Wall clock time and date at job start Tue Mar 31 2020 11:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46135 * 110.99910 * 2 1 4 4 C 1.50997 * 113.76526 * 305.61466 * 3 2 1 5 5 N 1.47337 * 110.15640 * 296.07808 * 4 3 2 6 6 C 1.34772 * 121.15699 * 262.47630 * 5 4 3 7 7 O 1.21289 * 120.00255 * 174.61667 * 6 5 4 8 8 C 1.50703 * 119.99887 * 354.62419 * 6 5 4 9 9 H 1.08997 * 109.47125 * 329.04793 * 8 6 5 10 10 N 1.46908 * 109.46633 * 209.05247 * 8 6 5 11 11 C 1.52993 * 109.47266 * 89.05459 * 8 6 5 12 12 C 1.53005 * 109.47297 * 185.20307 * 11 8 6 13 13 C 1.50692 * 109.47267 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00466 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00050 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47004 * 59.99731 * 17 15 13 19 19 H 1.48501 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46853 * 299.99938 * 17 15 13 21 21 C 1.39942 * 117.68904 * 82.45318 * 5 4 3 22 22 C 1.38822 * 120.56909 * 112.74860 * 21 5 4 23 23 C 1.38175 * 119.67371 * 182.40971 * 22 21 5 24 24 C 1.38308 * 120.24581 * 359.75899 * 23 22 21 25 25 C 1.38427 * 120.14057 * 359.35286 * 24 23 22 26 26 C 1.37841 * 119.69976 * 0.52556 * 25 24 23 27 27 C 1.46410 * 111.00358 * 233.49390 * 2 1 3 28 28 H 1.09005 * 109.46854 * 190.45680 * 1 2 3 29 29 H 1.08998 * 109.47540 * 310.45923 * 1 2 3 30 30 H 1.09007 * 109.46716 * 70.46290 * 1 2 3 31 31 H 1.08995 * 108.62322 * 66.72376 * 3 2 1 32 32 H 1.09000 * 108.62403 * 184.64574 * 3 2 1 33 33 H 1.09003 * 109.36092 * 56.28773 * 4 3 2 34 34 H 1.09004 * 109.35759 * 176.00818 * 4 3 2 35 35 H 1.00901 * 110.99113 * 176.04604 * 10 8 6 36 36 H 1.00896 * 110.99814 * 299.99633 * 10 8 6 37 37 H 1.09003 * 109.47357 * 305.20162 * 11 8 6 38 38 H 1.09000 * 109.47544 * 65.20504 * 11 8 6 39 39 H 1.09003 * 109.46798 * 300.00196 * 12 11 8 40 40 H 1.09000 * 109.46663 * 59.99657 * 12 11 8 41 41 H 0.96992 * 120.00043 * 179.97438 * 16 15 13 42 42 H 1.07999 * 120.16854 * 2.39289 * 22 21 5 43 43 H 1.07999 * 119.88518 * 179.73483 * 23 22 21 44 44 H 1.07997 * 119.93327 * 179.37020 * 24 23 22 45 45 H 1.07997 * 120.15008 * 180.80808 * 25 24 23 46 46 H 1.09002 * 109.51576 * 279.00743 * 27 2 1 47 47 H 1.09000 * 109.51404 * 158.83645 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9927 1.3643 0.0000 4 6 1.4594 2.2208 -1.1234 5 7 1.8904 1.6784 -2.4238 6 6 2.9646 2.1781 -3.0662 7 8 3.3594 1.6538 -4.0862 8 6 3.6754 3.3882 -2.5172 9 1 2.9596 4.0257 -1.9982 10 7 4.2889 4.1386 -3.6212 11 6 4.7629 2.9406 -1.5386 12 6 5.3971 4.1695 -0.8837 13 6 6.4678 3.7285 0.0806 14 1 6.6757 2.6770 0.2130 15 6 7.1829 4.6675 0.7933 16 7 6.9309 5.9481 0.6311 17 14 8.5107 4.1210 1.9882 18 1 9.5522 3.3573 1.2553 19 1 9.1261 5.3137 2.6238 20 1 7.9089 3.2575 3.0358 21 6 1.1459 0.6261 -2.9685 22 6 0.4041 0.8118 -4.1272 23 6 -0.3638 -0.2252 -4.6212 24 6 -0.3908 -1.4444 -3.9688 25 6 0.3627 -1.6367 -2.8236 26 6 1.1314 -0.6043 -2.3305 27 6 1.9938 -0.8131 -1.0986 28 1 -0.3633 -1.0107 0.1865 29 1 -0.3634 0.6668 0.7819 30 1 -0.3633 0.3437 -0.9686 31 1 1.7364 1.8355 0.9488 32 1 3.0786 1.3203 -0.0837 33 1 0.3703 2.2353 -1.0811 34 1 1.8387 3.2369 -1.0145 35 1 4.7168 4.9888 -3.2865 36 1 4.9569 3.5688 -4.1183 37 1 4.3214 2.3065 -0.7698 38 1 5.5277 2.3804 -2.0766 39 1 5.8387 4.8036 -1.6525 40 1 4.6323 4.7297 -0.3457 41 1 7.4337 6.6087 1.1327 42 1 0.4269 1.7621 -4.6398 43 1 -0.9456 -0.0832 -5.5200 44 1 -1.0007 -2.2483 -4.3537 45 1 0.3519 -2.5928 -2.3213 46 1 1.9741 -1.8653 -0.8146 47 1 3.0187 -0.5129 -1.3165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424151732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:33 Heat of formation + Delta-G solvation = 5.982131 kcal Electronic energy + Delta-G solvation = -27924.896357 eV Core-core repulsion = 24300.528793 eV Total energy + Delta-G solvation = -3624.367564 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27753 -38.97897 -37.56089 -35.61059 -35.10158 -32.89896 -32.01292 -30.74627 -29.96008 -28.52703 -27.51485 -26.52156 -25.04343 -24.25468 -22.62968 -21.93246 -20.76174 -20.37937 -18.92758 -17.73695 -17.21781 -16.37986 -16.11095 -15.78625 -15.65780 -15.16165 -14.91509 -14.58911 -14.46190 -14.30286 -14.15530 -13.84941 -13.58663 -13.17248 -12.97502 -12.82062 -12.47472 -12.19962 -12.16779 -12.03405 -11.86076 -11.57574 -11.45977 -11.38953 -11.26804 -10.98180 -10.91688 -10.70375 -9.99539 -9.91921 -9.49951 -9.33178 -9.26929 -9.01018 -8.54622 -8.45673 -8.32352 -8.26995 -6.10546 -4.13770 1.09759 1.21817 2.76287 2.83662 3.28040 3.32839 3.35536 3.51552 3.96391 4.37919 4.55250 4.62013 4.68546 4.80955 4.88526 4.97695 5.02788 5.11170 5.16999 5.24040 5.25641 5.28323 5.37622 5.43482 5.50445 5.56799 5.62935 5.70239 5.71856 5.81799 5.87390 5.88766 6.16197 6.28087 6.31724 6.38403 6.44295 6.49667 6.81338 6.88254 6.95668 6.96634 7.26040 7.45966 7.48600 7.58015 7.82037 7.86261 8.27533 8.30516 8.91699 9.51442 11.00264 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.003733 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.826593 B = 7497.871699 C = 8376.381100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.529 5.529 3 C 0.026 3.974 4 C 0.074 3.926 5 N -0.576 5.576 6 C 0.533 3.467 7 O -0.523 6.523 8 C 0.076 3.924 9 H 0.097 0.903 10 N -0.832 5.832 11 C -0.140 4.140 12 C 0.027 3.973 13 C -0.524 4.524 14 H 0.054 0.946 15 C 0.060 3.940 16 N -0.893 5.893 17 Si 0.892 3.108 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.154 3.846 22 C -0.108 4.108 23 C -0.112 4.112 24 C -0.124 4.124 25 C -0.102 4.102 26 C -0.119 4.119 27 C 0.098 3.902 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.035 0.965 31 H 0.094 0.906 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.102 0.898 35 H 0.356 0.644 36 H 0.347 0.653 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.017 0.983 40 H 0.018 0.982 41 H 0.262 0.738 42 H 0.123 0.877 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.126 0.874 46 H 0.085 0.915 47 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.061 -11.488 -4.548 21.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.250 5.250 3 C -0.103 4.103 4 C -0.050 4.050 5 N -0.307 5.307 6 C 0.323 3.677 7 O -0.396 6.396 8 C -0.038 4.038 9 H 0.115 0.885 10 N -0.365 5.365 11 C -0.180 4.180 12 C -0.010 4.010 13 C -0.562 4.562 14 H 0.072 0.928 15 C -0.142 4.142 16 N -0.532 5.532 17 Si 0.720 3.280 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.201 1.201 21 C 0.063 3.937 22 C -0.128 4.128 23 C -0.131 4.131 24 C -0.142 4.142 25 C -0.122 4.122 26 C -0.122 4.122 27 C -0.030 4.030 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.053 0.947 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.096 0.904 34 H 0.121 0.879 35 H 0.172 0.828 36 H 0.160 0.840 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.036 0.964 40 H 0.037 0.963 41 H 0.072 0.928 42 H 0.141 0.859 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.144 0.856 46 H 0.104 0.896 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.298 -11.687 -4.888 21.441 hybrid contribution 1.337 0.049 0.449 1.411 sum -15.961 -11.638 -4.439 20.246 Atomic orbital electron populations 1.22446 0.87448 1.02381 1.00610 1.61726 1.08162 1.12299 1.42772 1.22316 1.01828 0.87923 0.98198 1.22221 1.00742 0.99625 0.82371 1.45827 1.28825 1.34271 1.21787 1.21046 0.78513 0.84916 0.83204 1.90663 1.64169 1.60422 1.24389 1.21530 0.97429 0.92387 0.92488 0.88508 1.58792 1.41527 1.09952 1.26184 1.22482 0.96283 1.01883 0.97319 1.19078 0.95465 0.91229 0.95224 1.21114 1.18767 0.92916 1.23413 0.92754 1.24995 0.97257 0.94898 0.97023 1.69932 1.41317 1.00111 1.41833 0.86652 0.82024 0.78045 0.81293 1.20231 1.21228 1.20130 1.17413 0.94170 0.87673 0.94484 1.21244 0.95707 0.99774 0.96044 1.21027 0.99214 0.93016 0.99833 1.21180 0.99810 0.97358 0.95836 1.20886 0.96698 0.98147 0.96423 1.20847 0.99389 0.92767 0.99199 1.21367 0.97513 0.98875 0.85229 0.91473 0.91441 0.94693 0.88805 0.89243 0.90361 0.87949 0.82813 0.84013 0.92214 0.92546 0.96446 0.96335 0.92809 0.85910 0.85827 0.85925 0.85635 0.89646 0.89998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 8.28 60.06 0.50 0.68 16 2 N -0.53 -6.12 5.05 -246.02 -1.24 -7.37 16 3 C 0.03 0.32 5.41 -5.25 -0.03 0.29 16 4 C 0.07 0.88 5.32 -4.59 -0.02 0.85 16 5 N -0.58 -8.23 2.33 -114.02 -0.27 -8.49 16 6 C 0.53 9.14 6.76 -10.99 -0.07 9.06 16 7 O -0.52 -10.59 16.22 5.55 0.09 -10.50 16 8 C 0.08 1.29 2.53 -68.86 -0.17 1.12 16 9 H 0.10 1.52 6.10 -51.93 -0.32 1.21 16 10 N -0.83 -14.17 9.02 -5.65 -0.05 -14.22 16 11 C -0.14 -2.70 4.78 -26.73 -0.13 -2.83 16 12 C 0.03 0.64 4.74 -27.88 -0.13 0.51 16 13 C -0.52 -14.07 9.11 -34.44 -0.31 -14.39 16 14 H 0.05 1.44 7.74 -52.49 -0.41 1.04 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.89 -25.60 13.29 55.43 0.74 -24.86 16 17 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 21 C 0.15 2.13 4.09 -83.80 -0.34 1.78 16 22 C -0.11 -1.42 9.67 -39.39 -0.38 -1.80 16 23 C -0.11 -1.19 10.03 -39.58 -0.40 -1.59 16 24 C -0.12 -1.19 10.05 -39.49 -0.40 -1.59 16 25 C -0.10 -1.05 9.69 -39.66 -0.38 -1.43 16 26 C -0.12 -1.45 3.29 -104.08 -0.34 -1.79 16 27 C 0.10 1.18 5.76 -4.69 -0.03 1.16 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.58 8.07 -51.93 -0.42 0.16 16 30 H 0.03 0.37 5.01 -51.93 -0.26 0.10 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.09 1.27 5.35 -51.93 -0.28 1.00 16 33 H 0.08 0.82 6.66 -51.93 -0.35 0.47 16 34 H 0.10 1.20 5.65 -51.93 -0.29 0.91 16 35 H 0.36 6.02 7.56 -39.29 -0.30 5.72 16 36 H 0.35 6.05 8.55 -39.29 -0.34 5.72 16 37 H 0.06 1.10 5.54 -51.93 -0.29 0.81 16 38 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.02 0.43 6.87 -51.93 -0.36 0.07 16 40 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 42 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 44 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.13 1.01 7.99 -52.49 -0.42 0.59 16 46 H 0.09 0.90 7.94 -51.93 -0.41 0.48 16 47 H 0.08 1.17 7.70 -51.93 -0.40 0.77 16 LS Contribution 363.53 15.07 5.48 5.48 Total: -1.00 -31.09 363.53 -9.95 -41.04 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -6.92 Total: 11.29 kcal Atomic # 6 Polarization: -5.67 SS G_CDS: -2.75 Total: -8.42 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.82 Total: -54.94 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: 0.09 Total: -10.50 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.09 -9.95 -41.04 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.022 kcal (2) G-P(sol) polarization free energy of solvation -31.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds