Wall clock time and date at job start Tue Mar 31 2020 11:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46933 * 110.99846 * 2 1 4 4 C 1.52450 * 110.37383 * 326.32120 * 3 2 1 5 5 N 1.45972 * 111.69253 * 297.01827 * 4 3 2 6 6 C 1.34774 * 119.86703 * 242.89417 * 5 4 3 7 7 O 1.21283 * 119.99346 * 184.59728 * 6 5 4 8 8 C 1.50693 * 120.00350 * 4.59897 * 6 5 4 9 9 H 1.08994 * 109.47479 * 38.81879 * 8 6 5 10 10 N 1.46897 * 109.47219 * 158.81973 * 8 6 5 11 11 C 1.53004 * 109.46888 * 278.81902 * 8 6 5 12 12 C 1.53005 * 109.46904 * 176.53672 * 11 8 6 13 13 C 1.50705 * 109.46935 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99805 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00162 * 179.97438 * 13 12 11 16 16 N 1.31525 * 119.99814 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00234 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46854 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47285 * 120.00072 * 17 15 13 20 20 H 1.48508 * 109.47080 * 239.99983 * 17 15 13 21 21 C 1.46891 * 120.25598 * 63.16105 * 5 4 3 22 22 C 1.51932 * 107.96830 * 279.45385 * 21 5 4 23 23 C 1.37823 * 120.50134 * 245.00009 * 22 21 5 24 24 C 1.38427 * 119.69919 * 182.37851 * 23 22 21 25 25 C 1.38304 * 120.04671 * 359.95690 * 24 23 22 26 26 C 1.38086 * 120.30478 * 359.53800 * 25 24 23 27 27 C 1.38524 * 118.85723 * 66.41018 * 22 21 5 28 28 H 1.08998 * 109.47218 * 35.62728 * 1 2 3 29 29 H 1.08999 * 109.46660 * 155.62438 * 1 2 3 30 30 H 1.08995 * 109.47405 * 275.62270 * 1 2 3 31 31 H 1.08997 * 109.32067 * 206.04567 * 3 2 1 32 32 H 1.09000 * 109.17165 * 86.50526 * 3 2 1 33 33 H 1.09004 * 109.03750 * 176.44629 * 4 3 2 34 34 H 1.09004 * 108.97968 * 57.55114 * 4 3 2 35 35 H 1.00902 * 110.99950 * 59.99948 * 10 8 6 36 36 H 1.00903 * 111.00494 * 183.94733 * 10 8 6 37 37 H 1.08996 * 109.46965 * 56.53398 * 11 8 6 38 38 H 1.09004 * 109.47025 * 296.53191 * 11 8 6 39 39 H 1.09004 * 109.46886 * 299.99603 * 12 11 8 40 40 H 1.08996 * 109.47534 * 60.00074 * 12 11 8 41 41 H 0.96998 * 119.99723 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.70779 * 39.07640 * 21 5 4 43 43 H 1.09004 * 109.70034 * 159.69171 * 21 5 4 44 44 H 1.07997 * 120.14307 * 2.35261 * 23 22 21 45 45 H 1.08007 * 119.97249 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.84857 * 179.52436 * 25 24 23 47 47 H 1.07999 * 120.10425 * 180.08466 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3718 0.0000 4 6 1.0755 2.2934 -0.7925 5 7 1.0018 1.9042 -2.1975 6 6 1.4394 2.7492 -3.1518 7 8 1.3031 2.4643 -4.3228 8 6 2.0980 4.0480 -2.7640 9 1 2.7326 3.8876 -1.8926 10 7 2.9162 4.5352 -3.8825 11 6 1.0235 5.0844 -2.4287 12 6 1.6917 6.3757 -1.9522 13 6 0.6334 7.3964 -1.6213 14 1 -0.4113 7.1488 -1.7395 15 6 0.9986 8.6460 -1.1677 16 7 2.2708 8.9472 -1.0233 17 14 -0.3131 9.9108 -0.7568 18 1 -1.6567 9.3282 -1.0027 19 1 -0.1955 10.3000 0.6714 20 1 -0.1299 11.1101 -1.6133 21 6 0.4471 0.5976 -2.5754 22 6 1.5315 -0.4476 -2.3751 23 6 2.0483 -1.1347 -3.4522 24 6 3.0003 -2.1181 -3.2456 25 6 3.4300 -2.4075 -1.9633 26 6 2.9206 -1.7126 -0.8843 27 6 1.9698 -0.7182 -1.0892 28 1 -0.3633 0.8353 -0.5986 29 1 -0.3632 -0.9361 -0.4241 30 1 -0.3634 0.1007 1.0226 31 1 2.9876 1.3773 -0.4516 32 1 2.0653 1.7284 1.0276 33 1 1.4515 3.3144 -0.7256 34 1 0.0758 2.2540 -0.3597 35 1 2.3503 4.6918 -4.7032 36 1 3.4192 5.3713 -3.6254 37 1 0.3783 4.6968 -1.6404 38 1 0.4274 5.2904 -3.3177 39 1 2.2878 6.1697 -1.0631 40 1 2.3369 6.7634 -2.7405 41 1 2.5278 9.8265 -0.7045 42 1 -0.4103 0.3656 -1.9436 43 1 0.1394 0.6176 -3.6209 44 1 1.7117 -0.9070 -4.4528 45 1 3.4080 -2.6596 -4.0865 46 1 4.1673 -3.1807 -1.8051 47 1 3.2594 -1.9403 0.1156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424156739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:36 Heat of formation + Delta-G solvation = 30.787657 kcal Electronic energy + Delta-G solvation = -27584.336622 eV Core-core repulsion = 23961.044706 eV Total energy + Delta-G solvation = -3623.291916 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.40195 -39.32845 -37.44532 -35.65902 -34.81294 -32.93435 -32.23587 -30.65248 -29.93236 -28.87393 -27.63354 -26.34798 -25.44937 -23.81345 -22.90576 -21.71715 -20.68415 -20.36146 -18.91607 -17.78149 -17.25126 -16.39571 -16.12761 -15.90141 -15.70069 -15.52277 -14.93494 -14.54428 -14.43278 -14.26887 -14.02442 -13.77218 -13.64743 -13.25512 -13.08669 -12.86835 -12.47387 -12.23268 -12.17705 -12.04245 -11.87034 -11.63347 -11.44939 -11.18283 -11.08440 -11.08221 -10.96262 -10.69392 -10.04292 -9.96271 -9.39909 -9.26575 -9.11663 -8.92639 -8.79390 -8.48229 -8.31960 -8.21169 -6.12300 -4.15641 1.09053 1.25353 2.82213 2.95789 3.23497 3.31832 3.35349 3.61584 3.66611 4.35879 4.48013 4.60692 4.75336 4.81245 4.83997 4.90808 4.93021 5.10500 5.14159 5.17091 5.24032 5.26493 5.28699 5.45897 5.49590 5.52168 5.58655 5.62255 5.68104 5.78899 5.81515 5.89979 6.20462 6.20943 6.35031 6.39043 6.43459 6.49502 6.61124 6.66260 6.80734 7.21945 7.29063 7.46363 7.53234 7.58345 7.84438 7.87096 8.26449 8.34498 8.90381 9.49667 10.98544 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.003210 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.326933 B = 8720.021131 C = 9256.528118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.006 4.006 2 N -0.496 5.496 3 C 0.039 3.961 4 C 0.060 3.940 5 N -0.611 5.611 6 C 0.530 3.470 7 O -0.533 6.533 8 C 0.075 3.925 9 H 0.096 0.904 10 N -0.830 5.830 11 C -0.140 4.140 12 C 0.025 3.975 13 C -0.524 4.524 14 H 0.055 0.945 15 C 0.059 3.941 16 N -0.892 5.892 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.283 1.283 20 H -0.283 1.283 21 C 0.128 3.872 22 C -0.128 4.128 23 C -0.092 4.092 24 C -0.125 4.125 25 C -0.115 4.115 26 C -0.101 4.101 27 C 0.095 3.905 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.108 0.892 34 H 0.083 0.917 35 H 0.345 0.655 36 H 0.355 0.645 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.261 0.739 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.123 0.877 47 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.750 -21.533 1.492 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 N -0.216 5.216 3 C -0.088 4.088 4 C -0.064 4.064 5 N -0.345 5.345 6 C 0.319 3.681 7 O -0.409 6.409 8 C -0.040 4.040 9 H 0.114 0.886 10 N -0.362 5.362 11 C -0.180 4.180 12 C -0.012 4.012 13 C -0.562 4.562 14 H 0.073 0.927 15 C -0.143 4.143 16 N -0.531 5.531 17 Si 0.720 3.280 18 H -0.198 1.198 19 H -0.209 1.209 20 H -0.209 1.209 21 C 0.006 3.994 22 C -0.131 4.131 23 C -0.112 4.112 24 C -0.143 4.143 25 C -0.134 4.134 26 C -0.120 4.120 27 C 0.001 3.999 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.093 0.907 31 H 0.097 0.903 32 H 0.116 0.884 33 H 0.126 0.874 34 H 0.101 0.899 35 H 0.159 0.841 36 H 0.170 0.830 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.071 0.929 42 H 0.118 0.882 43 H 0.115 0.885 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.141 0.859 47 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.170 -22.428 1.428 22.474 hybrid contribution -1.459 1.982 -0.276 2.476 sum -1.629 -20.446 1.152 20.543 Atomic orbital electron populations 1.23142 0.86858 1.02339 1.02944 1.60124 1.08471 1.13556 1.39424 1.22611 0.98816 0.86035 1.01310 1.22226 1.01795 1.01300 0.81100 1.47826 1.63582 1.16558 1.06552 1.20963 0.76851 0.85134 0.85125 1.90613 1.55732 1.76235 1.18272 1.21501 0.95585 0.91501 0.95431 0.88644 1.58752 1.31597 1.39782 1.06119 1.22449 0.97252 0.97172 1.01082 1.19105 0.95976 0.89840 0.96323 1.21197 0.92999 0.97654 1.44340 0.92679 1.25011 0.95350 0.98431 0.95494 1.69960 1.15200 1.21532 1.46399 0.86534 0.81945 0.81457 0.78069 1.19763 1.20907 1.20943 1.21228 0.94088 0.80519 1.03564 1.21005 1.00026 0.98330 0.93726 1.20961 0.96517 0.95294 0.98396 1.21200 0.97741 0.98247 0.97142 1.21088 0.99945 0.99845 0.92543 1.21043 0.96577 0.95130 0.99243 1.18764 0.97015 0.95850 0.88309 0.91581 0.91537 0.90663 0.90314 0.88405 0.87357 0.89859 0.84128 0.82968 0.92434 0.92596 0.96329 0.96363 0.92901 0.88152 0.88450 0.85794 0.86013 0.85926 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.06 7.72 60.07 0.46 0.41 16 2 N -0.50 -5.27 5.00 -179.30 -0.90 -6.17 16 3 C 0.04 0.42 6.11 -4.09 -0.02 0.40 16 4 C 0.06 0.70 4.86 -4.61 -0.02 0.68 16 5 N -0.61 -8.35 2.67 -174.77 -0.47 -8.82 16 6 C 0.53 8.97 6.91 -10.99 -0.08 8.90 16 7 O -0.53 -10.46 15.69 5.56 0.09 -10.38 16 8 C 0.07 1.28 2.36 -68.87 -0.16 1.12 16 9 H 0.10 1.56 6.85 -51.93 -0.36 1.21 16 10 N -0.83 -14.51 8.93 -5.66 -0.05 -14.56 16 11 C -0.14 -2.69 4.44 -26.73 -0.12 -2.81 16 12 C 0.02 0.58 4.71 -27.88 -0.13 0.45 16 13 C -0.52 -14.08 9.11 -34.44 -0.31 -14.40 16 14 H 0.05 1.46 7.74 -52.48 -0.41 1.06 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.89 -25.62 13.29 55.43 0.74 -24.88 16 17 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 18 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 19 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 20 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 21 C 0.13 1.57 5.44 -4.37 -0.02 1.55 16 22 C -0.13 -1.56 5.31 -104.06 -0.55 -2.11 16 23 C -0.09 -1.09 9.71 -39.66 -0.39 -1.48 16 24 C -0.13 -1.28 10.05 -39.49 -0.40 -1.68 16 25 C -0.12 -1.12 10.03 -39.61 -0.40 -1.51 16 26 C -0.10 -1.07 9.98 -39.32 -0.39 -1.46 16 27 C 0.09 1.10 4.28 -83.83 -0.36 0.74 16 28 H 0.07 0.61 2.67 -51.93 -0.14 0.47 16 29 H 0.07 0.58 7.54 -51.93 -0.39 0.19 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.95 7.74 -51.93 -0.40 0.55 16 32 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.11 1.38 4.52 -51.93 -0.23 1.14 16 34 H 0.08 0.86 5.94 -51.93 -0.31 0.55 16 35 H 0.35 6.12 8.57 -39.29 -0.34 5.78 16 36 H 0.35 6.18 7.50 -39.29 -0.29 5.89 16 37 H 0.06 1.05 6.75 -51.93 -0.35 0.70 16 38 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 39 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.02 0.45 6.83 -51.93 -0.35 0.10 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.10 1.03 4.47 -51.93 -0.23 0.80 16 43 H 0.10 1.31 6.95 -51.93 -0.36 0.95 16 44 H 0.12 1.43 8.01 -52.49 -0.42 1.01 16 45 H 0.12 0.99 8.06 -52.48 -0.42 0.56 16 46 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 47 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 LS Contribution 360.06 15.07 5.43 5.43 Total: -1.00 -31.22 360.06 -9.86 -41.08 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -6.68 Total: 12.03 kcal Atomic # 6 Polarization: -6.70 SS G_CDS: -2.99 Total: -9.69 kcal Atomic # 7 Polarization: -53.74 SS G_CDS: -0.68 Total: -54.42 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.22 -9.86 -41.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424156739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.864 kcal (2) G-P(sol) polarization free energy of solvation -31.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds