.13431 -27.31258 -26.24178 -25.17703 -23.73637 -22.36867 -21.77856 -20.67851 -19.99687 -19.36675 -17.70067 -17.01668 -16.61446 -16.38479 -15.84098 -15.45462 -15.18578 -14.91704 -14.55056 -14.37371 -14.09777 -14.06248 -13.85966 -13.38138 -13.27879 -13.03921 -12.65769 -12.50351 -12.28882 -12.10767 -11.95355 -11.65967 -11.55592 -11.47993 -11.11602 -11.08227 -10.87517 -10.75057 -10.36956 -9.81702 -9.72050 -9.49640 -9.44205 -9.27407 -9.00775 -8.59263 -8.41783 -8.29808 -7.87153 -5.92113 -3.88077 1.23839 1.31975 2.70985 2.97800 3.40613 3.47892 3.57330 3.57776 3.69880 4.55357 4.58293 4.64366 4.83719 4.84841 4.97552 4.97719 5.06605 5.13660 5.20332 5.27163 5.36709 5.43173 5.43844 5.47257 5.52655 5.54298 5.59619 5.73736 5.79037 5.86031 5.90055 6.07292 6.20530 6.21522 6.44167 6.50768 6.53807 6.65192 6.72327 6.88176 7.04312 7.12960 7.34640 7.48834 7.59132 7.71008 7.75021 7.95345 8.24237 8.67818 9.13756 9.71763 11.21558 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.005300 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.774795 B = 5282.180028 C = 5895.968753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.488 5.488 3 C 0.060 3.940 4 C -0.136 4.136 5 C 0.115 3.885 6 N -0.558 5.558 7 C 0.499 3.501 8 O -0.547 6.547 9 C 0.074 3.926 10 H 0.099 0.901 11 N -0.811 5.811 12 C -0.082 4.082 13 C -0.001 4.001 14 C -0.513 4.513 15 H 0.068 0.932 16 C 0.065 3.935 17 N -0.909 5.909 18 Si 0.876 3.124 19 H -0.280 1.280 20 H -0.291 1.291 21 H -0.260 1.260 22 C 0.130 3.870 23 C -0.106 4.106 24 C -0.124 4.124 25 C -0.096 4.096 26 C -0.152 4.152 27 C 0.106 3.894 28 H 0.036 0.964 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.044 0.956 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.349 0.651 38 H 0.333 0.667 39 H 0.066 0.934 40 H 0.054 0.946 41 H 0.031 0.969 42 H 0.006 0.994 43 H 0.260 0.740 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.125 0.875 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.564 17.429 11.601 21.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.204 5.204 3 C -0.066 4.066 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.287 5.287 7 C 0.287 3.713 8 O -0.424 6.424 9 C -0.041 4.041 10 H 0.117 0.883 11 N -0.339 5.339 12 C -0.120 4.120 13 C -0.039 4.039 14 C -0.551 4.551 15 H 0.086 0.914 16 C -0.135 4.135 17 N -0.548 5.548 18 Si 0.704 3.296 19 H -0.206 1.206 20 H -0.217 1.217 21 H -0.184 1.184 22 C 0.037 3.963 23 C -0.126 4.126 24 C -0.143 4.143 25 C -0.114 4.114 26 C -0.173 4.173 27 C 0.008 3.992 28 H 0.055 0.945 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.063 0.937 32 H 0.097 0.903 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.109 0.891 37 H 0.163 0.837 38 H 0.144 0.856 39 H 0.085 0.915 40 H 0.073 0.927 41 H 0.049 0.951 42 H 0.024 0.976 43 H 0.070 0.930 44 H 0.144 0.856 45 H 0.145 0.855 46 H 0.143 0.857 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 6.585 16.671 10.742 20.896 hybrid contribution 0.331 0.502 0.865 1.054 sum 6.916 17.173 11.607 21.851 Atomic orbital electron populations 1.22630 0.85391 1.04225 1.00559 1.59740 1.08961 1.13361 1.38348 1.22118 0.97089 0.87674 0.99705 1.21549 0.94081 1.00667 1.01205 1.21277 0.98911 0.79709 1.00802 1.45670 1.46071 1.07068 1.29882 1.22645 0.78241 0.90608 0.79769 1.90637 1.37534 1.80698 1.33563 1.21922 0.96340 0.84664 1.01182 0.88320 1.59066 1.08389 1.58572 1.07860 1.21398 0.90470 1.00692 0.99477 1.19453 0.97075 0.91335 0.95998 1.21170 1.02027 0.96885 1.35002 0.91376 1.24987 0.94714 0.98490 0.95283 1.69927 1.17265 1.21627 1.46017 0.86813 0.81616 0.81344 0.79838 1.20559 1.21688 1.18423 1.17147 0.88373 1.00583 0.90195 1.21119 1.00121 0.98628 0.92744 1.20986 0.93707 1.00882 0.98728 1.21070 0.95505 0.96761 0.98102 1.21374 1.00553 1.01890 0.93531 1.19103 0.92216 0.98458 0.89421 0.94541 0.90754 0.89694 0.93712 0.90263 0.90346 0.90420 0.91204 0.89121 0.83727 0.85563 0.91545 0.92731 0.95076 0.97586 0.93000 0.85593 0.85546 0.85719 0.85011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.43 60.07 0.51 0.73 16 2 N -0.49 -6.46 4.65 -178.57 -0.83 -7.29 16 3 C 0.06 0.62 5.38 -3.84 -0.02 0.60 16 4 C -0.14 -1.47 5.79 -27.92 -0.16 -1.63 16 5 C 0.11 1.36 5.80 -4.53 -0.03 1.33 16 6 N -0.56 -8.05 2.48 -113.81 -0.28 -8.33 16 7 C 0.50 8.46 6.87 -10.99 -0.08 8.38 16 8 O -0.55 -10.33 15.84 5.54 0.09 -10.24 16 9 C 0.07 1.32 2.46 -68.87 -0.17 1.15 16 10 H 0.10 1.69 5.70 -51.93 -0.30 1.39 16 11 N -0.81 -13.81 8.44 -5.66 -0.05 -13.86 16 12 C -0.08 -1.76 4.72 -26.74 -0.13 -1.89 16 13 C 0.00 -0.03 3.93 -27.88 -0.11 -0.14 16 14 C -0.51 -15.10 9.66 -34.44 -0.33 -15.43 16 15 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 16 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 17 N -0.91 -28.67 13.96 55.43 0.77 -27.90 16 18 Si 0.88 22.51 27.47 -169.99 -4.67 17.85 16 19 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 21 H -0.26 -6.52 6.54 56.52 0.37 -6.15 16 22 C 0.13 1.82 3.79 -83.56 -0.32 1.50 16 23 C -0.11 -1.34 8.11 -39.42 -0.32 -1.66 16 24 C -0.12 -1.42 10.04 -39.52 -0.40 -1.82 16 25 C -0.10 -1.10 10.04 -39.53 -0.40 -1.49 16 26 C -0.15 -1.89 8.98 -39.40 -0.35 -2.25 16 27 C 0.11 1.46 4.63 -83.29 -0.39 1.07 16 28 H 0.04 0.34 6.45 -51.93 -0.33 0.01 16 29 H 0.07 0.75 7.85 -51.93 -0.41 0.35 16 30 H 0.08 1.16 8.12 -51.93 -0.42 0.74 16 31 H 0.04 0.43 7.80 -51.92 -0.41 0.03 16 32 H 0.08 0.69 7.56 -51.93 -0.39 0.30 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 36 H 0.09 1.12 7.30 -51.93 -0.38 0.74 16 37 H 0.35 6.05 8.58 -39.29 -0.34 5.71 16 38 H 0.33 4.83 9.06 -39.29 -0.36 4.48 16 39 H 0.07 1.46 6.88 -51.93 -0.36 1.10 16 40 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.03 0.80 6.81 -51.92 -0.35 0.45 16 42 H 0.01 0.15 7.57 -51.93 -0.39 -0.25 16 43 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 44 H 0.13 1.43 7.76 -52.49 -0.41 1.03 16 45 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 47 H 0.13 1.42 5.79 -52.49 -0.30 1.11 16 LS Contribution 365.83 15.07 5.51 5.51 Total: -1.00 -34.51 365.83 -9.50 -44.01 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -7.26 Total: 9.92 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: -2.78 Total: -9.67 kcal Atomic # 7 Polarization: -56.99 SS G_CDS: -0.39 Total: -57.38 kcal Atomic # 8 Polarization: -10.33 SS G_CDS: 0.09 Total: -10.24 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -4.67 Total: 17.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.51 -9.50 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.714 kcal (2) G-P(sol) polarization free energy of solvation -34.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds