Wall clock time and date at job start Tue Mar 31 2020 11:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46135 * 110.99910 * 2 1 4 4 C 1.50997 * 113.76526 * 305.61466 * 3 2 1 5 5 N 1.47337 * 110.15640 * 296.07808 * 4 3 2 6 6 C 1.34772 * 121.15699 * 262.47630 * 5 4 3 7 7 O 1.21289 * 120.00255 * 174.61667 * 6 5 4 8 8 C 1.50703 * 119.99887 * 354.62419 * 6 5 4 9 9 H 1.08997 * 109.47125 * 329.04793 * 8 6 5 10 10 N 1.46908 * 109.46633 * 209.05247 * 8 6 5 11 11 C 1.52993 * 109.47266 * 89.05459 * 8 6 5 12 12 C 1.53005 * 109.47297 * 185.20307 * 11 8 6 13 13 C 1.50692 * 109.47267 * 179.97438 * 12 11 8 14 14 H 1.08001 * 120.00466 * 0.02562 * 13 12 11 15 15 C 1.37880 * 119.99952 * 179.97438 * 13 12 11 16 16 N 1.31516 * 120.00050 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 120.00072 * 180.02562 * 15 13 12 18 18 H 1.48495 * 109.47004 * 59.99731 * 17 15 13 19 19 H 1.48501 * 109.47190 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.46853 * 299.99938 * 17 15 13 21 21 C 1.39942 * 117.68904 * 82.45318 * 5 4 3 22 22 C 1.38822 * 120.56909 * 112.74860 * 21 5 4 23 23 C 1.38175 * 119.67371 * 182.40971 * 22 21 5 24 24 C 1.38308 * 120.24581 * 359.75899 * 23 22 21 25 25 C 1.38427 * 120.14057 * 359.35286 * 24 23 22 26 26 C 1.37841 * 119.69976 * 0.52556 * 25 24 23 27 27 C 1.46410 * 111.00358 * 233.49390 * 2 1 3 28 28 H 1.09005 * 109.46854 * 190.45680 * 1 2 3 29 29 H 1.08998 * 109.47540 * 310.45923 * 1 2 3 30 30 H 1.09007 * 109.46716 * 70.46290 * 1 2 3 31 31 H 1.08995 * 108.62322 * 66.72376 * 3 2 1 32 32 H 1.09000 * 108.62403 * 184.64574 * 3 2 1 33 33 H 1.09003 * 109.36092 * 56.28773 * 4 3 2 34 34 H 1.09004 * 109.35759 * 176.00818 * 4 3 2 35 35 H 1.00901 * 110.99113 * 176.04604 * 10 8 6 36 36 H 1.00896 * 110.99814 * 299.99633 * 10 8 6 37 37 H 1.09003 * 109.47357 * 305.20162 * 11 8 6 38 38 H 1.09000 * 109.47544 * 65.20504 * 11 8 6 39 39 H 1.09003 * 109.46798 * 300.00196 * 12 11 8 40 40 H 1.09000 * 109.46663 * 59.99657 * 12 11 8 41 41 H 0.96992 * 120.00043 * 179.97438 * 16 15 13 42 42 H 1.07999 * 120.16854 * 2.39289 * 22 21 5 43 43 H 1.07999 * 119.88518 * 179.73483 * 23 22 21 44 44 H 1.07997 * 119.93327 * 179.37020 * 24 23 22 45 45 H 1.07997 * 120.15008 * 180.80808 * 25 24 23 46 46 H 1.09002 * 109.51576 * 279.00743 * 27 2 1 47 47 H 1.09000 * 109.51404 * 158.83645 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9927 1.3643 0.0000 4 6 1.4594 2.2208 -1.1234 5 7 1.8904 1.6784 -2.4238 6 6 2.9646 2.1781 -3.0662 7 8 3.3594 1.6538 -4.0862 8 6 3.6754 3.3882 -2.5172 9 1 2.9596 4.0257 -1.9982 10 7 4.2889 4.1386 -3.6212 11 6 4.7629 2.9406 -1.5386 12 6 5.3971 4.1695 -0.8837 13 6 6.4678 3.7285 0.0806 14 1 6.6757 2.6770 0.2130 15 6 7.1829 4.6675 0.7933 16 7 6.9309 5.9481 0.6311 17 14 8.5107 4.1210 1.9882 18 1 9.5522 3.3573 1.2553 19 1 9.1261 5.3137 2.6238 20 1 7.9089 3.2575 3.0358 21 6 1.1459 0.6261 -2.9685 22 6 0.4041 0.8118 -4.1272 23 6 -0.3638 -0.2252 -4.6212 24 6 -0.3908 -1.4444 -3.9688 25 6 0.3627 -1.6367 -2.8236 26 6 1.1314 -0.6043 -2.3305 27 6 1.9938 -0.8131 -1.0986 28 1 -0.3633 -1.0107 0.1865 29 1 -0.3634 0.6668 0.7819 30 1 -0.3633 0.3437 -0.9686 31 1 1.7364 1.8355 0.9488 32 1 3.0786 1.3203 -0.0837 33 1 0.3703 2.2353 -1.0811 34 1 1.8387 3.2369 -1.0145 35 1 4.7168 4.9888 -3.2865 36 1 4.9569 3.5688 -4.1183 37 1 4.3214 2.3065 -0.7698 38 1 5.5277 2.3804 -2.0766 39 1 5.8387 4.8036 -1.6525 40 1 4.6323 4.7297 -0.3457 41 1 7.4337 6.6087 1.1327 42 1 0.4269 1.7621 -4.6398 43 1 -0.9456 -0.0832 -5.5200 44 1 -1.0007 -2.2483 -4.3537 45 1 0.3519 -2.5928 -2.3213 46 1 1.9741 -1.8653 -0.8146 47 1 3.0187 -0.5129 -1.3165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424151732.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:32 Heat of formation + Delta-G solvation = -15.131529 kcal Electronic energy + Delta-G solvation = -27925.811914 eV Core-core repulsion = 24300.528793 eV Total energy + Delta-G solvation = -3625.283121 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.34370 -40.17148 -38.47300 -37.16572 -36.23637 -34.86938 -32.91862 -31.76227 -31.63714 -29.55728 -28.55046 -27.93579 -26.06508 -25.82532 -23.76318 -22.99571 -22.24868 -21.41598 -20.13101 -19.04204 -18.49696 -18.13299 -17.09106 -16.84293 -16.67281 -16.51228 -16.19428 -15.97891 -15.70717 -15.51258 -15.35515 -14.99059 -14.80147 -14.55128 -14.23924 -14.04484 -13.84036 -13.55852 -13.32703 -13.01104 -13.00122 -12.84391 -12.71373 -12.57891 -12.43664 -12.36208 -12.28139 -12.19706 -11.79531 -11.58283 -11.32669 -10.87873 -10.55343 -10.48860 -9.87777 -9.75189 -9.48178 -9.26339 -8.21238 -6.31179 0.20469 0.35112 1.39753 1.41435 1.42538 1.49668 1.70939 2.40098 2.64315 3.07638 3.12625 3.39517 3.64654 3.66267 3.72375 3.85655 3.97871 4.06494 4.07235 4.13470 4.19325 4.28644 4.44529 4.49184 4.52121 4.57151 4.59595 4.68506 4.75433 4.77122 4.82933 4.94819 5.01718 5.06708 5.11796 5.31522 5.44742 5.47730 5.49266 5.55339 5.63140 5.79331 5.91827 5.99032 6.04847 6.07236 6.17455 6.21059 6.39105 6.82876 7.00526 7.37789 8.89235 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.018274 B = 0.003733 C = 0.003342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1531.826593 B = 7497.871699 C = 8376.381100 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.533 5.533 3 C 0.030 3.970 4 C 0.073 3.927 5 N -0.567 5.567 6 C 0.533 3.467 7 O -0.561 6.561 8 C 0.084 3.916 9 H 0.111 0.889 10 N -0.830 5.830 11 C -0.122 4.122 12 C 0.036 3.964 13 C -0.544 4.544 14 H 0.052 0.948 15 C 0.009 3.991 16 N -0.925 5.925 17 Si 0.955 3.045 18 H -0.273 1.273 19 H -0.282 1.282 20 H -0.267 1.267 21 C 0.123 3.877 22 C -0.129 4.129 23 C -0.112 4.112 24 C -0.115 4.115 25 C -0.099 4.099 26 C -0.126 4.126 27 C 0.100 3.900 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.028 0.972 31 H 0.108 0.892 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.356 0.644 36 H 0.344 0.656 37 H 0.067 0.933 38 H 0.039 0.961 39 H 0.002 0.998 40 H 0.006 0.994 41 H 0.264 0.736 42 H 0.109 0.891 43 H 0.147 0.853 44 H 0.157 0.843 45 H 0.153 0.847 46 H 0.103 0.897 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.777 -13.458 -3.891 23.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.254 5.254 3 C -0.099 4.099 4 C -0.050 4.050 5 N -0.296 5.296 6 C 0.323 3.677 7 O -0.438 6.438 8 C -0.030 4.030 9 H 0.129 0.871 10 N -0.362 5.362 11 C -0.161 4.161 12 C -0.002 4.002 13 C -0.582 4.582 14 H 0.070 0.930 15 C -0.189 4.189 16 N -0.564 5.564 17 Si 0.780 3.220 18 H -0.199 1.199 19 H -0.208 1.208 20 H -0.192 1.192 21 C 0.032 3.968 22 C -0.148 4.148 23 C -0.131 4.131 24 C -0.133 4.133 25 C -0.118 4.118 26 C -0.129 4.129 27 C -0.028 4.028 28 H 0.098 0.902 29 H 0.097 0.903 30 H 0.047 0.953 31 H 0.126 0.874 32 H 0.081 0.919 33 H 0.116 0.884 34 H 0.120 0.880 35 H 0.171 0.829 36 H 0.157 0.843 37 H 0.086 0.914 38 H 0.058 0.942 39 H 0.020 0.980 40 H 0.025 0.975 41 H 0.073 0.927 42 H 0.127 0.873 43 H 0.164 0.836 44 H 0.175 0.825 45 H 0.170 0.830 46 H 0.122 0.878 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -19.052 -13.669 -4.209 23.823 hybrid contribution 1.785 0.607 0.223 1.899 sum -17.267 -13.062 -3.986 22.015 Atomic orbital electron populations 1.22478 0.85913 1.03483 1.00650 1.61779 1.09470 1.11631 1.42483 1.22248 1.00209 0.88655 0.98778 1.22369 1.01869 0.99447 0.81300 1.45749 1.27768 1.34082 1.21997 1.20932 0.79148 0.84675 0.82932 1.90633 1.65557 1.61487 1.26113 1.21433 0.96910 0.92793 0.91904 0.87134 1.58802 1.41396 1.09875 1.26088 1.22209 0.96427 0.99857 0.97648 1.18915 0.94549 0.92372 0.94315 1.21527 1.19632 0.92945 1.24059 0.92966 1.25801 0.99437 0.94948 0.98754 1.70040 1.42454 1.01081 1.42864 0.85650 0.79292 0.77796 0.79237 1.19851 1.20758 1.19159 1.17680 0.95233 0.88222 0.95618 1.21311 0.97065 1.00294 0.96170 1.21340 0.98530 0.92743 1.00495 1.21589 0.99100 0.97614 0.94992 1.21240 0.95630 0.98475 0.96490 1.20902 1.00011 0.92736 0.99282 1.21332 0.95961 0.99816 0.85654 0.90203 0.90301 0.95313 0.87396 0.91894 0.88446 0.87992 0.82855 0.84321 0.91411 0.94175 0.97998 0.97548 0.92703 0.87300 0.83564 0.82525 0.82960 0.87843 0.93012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 8.28 127.69 1.06 1.43 16 2 N -0.53 -11.64 5.05 -932.27 -4.71 -16.35 16 3 C 0.03 0.72 5.41 85.80 0.46 1.18 16 4 C 0.07 1.70 5.32 85.57 0.46 2.15 16 5 N -0.57 -16.35 2.33 -633.04 -1.48 -17.83 16 6 C 0.53 18.79 6.76 87.66 0.59 19.38 16 7 O -0.56 -23.51 16.22 -3.06 -0.05 -23.56 16 8 C 0.08 2.93 2.53 44.17 0.11 3.04 16 9 H 0.11 3.52 6.10 -2.39 -0.01 3.50 16 10 N -0.83 -29.16 9.02 -171.80 -1.55 -30.71 16 11 C -0.12 -4.85 4.78 30.59 0.15 -4.70 16 12 C 0.04 1.73 4.74 29.85 0.14 1.87 16 13 C -0.54 -29.65 9.11 25.60 0.23 -29.42 16 14 H 0.05 2.80 7.74 -2.91 -0.02 2.78 16 15 C 0.01 0.52 5.46 84.66 0.46 0.98 16 16 N -0.92 -53.60 13.29 21.45 0.28 -53.32 16 17 Si 0.96 43.22 29.54 68.60 2.03 45.25 16 18 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 21 C 0.12 3.36 4.09 38.07 0.16 3.51 16 22 C -0.13 -3.32 9.67 22.39 0.22 -3.10 16 23 C -0.11 -2.15 10.03 22.27 0.22 -1.93 16 24 C -0.12 -1.81 10.05 22.33 0.22 -1.59 16 25 C -0.10 -1.74 9.69 22.22 0.22 -1.52 16 26 C -0.13 -2.91 3.29 -19.51 -0.06 -2.98 16 27 C 0.10 2.33 5.76 86.01 0.50 2.83 16 28 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 29 H 0.08 1.16 8.07 -2.39 -0.02 1.14 16 30 H 0.03 0.54 5.01 -2.38 -0.01 0.52 16 31 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.06 1.83 5.35 -2.39 -0.01 1.82 16 33 H 0.10 1.92 6.66 -2.39 -0.02 1.91 16 34 H 0.10 2.36 5.65 -2.39 -0.01 2.35 16 35 H 0.36 12.45 7.56 -89.69 -0.68 11.77 16 36 H 0.34 12.50 8.55 -89.70 -0.77 11.73 16 37 H 0.07 2.58 5.54 -2.39 -0.01 2.57 16 38 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.00 0.09 6.87 -2.39 -0.02 0.07 16 40 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.11 3.00 8.06 -2.91 -0.02 2.98 16 43 H 0.15 2.05 8.06 -2.91 -0.02 2.02 16 44 H 0.16 1.42 8.06 -2.91 -0.02 1.40 16 45 H 0.15 1.82 7.99 -2.91 -0.02 1.79 16 46 H 0.10 1.98 7.94 -2.39 -0.02 1.96 16 47 H 0.05 1.51 7.70 -2.39 -0.02 1.49 16 Total: -1.00 -67.79 363.53 -0.79 -68.57 By element: Atomic # 1 Polarization: 37.24 SS G_CDS: -0.44 Total: 36.79 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: 5.13 Total: -8.84 kcal Atomic # 7 Polarization: -110.77 SS G_CDS: -7.45 Total: -118.22 kcal Atomic # 8 Polarization: -23.51 SS G_CDS: -0.05 Total: -23.56 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Total: -67.79 -0.79 -68.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424151732.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.443 kcal (2) G-P(sol) polarization free energy of solvation -67.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds