Wall clock time and date at job start Tue Mar 31 2020 11:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46908 * 1 3 3 C 1.46243 * 110.99945 * 2 1 4 4 C 1.52344 * 111.40511 * 211.70389 * 3 2 1 5 5 C 1.51249 * 113.11882 * 290.69027 * 4 3 2 6 6 N 1.47331 * 109.95196 * 62.99256 * 5 4 3 7 7 C 1.34778 * 121.18583 * 98.89411 * 6 5 4 8 8 O 1.21293 * 119.99851 * 174.79786 * 7 6 5 9 9 C 1.50699 * 119.99871 * 354.79341 * 7 6 5 10 10 H 1.08994 * 109.47255 * 30.59663 * 9 7 6 11 11 N 1.46898 * 109.46912 * 150.59712 * 9 7 6 12 12 C 1.53004 * 109.47103 * 270.59235 * 9 7 6 13 13 C 1.52997 * 109.46793 * 174.64658 * 12 9 7 14 14 C 1.50699 * 109.47025 * 180.02562 * 13 12 9 15 15 H 1.07998 * 120.00019 * 359.97438 * 14 13 12 16 16 C 1.37884 * 120.00112 * 180.02562 * 14 13 12 17 17 N 1.31511 * 119.99841 * 0.02562 * 16 14 13 18 18 Si 1.86803 * 120.00087 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47038 * 59.99947 * 18 16 14 20 20 H 1.48496 * 109.47152 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46915 * 300.00158 * 18 16 14 22 22 C 1.40157 * 117.62870 * 278.90830 * 6 5 4 23 23 C 1.38683 * 120.32492 * 246.97541 * 22 6 5 24 24 C 1.38293 * 119.75468 * 178.65181 * 23 22 6 25 25 C 1.38287 * 120.33728 * 359.90911 * 24 23 22 26 26 C 1.38344 * 120.19628 * 0.59716 * 25 24 23 27 27 C 1.38552 * 119.64964 * 0.02988 * 26 25 24 28 28 H 1.08996 * 109.47057 * 291.99216 * 1 2 3 29 29 H 1.09003 * 109.46604 * 51.98730 * 1 2 3 30 30 H 1.08993 * 109.47030 * 171.98844 * 1 2 3 31 31 H 1.08991 * 109.09461 * 332.20501 * 3 2 1 32 32 H 1.09006 * 109.08987 * 91.20900 * 3 2 1 33 33 H 1.08997 * 108.75489 * 169.75521 * 4 3 2 34 34 H 1.08999 * 108.75540 * 51.62850 * 4 3 2 35 35 H 1.08998 * 109.39094 * 302.84065 * 5 4 3 36 36 H 1.08999 * 109.39034 * 183.13589 * 5 4 3 37 37 H 1.00909 * 110.99583 * 296.04275 * 11 9 7 38 38 H 1.00894 * 111.00248 * 59.99800 * 11 9 7 39 39 H 1.08996 * 109.47128 * 294.64870 * 12 9 7 40 40 H 1.09001 * 109.46649 * 54.65270 * 12 9 7 41 41 H 1.09002 * 109.47374 * 300.00442 * 13 12 9 42 42 H 1.08999 * 109.47371 * 60.00161 * 13 12 9 43 43 H 0.97000 * 119.99711 * 180.02562 * 17 16 14 44 44 H 1.08000 * 120.11958 * 358.62791 * 23 22 6 45 45 H 1.08001 * 119.83164 * 179.91321 * 24 23 22 46 46 H 1.08003 * 119.90149 * 180.62731 * 25 24 23 47 47 H 1.08004 * 120.17276 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9932 1.3653 0.0000 4 6 3.3190 1.4519 -0.7454 5 6 4.4527 0.7588 -0.0231 6 7 4.1714 -0.6832 0.0875 7 6 4.7173 -1.5685 -0.7696 8 8 4.5477 -2.7579 -0.6027 9 6 5.5384 -1.0807 -1.9353 10 1 6.0321 -0.1469 -1.6665 11 7 6.5506 -2.0889 -2.2772 12 6 4.6248 -0.8464 -3.1400 13 6 5.4340 -0.2258 -4.2806 14 6 4.5341 0.0057 -5.4670 15 1 3.4895 -0.2634 -5.4131 16 6 5.0444 0.5600 -6.6217 17 7 6.3167 0.8862 -6.6879 18 14 3.9290 0.8462 -8.0926 19 1 2.8294 1.7672 -7.7082 20 1 4.7147 1.4475 -9.2000 21 1 3.3564 -0.4492 -8.5391 22 6 3.3155 -1.1014 1.1156 23 6 3.8014 -1.8717 2.1614 24 6 2.9527 -2.2544 3.1840 25 6 1.6240 -1.8714 3.1692 26 6 1.1305 -1.1118 2.1236 27 6 1.9743 -0.7372 1.0905 28 1 -0.3633 0.3848 0.9528 29 1 -0.3633 0.6329 -0.8097 30 1 -0.3633 -1.0176 -0.1432 31 1 1.2703 2.0247 -0.4803 32 1 2.1412 1.6903 1.0299 33 1 3.5783 2.5022 -0.8782 34 1 3.1989 0.9961 -1.7282 35 1 4.5599 1.1842 0.9747 36 1 5.3790 0.9051 -0.5788 37 1 7.2057 -2.2148 -1.5201 38 1 6.1178 -2.9645 -2.5302 39 1 4.2048 -1.7972 -3.4680 40 1 3.8175 -0.1706 -2.8577 41 1 5.8540 0.7251 -3.9526 42 1 6.2414 -0.9015 -4.5629 43 1 6.6756 1.2765 -7.5002 44 1 4.8388 -2.1718 2.1770 45 1 3.3296 -2.8554 3.9984 46 1 0.9698 -2.1657 3.9766 47 1 0.0928 -0.8125 2.1126 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424141675.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:11 Heat of formation + Delta-G solvation = -13.175452 kcal Electronic energy + Delta-G solvation = -27808.076676 eV Core-core repulsion = 24182.878377 eV Total energy + Delta-G solvation = -3625.198299 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.15383 -40.34213 -37.99283 -36.95856 -36.80981 -34.83220 -33.18317 -31.96973 -31.43167 -30.29269 -28.19037 -27.58300 -26.09780 -25.72175 -23.48658 -22.99816 -22.09675 -21.54710 -20.15768 -18.94365 -18.50346 -18.10195 -17.40541 -16.96267 -16.89656 -16.49945 -16.10040 -15.89938 -15.73012 -15.29733 -15.15139 -14.94573 -14.80744 -14.39372 -14.25614 -14.01015 -13.79723 -13.55815 -13.40862 -13.00298 -12.86778 -12.80423 -12.57823 -12.56279 -12.39022 -12.26726 -12.14185 -11.83770 -11.73475 -11.40611 -11.24540 -11.01261 -10.46882 -10.41952 -10.30123 -9.73183 -9.53244 -8.84643 -8.12565 -6.22373 0.26894 0.36119 1.40733 1.43495 1.44597 1.52384 1.89891 2.45306 2.67896 2.76514 3.20222 3.45461 3.65273 3.75016 3.83612 3.91197 3.99150 4.12713 4.20265 4.25434 4.30982 4.34855 4.36785 4.46615 4.54982 4.57679 4.64338 4.75504 4.77987 4.84475 4.89144 4.92343 4.94367 5.16235 5.27279 5.33141 5.42651 5.50104 5.57600 5.60520 5.84203 5.85291 5.98847 6.01970 6.02987 6.22519 6.31770 6.34733 6.46988 6.94438 7.06784 7.45160 8.98394 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.003843 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.833339 B = 7283.301321 C = 8230.906673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.519 5.519 3 C 0.065 3.935 4 C -0.148 4.148 5 C 0.104 3.896 6 N -0.553 5.553 7 C 0.495 3.505 8 O -0.575 6.575 9 C 0.091 3.909 10 H 0.112 0.888 11 N -0.817 5.817 12 C -0.077 4.077 13 C 0.046 3.954 14 C -0.543 4.543 15 H 0.050 0.950 16 C 0.006 3.994 17 N -0.927 5.927 18 Si 0.956 3.044 19 H -0.265 1.265 20 H -0.282 1.282 21 H -0.274 1.274 22 C 0.104 3.896 23 C -0.106 4.106 24 C -0.134 4.134 25 C -0.096 4.096 26 C -0.163 4.163 27 C 0.089 3.911 28 H 0.059 0.941 29 H 0.082 0.918 30 H 0.065 0.935 31 H 0.095 0.905 32 H 0.054 0.946 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.347 0.653 38 H 0.345 0.655 39 H 0.032 0.968 40 H 0.065 0.935 41 H -0.002 1.002 42 H 0.005 0.995 43 H 0.262 0.738 44 H 0.115 0.885 45 H 0.147 0.853 46 H 0.156 0.844 47 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.062 1.807 23.204 25.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.236 5.236 3 C -0.060 4.060 4 C -0.186 4.186 5 C -0.017 4.017 6 N -0.281 5.281 7 C 0.283 3.717 8 O -0.454 6.454 9 C -0.025 4.025 10 H 0.130 0.870 11 N -0.346 5.346 12 C -0.116 4.116 13 C 0.009 3.991 14 C -0.581 4.581 15 H 0.069 0.931 16 C -0.192 4.192 17 N -0.567 5.567 18 Si 0.781 3.219 19 H -0.190 1.190 20 H -0.207 1.207 21 H -0.199 1.199 22 C 0.012 3.988 23 C -0.126 4.126 24 C -0.153 4.153 25 C -0.114 4.114 26 C -0.184 4.184 27 C -0.009 4.009 28 H 0.077 0.923 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.113 0.887 32 H 0.073 0.927 33 H 0.126 0.874 34 H 0.076 0.924 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.051 0.949 40 H 0.084 0.916 41 H 0.016 0.984 42 H 0.023 0.977 43 H 0.071 0.929 44 H 0.133 0.867 45 H 0.165 0.835 46 H 0.174 0.826 47 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -9.632 1.600 22.034 24.101 hybrid contribution -0.809 -0.283 0.203 0.881 sum -10.441 1.317 22.237 24.602 Atomic orbital electron populations 1.22611 0.84448 1.03113 1.02294 1.59273 1.10070 1.14979 1.39249 1.21911 0.97181 0.86660 1.00269 1.21751 0.94358 1.02540 0.99971 1.21802 0.99329 0.77674 1.02863 1.45780 1.45322 1.08408 1.28605 1.22518 0.79614 0.85937 0.83596 1.90630 1.62058 1.17731 1.75006 1.21675 0.92319 0.97410 0.91081 0.87026 1.59010 1.17989 1.13634 1.43946 1.21393 0.97012 0.99573 0.93581 1.18770 0.94504 0.94341 0.91504 1.21635 0.96039 1.40818 0.99582 0.93137 1.25839 0.96400 0.95439 1.01537 1.70087 1.14200 1.43701 1.28754 0.85640 0.78930 0.78580 0.78712 1.19023 1.20715 1.19907 1.17538 0.89228 1.01589 0.90486 1.21245 1.00344 0.97756 0.93268 1.21292 0.93934 1.01236 0.98849 1.21439 0.95482 0.96180 0.98344 1.21581 1.01190 1.02267 0.93396 1.19375 0.92099 0.99053 0.90394 0.92288 0.89888 0.91597 0.88652 0.92731 0.87363 0.92384 0.88515 0.88432 0.83973 0.84181 0.94941 0.91648 0.98355 0.97698 0.92883 0.86716 0.83486 0.82635 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.41 127.69 1.07 1.47 16 2 N -0.52 -12.56 4.61 -721.92 -3.33 -15.89 16 3 C 0.06 1.29 5.34 86.21 0.46 1.75 16 4 C -0.15 -3.32 5.78 29.81 0.17 -3.14 16 5 C 0.10 2.37 5.65 85.65 0.48 2.85 16 6 N -0.55 -16.14 2.48 -632.19 -1.57 -17.71 16 7 C 0.49 17.43 6.78 87.66 0.59 18.02 16 8 O -0.58 -23.83 16.03 -3.07 -0.05 -23.88 16 9 C 0.09 3.24 2.66 44.17 0.12 3.36 16 10 H 0.11 3.63 5.82 -2.39 -0.01 3.61 16 11 N -0.82 -29.10 8.54 -171.81 -1.47 -30.57 16 12 C -0.08 -3.36 4.78 30.59 0.15 -3.21 16 13 C 0.05 2.44 4.86 29.85 0.15 2.58 16 14 C -0.54 -31.36 9.11 25.60 0.23 -31.12 16 15 H 0.05 2.86 7.74 -2.91 -0.02 2.83 16 16 C 0.01 0.34 5.46 84.66 0.46 0.80 16 17 N -0.93 -56.53 13.29 21.45 0.28 -56.25 16 18 Si 0.96 44.80 29.54 68.60 2.03 46.82 16 19 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 20 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 21 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 22 C 0.10 2.93 4.82 38.10 0.18 3.12 16 23 C -0.11 -2.72 9.43 22.39 0.21 -2.51 16 24 C -0.13 -2.62 10.03 22.29 0.22 -2.39 16 25 C -0.10 -1.62 10.04 22.31 0.22 -1.40 16 26 C -0.16 -3.17 8.98 22.37 0.20 -2.96 16 27 C 0.09 2.22 5.17 37.92 0.20 2.42 16 28 H 0.06 0.78 6.49 -2.39 -0.02 0.76 16 29 H 0.08 1.36 7.83 -2.39 -0.02 1.34 16 30 H 0.07 1.27 8.11 -2.39 -0.02 1.25 16 31 H 0.10 1.58 7.52 -2.39 -0.02 1.56 16 32 H 0.05 0.95 7.78 -2.38 -0.02 0.93 16 33 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 34 H 0.06 1.73 5.65 -2.39 -0.01 1.72 16 35 H 0.10 1.74 8.08 -2.39 -0.02 1.72 16 36 H 0.10 2.16 5.68 -2.39 -0.01 2.15 16 37 H 0.35 10.40 9.06 -89.69 -0.81 9.59 16 38 H 0.34 12.80 8.55 -89.70 -0.77 12.04 16 39 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.07 2.74 5.65 -2.39 -0.01 2.73 16 41 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 42 H 0.00 0.27 7.76 -2.39 -0.02 0.25 16 43 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.11 3.02 8.06 -2.91 -0.02 2.99 16 45 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 46 H 0.16 1.57 8.06 -2.91 -0.02 1.54 16 47 H 0.15 2.17 5.81 -2.91 -0.02 2.15 16 Total: -1.00 -74.62 367.55 0.45 -74.17 By element: Atomic # 1 Polarization: 34.25 SS G_CDS: -0.58 Total: 33.67 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 5.13 Total: -10.37 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -6.08 Total: -120.41 kcal Atomic # 8 Polarization: -23.83 SS G_CDS: -0.05 Total: -23.88 kcal Atomic # 14 Polarization: 44.80 SS G_CDS: 2.03 Total: 46.82 kcal Total: -74.62 0.45 -74.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424141675.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.999 kcal (2) G-P(sol) polarization free energy of solvation -74.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.623 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds