Wall clock time and date at job start Tue Mar 31 2020 11:19:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46243 * 110.99945 * 2 1 4 4 C 1.52344 * 111.40511 * 211.70389 * 3 2 1 5 5 C 1.51249 * 113.11882 * 290.69027 * 4 3 2 6 6 N 1.47331 * 109.95196 * 62.99256 * 5 4 3 7 7 C 1.34778 * 121.18583 * 98.89411 * 6 5 4 8 8 O 1.21293 * 119.99851 * 174.79786 * 7 6 5 9 9 C 1.50699 * 119.99871 * 354.79341 * 7 6 5 10 10 H 1.08994 * 109.47255 * 30.59663 * 9 7 6 11 11 N 1.46898 * 109.46912 * 150.59712 * 9 7 6 12 12 C 1.53004 * 109.47103 * 270.59235 * 9 7 6 13 13 C 1.52997 * 109.46793 * 174.64658 * 12 9 7 14 14 C 1.50699 * 109.47025 * 180.02562 * 13 12 9 15 15 H 1.07998 * 120.00019 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00112 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99841 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47038 * 59.99947 * 18 16 14 20 20 H 1.48496 * 109.47152 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46915 * 300.00158 * 18 16 14 22 22 C 1.40157 * 117.62870 * 278.90830 * 6 5 4 23 23 C 1.38683 * 120.32492 * 246.97541 * 22 6 5 24 24 C 1.38293 * 119.75468 * 178.65181 * 23 22 6 25 25 C 1.38287 * 120.33728 * 359.90911 * 24 23 22 26 26 C 1.38344 * 120.19628 * 0.59716 * 25 24 23 27 27 C 1.38552 * 119.64964 * 0.02988 * 26 25 24 28 28 H 1.08996 * 109.47057 * 291.99216 * 1 2 3 29 29 H 1.09003 * 109.46604 * 51.98730 * 1 2 3 30 30 H 1.08993 * 109.47030 * 171.98844 * 1 2 3 31 31 H 1.08991 * 109.09461 * 332.20501 * 3 2 1 32 32 H 1.09006 * 109.08987 * 91.20900 * 3 2 1 33 33 H 1.08997 * 108.75489 * 169.75521 * 4 3 2 34 34 H 1.08999 * 108.75540 * 51.62850 * 4 3 2 35 35 H 1.08998 * 109.39094 * 302.84065 * 5 4 3 36 36 H 1.08999 * 109.39034 * 183.13589 * 5 4 3 37 37 H 1.00909 * 110.99583 * 296.04275 * 11 9 7 38 38 H 1.00894 * 111.00248 * 59.99800 * 11 9 7 39 39 H 1.08996 * 109.47128 * 294.64870 * 12 9 7 40 40 H 1.09001 * 109.46649 * 54.65270 * 12 9 7 41 41 H 1.09002 * 109.47374 * 300.00442 * 13 12 9 42 42 H 1.08999 * 109.47371 * 60.00161 * 13 12 9 43 43 H 0.97000 * 119.99711 * 180.02562 * 17 16 14 44 44 H 1.08000 * 120.11958 * 358.62791 * 23 22 6 45 45 H 1.08001 * 119.83164 * 179.91321 * 24 23 22 46 46 H 1.08003 * 119.90149 * 180.62731 * 25 24 23 47 47 H 1.08004 * 120.17276 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9932 1.3653 0.0000 4 6 3.3190 1.4519 -0.7454 5 6 4.4527 0.7588 -0.0231 6 7 4.1714 -0.6832 0.0875 7 6 4.7173 -1.5685 -0.7696 8 8 4.5477 -2.7579 -0.6027 9 6 5.5384 -1.0807 -1.9353 10 1 6.0321 -0.1469 -1.6665 11 7 6.5506 -2.0889 -2.2772 12 6 4.6248 -0.8464 -3.1400 13 6 5.4340 -0.2258 -4.2806 14 6 4.5341 0.0057 -5.4670 15 1 3.4895 -0.2634 -5.4131 16 6 5.0444 0.5600 -6.6217 17 7 6.3167 0.8862 -6.6879 18 14 3.9290 0.8462 -8.0926 19 1 2.8294 1.7672 -7.7082 20 1 4.7147 1.4475 -9.2000 21 1 3.3564 -0.4492 -8.5391 22 6 3.3155 -1.1014 1.1156 23 6 3.8014 -1.8717 2.1614 24 6 2.9527 -2.2544 3.1840 25 6 1.6240 -1.8714 3.1692 26 6 1.1305 -1.1118 2.1236 27 6 1.9743 -0.7372 1.0905 28 1 -0.3633 0.3848 0.9528 29 1 -0.3633 0.6329 -0.8097 30 1 -0.3633 -1.0176 -0.1432 31 1 1.2703 2.0247 -0.4803 32 1 2.1412 1.6903 1.0299 33 1 3.5783 2.5022 -0.8782 34 1 3.1989 0.9961 -1.7282 35 1 4.5599 1.1842 0.9747 36 1 5.3790 0.9051 -0.5788 37 1 7.2057 -2.2148 -1.5201 38 1 6.1178 -2.9645 -2.5302 39 1 4.2048 -1.7972 -3.4680 40 1 3.8175 -0.1706 -2.8577 41 1 5.8540 0.7251 -3.9526 42 1 6.2414 -0.9015 -4.5629 43 1 6.6756 1.2765 -7.5002 44 1 4.8388 -2.1718 2.1770 45 1 3.3296 -2.8554 3.9984 46 1 0.9698 -2.1657 3.9766 47 1 0.0928 -0.8125 2.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424141675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:12 Heat of formation + Delta-G solvation = 9.722823 kcal Electronic energy + Delta-G solvation = -27807.083733 eV Core-core repulsion = 24182.878377 eV Total energy + Delta-G solvation = -3624.205356 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.10414 -39.17215 -37.11326 -35.84499 -35.20353 -32.79348 -32.24081 -30.52373 -30.08834 -29.36105 -26.78223 -26.37655 -25.20322 -24.06889 -22.23064 -21.98940 -20.74775 -20.33238 -18.92870 -17.81769 -17.12078 -16.48220 -16.22436 -15.88668 -15.47222 -15.11282 -14.99848 -14.68037 -14.34563 -14.24821 -13.96803 -13.87209 -13.73264 -13.16547 -13.04021 -12.69849 -12.32144 -12.21839 -11.99775 -11.96093 -11.74486 -11.59811 -11.48687 -11.09840 -11.07535 -10.80669 -10.57453 -10.47488 -10.06506 -9.66686 -9.55111 -9.33394 -9.29056 -8.97814 -8.62218 -8.32623 -8.18199 -7.94346 -5.91312 -3.92894 1.17327 1.23385 2.77066 3.01512 3.37587 3.42076 3.44942 3.52041 3.62523 4.52069 4.64279 4.66808 4.75842 4.78900 4.89343 4.98566 5.02479 5.06132 5.13716 5.20327 5.31256 5.36121 5.37844 5.44240 5.47373 5.56190 5.61900 5.65971 5.76922 5.77713 5.92559 6.08920 6.14720 6.22230 6.34705 6.48352 6.60665 6.72816 6.81853 6.85241 7.13235 7.19034 7.38758 7.52156 7.78213 7.80367 7.99390 8.16229 8.35038 8.52122 9.14795 9.69944 11.19594 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.003843 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.833339 B = 7283.301321 C = 8230.906673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.492 5.492 3 C 0.063 3.937 4 C -0.150 4.150 5 C 0.110 3.890 6 N -0.562 5.562 7 C 0.493 3.507 8 O -0.540 6.540 9 C 0.081 3.919 10 H 0.097 0.903 11 N -0.808 5.808 12 C -0.094 4.094 13 C 0.034 3.966 14 C -0.520 4.520 15 H 0.051 0.949 16 C 0.059 3.941 17 N -0.893 5.893 18 Si 0.888 3.112 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.278 1.278 22 C 0.139 3.861 23 C -0.090 4.090 24 C -0.133 4.133 25 C -0.103 4.103 26 C -0.162 4.162 27 C 0.101 3.899 28 H 0.036 0.964 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.042 0.958 33 H 0.086 0.914 34 H 0.093 0.907 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.332 0.668 38 H 0.349 0.651 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.012 0.988 42 H 0.034 0.966 43 H 0.259 0.741 44 H 0.123 0.877 45 H 0.123 0.877 46 H 0.122 0.878 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.109 0.892 21.622 23.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.208 5.208 3 C -0.062 4.062 4 C -0.188 4.188 5 C -0.012 4.012 6 N -0.292 5.292 7 C 0.282 3.718 8 O -0.416 6.416 9 C -0.034 4.034 10 H 0.115 0.885 11 N -0.336 5.336 12 C -0.132 4.132 13 C -0.003 4.003 14 C -0.559 4.559 15 H 0.069 0.931 16 C -0.142 4.142 17 N -0.533 5.533 18 Si 0.716 3.284 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.203 1.203 22 C 0.046 3.954 23 C -0.110 4.110 24 C -0.152 4.152 25 C -0.122 4.122 26 C -0.183 4.183 27 C 0.004 3.996 28 H 0.055 0.945 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.060 0.940 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.091 0.909 36 H 0.115 0.885 37 H 0.144 0.856 38 H 0.163 0.837 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.030 0.970 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.141 0.859 45 H 0.141 0.859 46 H 0.140 0.860 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -7.665 0.650 20.419 21.819 hybrid contribution -1.400 -0.007 0.619 1.531 sum -9.065 0.643 21.038 22.917 Atomic orbital electron populations 1.22576 0.85856 1.03278 1.00819 1.59287 1.08524 1.14071 1.38909 1.21890 0.97582 0.87117 0.99638 1.21755 0.93567 1.01681 1.01843 1.21572 0.99183 0.79042 1.01358 1.45852 1.46288 1.07776 1.29313 1.22819 0.79543 0.86151 0.83302 1.90659 1.60601 1.16347 1.73964 1.21911 0.92711 0.96595 0.92200 0.88526 1.59030 1.17678 1.13895 1.42967 1.21708 0.96912 1.01058 0.93571 1.18996 0.95246 0.95589 0.90508 1.21238 0.95671 1.40655 0.98286 0.93063 1.24974 0.94908 0.95872 0.98484 1.69962 1.12430 1.43079 1.27790 0.86733 0.80702 0.78429 0.82546 1.20394 1.21369 1.20339 1.17245 0.88433 0.99685 0.90030 1.21142 1.00120 0.97320 0.92398 1.20973 0.93693 1.01514 0.99002 1.21021 0.95493 0.97693 0.98021 1.21270 1.00428 1.02680 0.93937 1.19200 0.92284 0.98594 0.89571 0.94542 0.90487 0.90786 0.90048 0.93958 0.89567 0.88910 0.90930 0.88489 0.85642 0.83687 0.92899 0.92311 0.96967 0.94788 0.93095 0.85859 0.85879 0.85980 0.85245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.41 60.07 0.51 0.72 16 2 N -0.49 -6.26 4.61 -179.53 -0.83 -7.09 16 3 C 0.06 0.68 5.34 -4.52 -0.02 0.66 16 4 C -0.15 -1.75 5.78 -27.95 -0.16 -1.91 16 5 C 0.11 1.29 5.65 -4.47 -0.03 1.27 16 6 N -0.56 -8.20 2.48 -113.75 -0.28 -8.49 16 7 C 0.49 8.49 6.78 -10.99 -0.07 8.41 16 8 O -0.54 -10.85 16.03 5.55 0.09 -10.76 16 9 C 0.08 1.41 2.66 -68.86 -0.18 1.23 16 10 H 0.10 1.55 5.82 -51.93 -0.30 1.25 16 11 N -0.81 -13.91 8.54 -5.66 -0.05 -13.96 16 12 C -0.09 -1.98 4.78 -26.73 -0.13 -2.10 16 13 C 0.03 0.86 4.86 -27.88 -0.14 0.73 16 14 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 17 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 18 Si 0.89 21.81 29.54 -169.99 -5.02 16.79 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C 0.14 2.00 4.82 -83.61 -0.40 1.59 16 23 C -0.09 -1.18 9.43 -39.40 -0.37 -1.55 16 24 C -0.13 -1.43 10.03 -39.54 -0.40 -1.83 16 25 C -0.10 -1.04 10.04 -39.52 -0.40 -1.44 16 26 C -0.16 -1.79 8.98 -39.43 -0.35 -2.14 16 27 C 0.10 1.34 5.17 -83.24 -0.43 0.91 16 28 H 0.04 0.29 6.49 -51.93 -0.34 -0.04 16 29 H 0.08 0.70 7.83 -51.93 -0.41 0.29 16 30 H 0.07 0.76 8.11 -51.93 -0.42 0.34 16 31 H 0.08 0.76 7.52 -51.93 -0.39 0.37 16 32 H 0.04 0.42 7.78 -51.93 -0.40 0.02 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.37 5.65 -51.93 -0.29 1.08 16 35 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.10 1.10 5.68 -51.93 -0.30 0.80 16 37 H 0.33 4.87 9.06 -39.29 -0.36 4.51 16 38 H 0.35 6.20 8.55 -39.29 -0.34 5.86 16 39 H 0.05 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.06 1.19 5.65 -51.93 -0.29 0.90 16 41 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.03 0.95 7.76 -51.93 -0.40 0.54 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 45 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 46 H 0.12 0.89 8.06 -52.48 -0.42 0.47 16 47 H 0.13 1.16 5.81 -52.48 -0.31 0.85 16 LS Contribution 367.55 15.07 5.54 5.54 Total: -1.00 -33.92 367.55 -9.85 -43.77 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: -7.04 Total: 9.22 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -2.99 Total: -8.91 kcal Atomic # 7 Polarization: -55.23 SS G_CDS: -0.42 Total: -55.65 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.09 Total: -10.76 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -33.92 -9.85 -43.77 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.491 kcal (2) G-P(sol) polarization free energy of solvation -33.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds