Wall clock time and date at job start Tue Mar 31 2020 11:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.47411 * 110.97659 * 2 1 4 4 C 1.52415 * 111.16270 * 211.22634 * 3 2 1 5 5 C 1.51233 * 113.07484 * 291.05266 * 4 3 2 6 6 N 1.47235 * 110.13507 * 63.31281 * 5 4 3 7 7 C 1.34770 * 121.16009 * 98.45954 * 6 5 4 8 8 O 1.21302 * 120.00121 * 359.97438 * 7 6 5 9 9 C 1.50702 * 120.00211 * 179.97438 * 7 6 5 10 10 H 1.08996 * 109.46897 * 319.99497 * 9 7 6 11 11 N 1.46897 * 109.47224 * 200.00115 * 9 7 6 12 12 C 1.52990 * 109.47030 * 79.99978 * 9 7 6 13 13 C 1.52999 * 109.47181 * 185.00305 * 12 9 7 14 14 C 1.50700 * 109.47645 * 180.02562 * 13 12 9 15 15 H 1.07994 * 119.99533 * 359.97438 * 14 13 12 16 16 C 1.37878 * 120.00226 * 179.97438 * 14 13 12 17 17 N 1.31515 * 119.99943 * 179.97438 * 16 14 13 18 18 Si 1.86793 * 119.99957 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47835 * 90.00147 * 18 16 14 20 20 H 1.48506 * 109.47061 * 209.99971 * 18 16 14 21 21 H 1.48505 * 109.47245 * 329.99622 * 18 16 14 22 22 C 1.40333 * 117.68111 * 278.43876 * 6 5 4 23 23 C 1.38556 * 120.52496 * 247.10828 * 22 6 5 24 24 C 1.38348 * 119.67814 * 177.30193 * 23 22 6 25 25 C 1.38281 * 120.26210 * 0.25622 * 24 23 22 26 26 C 1.38323 * 120.28424 * 0.52018 * 25 24 23 27 27 C 1.38645 * 119.68842 * 0.02562 * 26 25 24 28 28 H 1.08992 * 109.46919 * 292.51073 * 1 2 3 29 29 H 1.08995 * 109.47110 * 52.51871 * 1 2 3 30 30 H 1.09005 * 109.46644 * 172.51677 * 1 2 3 31 31 H 1.09008 * 109.34007 * 90.70702 * 3 2 1 32 32 H 1.08990 * 109.03822 * 331.56108 * 3 2 1 33 33 H 1.09005 * 108.76326 * 170.12346 * 4 3 2 34 34 H 1.09003 * 108.76329 * 51.98242 * 4 3 2 35 35 H 1.08999 * 109.35806 * 303.10780 * 5 4 3 36 36 H 1.09002 * 109.36380 * 183.51644 * 5 4 3 37 37 H 1.00899 * 111.00288 * 300.00172 * 11 9 7 38 38 H 1.00910 * 111.00127 * 63.95029 * 11 9 7 39 39 H 1.09007 * 109.47325 * 304.99568 * 12 9 7 40 40 H 1.08995 * 109.47598 * 65.00661 * 12 9 7 41 41 H 1.09010 * 109.47108 * 299.99885 * 13 12 9 42 42 H 1.09001 * 109.47236 * 59.99759 * 13 12 9 43 43 H 0.97000 * 120.00204 * 179.97438 * 17 16 14 44 44 H 1.08002 * 120.16386 * 357.58494 * 23 22 6 45 45 H 1.08000 * 119.87104 * 180.22418 * 24 23 22 46 46 H 1.08003 * 119.85927 * 180.50762 * 25 24 23 47 47 H 1.07996 * 120.15499 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9968 1.3764 0.0000 4 6 3.3286 1.4551 -0.7369 5 6 4.4523 0.7543 -0.0066 6 7 4.1684 -0.6867 0.0970 7 6 4.7148 -1.5687 -0.7632 8 8 5.4545 -1.1798 -1.6424 9 6 4.4067 -3.0382 -0.6329 10 1 4.3890 -3.3135 0.4216 11 7 5.4409 -3.8186 -1.3253 12 6 3.0420 -3.3306 -1.2595 13 6 2.6732 -4.7957 -1.0176 14 6 1.3292 -5.0840 -1.6353 15 1 0.7917 -4.3006 -2.1487 16 6 0.7859 -6.3480 -1.5451 17 7 -0.3872 -6.5995 -2.0838 18 14 1.7161 -7.7033 -0.6578 19 1 1.3354 -7.7073 0.7776 20 1 1.3759 -9.0157 -1.2637 21 1 3.1765 -7.4645 -0.7819 22 6 3.3094 -1.1099 1.1228 23 6 3.7887 -1.8833 2.1678 24 6 2.9394 -2.2439 3.1987 25 6 1.6170 -1.8399 3.1858 26 6 1.1296 -1.0812 2.1369 27 6 1.9736 -0.7266 1.0956 28 1 -0.3633 0.3934 0.9493 29 1 -0.3633 0.6253 -0.8155 30 1 -0.3633 -1.0190 -0.1338 31 1 2.1378 1.7090 1.0285 32 1 1.2781 2.0327 -0.4906 33 1 3.5957 2.5038 -0.8675 34 1 3.2124 1.0003 -1.7207 35 1 4.5515 1.1758 0.9936 36 1 5.3846 0.9006 -0.5522 37 1 5.4774 -3.5814 -2.3053 38 1 6.3420 -3.6924 -0.8889 39 1 2.2884 -2.6867 -0.8059 40 1 3.0859 -3.1393 -2.3316 41 1 3.4268 -5.4397 -1.4711 42 1 2.6293 -4.9871 0.0546 43 1 -0.7693 -7.4888 -2.0206 44 1 4.8214 -2.1994 2.1798 45 1 3.3106 -2.8436 4.0166 46 1 0.9618 -2.1181 3.9980 47 1 0.0966 -0.7665 2.1292 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424141674.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:07 Heat of formation + Delta-G solvation = -14.428928 kcal Electronic energy + Delta-G solvation = -28468.154357 eV Core-core repulsion = 24842.901703 eV Total energy + Delta-G solvation = -3625.252654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.18334 -40.32587 -37.94678 -37.06675 -36.67952 -34.81273 -33.42362 -32.32052 -31.23819 -30.12772 -28.72531 -27.52607 -26.26055 -25.18104 -23.55797 -22.87158 -21.97638 -21.46738 -20.50760 -19.13169 -18.54183 -18.13520 -17.43383 -17.00965 -16.85126 -16.28486 -16.09360 -15.80312 -15.65992 -15.54901 -15.16001 -14.91367 -14.76424 -14.69496 -14.28499 -14.11741 -13.93601 -13.59741 -13.43353 -13.01829 -12.86387 -12.80318 -12.64870 -12.45557 -12.40633 -12.04704 -12.00329 -11.88179 -11.75211 -11.62638 -11.35282 -11.16961 -10.70717 -10.38182 -10.33891 -9.77985 -9.49258 -8.82737 -8.24390 -6.27100 0.28039 0.39937 1.38048 1.38710 1.41915 1.56359 1.87747 2.41685 2.69349 2.76600 3.11558 3.37727 3.61057 3.80756 3.88656 3.93562 4.01587 4.11606 4.21769 4.24388 4.27189 4.32406 4.41855 4.50301 4.56437 4.59333 4.65634 4.70163 4.72977 4.78751 4.85030 4.90058 4.95644 5.12476 5.16748 5.24955 5.33262 5.45989 5.52104 5.58482 5.64397 5.71738 5.81481 5.97888 6.00402 6.15099 6.33531 6.43736 6.49911 6.79250 6.98034 7.36602 8.92588 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012141 B = 0.005300 C = 0.004748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2305.774795 B = 5282.180028 C = 5895.968753 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.515 5.515 3 C 0.061 3.939 4 C -0.131 4.131 5 C 0.110 3.890 6 N -0.550 5.550 7 C 0.497 3.503 8 O -0.573 6.573 9 C 0.085 3.915 10 H 0.111 0.889 11 N -0.816 5.816 12 C -0.067 4.067 13 C 0.011 3.989 14 C -0.526 4.526 15 H 0.024 0.976 16 C 0.007 3.993 17 N -0.953 5.953 18 Si 0.948 3.052 19 H -0.263 1.263 20 H -0.286 1.286 21 H -0.247 1.247 22 C 0.104 3.896 23 C -0.113 4.113 24 C -0.126 4.126 25 C -0.097 4.097 26 C -0.165 4.165 27 C 0.093 3.907 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.096 0.904 33 H 0.110 0.890 34 H 0.043 0.957 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.346 0.654 38 H 0.349 0.651 39 H 0.056 0.944 40 H 0.031 0.969 41 H 0.028 0.972 42 H 0.015 0.985 43 H 0.265 0.735 44 H 0.137 0.863 45 H 0.153 0.847 46 H 0.149 0.851 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.734 17.644 14.240 23.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.232 5.232 3 C -0.064 4.064 4 C -0.170 4.170 5 C -0.011 4.011 6 N -0.278 5.278 7 C 0.286 3.714 8 O -0.452 6.452 9 C -0.031 4.031 10 H 0.129 0.871 11 N -0.345 5.345 12 C -0.106 4.106 13 C -0.027 4.027 14 C -0.564 4.564 15 H 0.042 0.958 16 C -0.190 4.190 17 N -0.594 5.594 18 Si 0.771 3.229 19 H -0.187 1.187 20 H -0.212 1.212 21 H -0.170 1.170 22 C 0.012 3.988 23 C -0.133 4.133 24 C -0.145 4.145 25 C -0.115 4.115 26 C -0.186 4.186 27 C -0.005 4.005 28 H 0.078 0.922 29 H 0.103 0.897 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.102 0.898 37 H 0.159 0.841 38 H 0.163 0.837 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.046 0.954 42 H 0.033 0.967 43 H 0.074 0.926 44 H 0.155 0.845 45 H 0.171 0.829 46 H 0.167 0.833 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 7.752 16.925 13.412 22.944 hybrid contribution -0.145 0.513 0.023 0.534 sum 7.607 17.438 13.435 23.291 Atomic orbital electron populations 1.22573 0.84947 1.02691 1.02263 1.59743 1.09722 1.15006 1.38725 1.22184 0.97059 0.86558 1.00585 1.21539 0.94187 1.02074 0.99157 1.21496 0.98969 0.78376 1.02252 1.45642 1.45078 1.07843 1.29195 1.22339 0.78500 0.90579 0.80011 1.90622 1.38982 1.80979 1.34657 1.21645 0.94297 0.85830 1.01294 0.87086 1.59032 1.09222 1.58447 1.07815 1.21097 0.92856 0.98391 0.98245 1.19287 0.94301 0.93339 0.95748 1.21440 1.03795 0.96125 1.35004 0.95792 1.25949 0.95605 1.01297 0.96118 1.70078 1.19152 1.22599 1.47560 0.85685 0.80577 0.77541 0.79082 1.18740 1.21166 1.17039 1.17377 0.88632 1.02116 0.90702 1.21333 1.00955 0.98226 0.92747 1.21331 0.93541 1.00621 0.98987 1.21443 0.96036 0.95775 0.98294 1.21618 1.01058 1.02272 0.93661 1.19298 0.92428 0.98889 0.89899 0.92190 0.89709 0.92728 0.92381 0.88575 0.87145 0.93794 0.88766 0.89839 0.84089 0.83739 0.92516 0.95049 0.95363 0.96686 0.92642 0.84540 0.82943 0.83304 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 8.43 127.69 1.08 1.59 16 2 N -0.51 -13.51 4.65 -718.88 -3.34 -16.85 16 3 C 0.06 1.18 5.38 86.01 0.46 1.64 16 4 C -0.13 -2.68 5.79 29.82 0.17 -2.51 16 5 C 0.11 2.47 5.80 85.66 0.50 2.97 16 6 N -0.55 -15.52 2.48 -632.38 -1.57 -17.09 16 7 C 0.50 16.80 6.87 87.66 0.60 17.40 16 8 O -0.57 -21.75 15.84 -3.10 -0.05 -21.80 16 9 C 0.08 2.97 2.46 44.17 0.11 3.08 16 10 H 0.11 3.61 5.70 -2.39 -0.01 3.60 16 11 N -0.82 -27.09 8.44 -171.82 -1.45 -28.54 16 12 C -0.07 -2.95 4.72 30.59 0.14 -2.81 16 13 C 0.01 0.54 3.93 29.85 0.12 0.65 16 14 C -0.53 -31.81 9.66 25.60 0.25 -31.56 16 15 H 0.02 1.60 7.99 -2.91 -0.02 1.58 16 16 C 0.01 0.40 5.47 84.65 0.46 0.86 16 17 N -0.95 -61.36 13.96 21.45 0.30 -61.06 16 18 Si 0.95 45.89 27.47 68.60 1.88 47.77 16 19 H -0.26 -11.96 7.11 99.48 0.71 -11.26 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.25 -11.38 6.54 99.48 0.65 -10.72 16 22 C 0.10 2.80 3.79 38.04 0.14 2.94 16 23 C -0.11 -2.62 8.11 22.37 0.18 -2.44 16 24 C -0.13 -2.54 10.04 22.31 0.22 -2.31 16 25 C -0.10 -1.99 10.04 22.30 0.22 -1.76 16 26 C -0.17 -3.87 8.98 22.39 0.20 -3.67 16 27 C 0.09 2.48 4.63 37.98 0.18 2.65 16 28 H 0.06 1.06 6.45 -2.39 -0.02 1.05 16 29 H 0.08 1.71 7.85 -2.39 -0.02 1.69 16 30 H 0.05 1.56 8.12 -2.38 -0.02 1.54 16 31 H 0.06 0.98 7.80 -2.38 -0.02 0.97 16 32 H 0.10 1.50 7.56 -2.39 -0.02 1.49 16 33 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.09 1.66 8.08 -2.39 -0.02 1.64 16 36 H 0.08 2.00 7.30 -2.39 -0.02 1.98 16 37 H 0.35 11.96 8.58 -89.69 -0.77 11.19 16 38 H 0.35 9.62 9.06 -89.69 -0.81 8.81 16 39 H 0.06 2.58 6.88 -2.38 -0.02 2.56 16 40 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 41 H 0.03 1.43 6.81 -2.38 -0.02 1.41 16 42 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 43 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 44 H 0.14 2.79 7.76 -2.91 -0.02 2.77 16 45 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 46 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 47 H 0.14 2.88 5.79 -2.91 -0.02 2.86 16 Total: -1.00 -76.33 365.83 0.17 -76.16 By element: Atomic # 1 Polarization: 35.34 SS G_CDS: -0.65 Total: 34.69 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: 5.04 Total: -13.28 kcal Atomic # 7 Polarization: -117.48 SS G_CDS: -6.06 Total: -123.54 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -0.05 Total: -21.80 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 1.88 Total: 47.77 kcal Total: -76.33 0.17 -76.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141674.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.735 kcal (2) G-P(sol) polarization free energy of solvation -76.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds