Wall clock time and date at job start Tue Mar 31 2020 11:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46933 * 110.99846 * 2 1 4 4 C 1.52450 * 110.37383 * 326.32120 * 3 2 1 5 5 N 1.45972 * 111.69253 * 297.01827 * 4 3 2 6 6 C 1.34774 * 119.86703 * 242.89417 * 5 4 3 7 7 O 1.21283 * 119.99346 * 184.59728 * 6 5 4 8 8 C 1.50693 * 120.00350 * 4.59897 * 6 5 4 9 9 H 1.08994 * 109.47479 * 38.81879 * 8 6 5 10 10 N 1.46897 * 109.47219 * 158.81973 * 8 6 5 11 11 C 1.53004 * 109.46888 * 278.81902 * 8 6 5 12 12 C 1.53005 * 109.46904 * 176.53672 * 11 8 6 13 13 C 1.50705 * 109.46935 * 180.02562 * 12 11 8 14 14 H 1.08005 * 119.99805 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00162 * 179.97438 * 13 12 11 16 16 N 1.31525 * 119.99814 * 359.97438 * 15 13 12 17 17 Si 1.86796 * 120.00234 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.46854 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47285 * 120.00072 * 17 15 13 20 20 H 1.48508 * 109.47080 * 239.99983 * 17 15 13 21 21 C 1.46891 * 120.25598 * 63.16105 * 5 4 3 22 22 C 1.51932 * 107.96830 * 279.45385 * 21 5 4 23 23 C 1.37823 * 120.50134 * 245.00009 * 22 21 5 24 24 C 1.38427 * 119.69919 * 182.37851 * 23 22 21 25 25 C 1.38304 * 120.04671 * 359.95690 * 24 23 22 26 26 C 1.38086 * 120.30478 * 359.53800 * 25 24 23 27 27 C 1.38524 * 118.85723 * 66.41018 * 22 21 5 28 28 H 1.08998 * 109.47218 * 35.62728 * 1 2 3 29 29 H 1.08999 * 109.46660 * 155.62438 * 1 2 3 30 30 H 1.08995 * 109.47405 * 275.62270 * 1 2 3 31 31 H 1.08997 * 109.32067 * 206.04567 * 3 2 1 32 32 H 1.09000 * 109.17165 * 86.50526 * 3 2 1 33 33 H 1.09004 * 109.03750 * 176.44629 * 4 3 2 34 34 H 1.09004 * 108.97968 * 57.55114 * 4 3 2 35 35 H 1.00902 * 110.99950 * 59.99948 * 10 8 6 36 36 H 1.00903 * 111.00494 * 183.94733 * 10 8 6 37 37 H 1.08996 * 109.46965 * 56.53398 * 11 8 6 38 38 H 1.09004 * 109.47025 * 296.53191 * 11 8 6 39 39 H 1.09004 * 109.46886 * 299.99603 * 12 11 8 40 40 H 1.08996 * 109.47534 * 60.00074 * 12 11 8 41 41 H 0.96998 * 119.99723 * 179.97438 * 16 15 13 42 42 H 1.09000 * 109.70779 * 39.07640 * 21 5 4 43 43 H 1.09004 * 109.70034 * 159.69171 * 21 5 4 44 44 H 1.07997 * 120.14307 * 2.35261 * 23 22 21 45 45 H 1.08007 * 119.97249 * 179.97438 * 24 23 22 46 46 H 1.08001 * 119.84857 * 179.52436 * 25 24 23 47 47 H 1.07999 * 120.10425 * 180.08466 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9956 1.3718 0.0000 4 6 1.0755 2.2934 -0.7925 5 7 1.0018 1.9042 -2.1975 6 6 1.4394 2.7492 -3.1518 7 8 1.3031 2.4643 -4.3228 8 6 2.0980 4.0480 -2.7640 9 1 2.7326 3.8876 -1.8926 10 7 2.9162 4.5352 -3.8825 11 6 1.0235 5.0844 -2.4287 12 6 1.6917 6.3757 -1.9522 13 6 0.6334 7.3964 -1.6213 14 1 -0.4113 7.1488 -1.7395 15 6 0.9986 8.6460 -1.1677 16 7 2.2708 8.9472 -1.0233 17 14 -0.3131 9.9108 -0.7568 18 1 -1.6567 9.3282 -1.0027 19 1 -0.1955 10.3000 0.6714 20 1 -0.1299 11.1101 -1.6133 21 6 0.4471 0.5976 -2.5754 22 6 1.5315 -0.4476 -2.3751 23 6 2.0483 -1.1347 -3.4522 24 6 3.0003 -2.1181 -3.2456 25 6 3.4300 -2.4075 -1.9633 26 6 2.9206 -1.7126 -0.8843 27 6 1.9698 -0.7182 -1.0892 28 1 -0.3633 0.8353 -0.5986 29 1 -0.3632 -0.9361 -0.4241 30 1 -0.3634 0.1007 1.0226 31 1 2.9876 1.3773 -0.4516 32 1 2.0653 1.7284 1.0276 33 1 1.4515 3.3144 -0.7256 34 1 0.0758 2.2540 -0.3597 35 1 2.3503 4.6918 -4.7032 36 1 3.4192 5.3713 -3.6254 37 1 0.3783 4.6968 -1.6404 38 1 0.4274 5.2904 -3.3177 39 1 2.2878 6.1697 -1.0631 40 1 2.3369 6.7634 -2.7405 41 1 2.5278 9.8265 -0.7045 42 1 -0.4103 0.3656 -1.9436 43 1 0.1394 0.6176 -3.6209 44 1 1.7117 -0.9070 -4.4528 45 1 3.4080 -2.6596 -4.0865 46 1 4.1673 -3.1807 -1.8051 47 1 3.2594 -1.9403 0.1156 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424156739.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:35 Heat of formation + Delta-G solvation = 10.057969 kcal Electronic energy + Delta-G solvation = -27585.235528 eV Core-core repulsion = 23961.044706 eV Total energy + Delta-G solvation = -3624.190823 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.37859 -40.51014 -38.34301 -37.22125 -35.88726 -34.87885 -33.16767 -31.71410 -31.51171 -29.68205 -28.90675 -27.59470 -26.60002 -25.34285 -23.87501 -22.85127 -21.92783 -21.49350 -20.13517 -19.06097 -18.42486 -18.06748 -17.26823 -16.86459 -16.67355 -16.49640 -16.34187 -16.00817 -15.68171 -15.65282 -15.09374 -14.89503 -14.65657 -14.58533 -14.41737 -13.97968 -13.93269 -13.51771 -13.29024 -13.04187 -12.97783 -12.85357 -12.81299 -12.57169 -12.50571 -12.25799 -12.01392 -11.97909 -11.82283 -11.71150 -11.28922 -10.82130 -10.56845 -10.15650 -9.80142 -9.72918 -9.61401 -9.22009 -8.21681 -6.31908 0.25570 0.41246 1.38658 1.40636 1.48753 1.52383 1.85007 2.39724 2.76968 2.86871 3.12272 3.36421 3.65106 3.69348 3.87505 3.89183 3.94963 3.97955 4.06199 4.16518 4.18246 4.25595 4.37716 4.45576 4.47809 4.59759 4.60571 4.69511 4.76292 4.78166 4.80232 4.94885 5.03722 5.05415 5.07844 5.33472 5.43188 5.45933 5.55428 5.58067 5.63025 5.79067 5.80937 5.87571 5.99030 6.19683 6.24019 6.38996 6.42222 6.83304 7.04611 7.37417 8.89202 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021218 B = 0.003210 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1319.326933 B = 8720.021131 C = 9256.528118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.007 4.007 2 N -0.495 5.495 3 C 0.046 3.954 4 C 0.056 3.944 5 N -0.602 5.602 6 C 0.528 3.472 7 O -0.566 6.566 8 C 0.083 3.917 9 H 0.105 0.895 10 N -0.831 5.831 11 C -0.121 4.121 12 C 0.032 3.968 13 C -0.542 4.542 14 H 0.055 0.945 15 C 0.006 3.994 16 N -0.926 5.926 17 Si 0.958 3.042 18 H -0.265 1.265 19 H -0.276 1.276 20 H -0.282 1.282 21 C 0.128 3.872 22 C -0.143 4.143 23 C -0.111 4.111 24 C -0.129 4.129 25 C -0.112 4.112 26 C -0.108 4.108 27 C 0.084 3.916 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.062 0.938 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.104 0.896 35 H 0.344 0.656 36 H 0.353 0.647 37 H 0.070 0.930 38 H 0.043 0.957 39 H 0.004 0.996 40 H 0.001 0.999 41 H 0.264 0.736 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.117 0.883 45 H 0.142 0.858 46 H 0.151 0.849 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.404 -22.731 2.860 22.954 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 N -0.215 5.215 3 C -0.082 4.082 4 C -0.067 4.067 5 N -0.334 5.334 6 C 0.317 3.683 7 O -0.445 6.445 8 C -0.032 4.032 9 H 0.122 0.878 10 N -0.363 5.363 11 C -0.161 4.161 12 C -0.005 4.005 13 C -0.580 4.580 14 H 0.073 0.927 15 C -0.192 4.192 16 N -0.566 5.566 17 Si 0.783 3.217 18 H -0.190 1.190 19 H -0.202 1.202 20 H -0.208 1.208 21 C 0.007 3.993 22 C -0.146 4.146 23 C -0.130 4.130 24 C -0.147 4.147 25 C -0.130 4.130 26 C -0.127 4.127 27 C -0.010 4.010 28 H 0.081 0.919 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.081 0.919 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.157 0.843 36 H 0.169 0.831 37 H 0.088 0.912 38 H 0.062 0.938 39 H 0.023 0.977 40 H 0.019 0.981 41 H 0.073 0.927 42 H 0.141 0.859 43 H 0.099 0.901 44 H 0.135 0.865 45 H 0.160 0.840 46 H 0.168 0.832 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.837 -23.655 2.826 23.838 hybrid contribution -1.221 2.278 -0.685 2.674 sum -2.058 -21.377 2.141 21.582 Atomic orbital electron populations 1.23172 0.85870 1.02319 1.03886 1.60223 1.09355 1.13074 1.38855 1.22573 0.97613 0.86090 1.01892 1.22401 1.03297 1.00998 0.80010 1.47838 1.62170 1.16524 1.06914 1.20838 0.76946 0.85394 0.85158 1.90598 1.57251 1.76996 1.19611 1.21405 0.94966 0.91274 0.95574 0.87759 1.58762 1.31615 1.39649 1.06226 1.22181 0.97432 0.95808 1.00654 1.18953 0.95151 0.91301 0.95123 1.21613 0.93659 0.98646 1.44112 0.92688 1.25842 0.97391 1.00542 0.95436 1.70069 1.17035 1.22161 1.47300 0.85504 0.79494 0.78735 0.77952 1.18961 1.20201 1.20763 1.21354 0.95049 0.79817 1.03105 1.21017 1.00533 0.98754 0.94342 1.21096 0.97481 0.96302 0.98166 1.21478 0.97104 0.97752 0.98323 1.21428 0.99812 0.99891 0.91917 1.21304 0.96236 0.94903 1.00229 1.18938 0.97456 0.96392 0.88229 0.91916 0.91249 0.89105 0.91907 0.86500 0.88426 0.87807 0.84327 0.83130 0.91185 0.93827 0.97742 0.98084 0.92746 0.85902 0.90101 0.86459 0.84023 0.83177 0.84172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.01 -0.10 7.72 127.69 0.99 0.88 16 2 N -0.50 -9.52 5.00 -721.19 -3.61 -13.12 16 3 C 0.05 0.90 6.11 86.11 0.53 1.43 16 4 C 0.06 1.23 4.86 86.30 0.42 1.65 16 5 N -0.60 -16.10 2.67 -825.24 -2.21 -18.31 16 6 C 0.53 17.91 6.91 87.66 0.61 18.52 16 7 O -0.57 -22.62 15.69 -3.04 -0.05 -22.67 16 8 C 0.08 2.84 2.36 44.17 0.10 2.95 16 9 H 0.10 3.40 6.85 -2.39 -0.02 3.38 16 10 N -0.83 -29.56 8.93 -171.82 -1.53 -31.10 16 11 C -0.12 -4.66 4.44 30.60 0.14 -4.52 16 12 C 0.03 1.53 4.71 29.85 0.14 1.67 16 13 C -0.54 -29.20 9.11 25.60 0.23 -28.97 16 14 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 15 C 0.01 0.35 5.46 84.65 0.46 0.82 16 16 N -0.93 -53.52 13.29 21.45 0.28 -53.24 16 17 Si 0.96 42.75 29.54 68.60 2.03 44.78 16 18 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 19 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 20 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 21 C 0.13 3.09 5.44 85.95 0.47 3.55 16 22 C -0.14 -3.41 5.31 -19.50 -0.10 -3.51 16 23 C -0.11 -2.60 9.71 22.22 0.22 -2.38 16 24 C -0.13 -2.45 10.05 22.33 0.22 -2.22 16 25 C -0.11 -1.91 10.03 22.25 0.22 -1.69 16 26 C -0.11 -2.07 9.98 22.44 0.22 -1.85 16 27 C 0.08 1.83 4.28 38.15 0.16 1.99 16 28 H 0.06 1.01 2.67 -2.39 -0.01 1.01 16 29 H 0.07 1.06 7.54 -2.39 -0.02 1.04 16 30 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.46 7.74 -2.39 -0.02 1.44 16 32 H 0.12 1.88 8.14 -2.39 -0.02 1.86 16 33 H 0.10 2.38 4.52 -2.39 -0.01 2.37 16 34 H 0.10 1.89 5.94 -2.38 -0.01 1.88 16 35 H 0.34 12.47 8.57 -89.69 -0.77 11.70 16 36 H 0.35 12.64 7.50 -89.69 -0.67 11.96 16 37 H 0.07 2.50 6.75 -2.39 -0.02 2.48 16 38 H 0.04 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.00 0.21 8.14 -2.38 -0.02 0.19 16 40 H 0.00 0.04 6.83 -2.39 -0.02 0.03 16 41 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 42 H 0.12 2.36 4.47 -2.39 -0.01 2.35 16 43 H 0.08 2.22 6.95 -2.38 -0.02 2.21 16 44 H 0.12 2.79 8.01 -2.91 -0.02 2.77 16 45 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 46 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 47 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -66.54 360.06 -0.48 -67.03 By element: Atomic # 1 Polarization: 38.73 SS G_CDS: -0.43 Total: 38.30 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.03 Total: -11.68 kcal Atomic # 7 Polarization: -108.70 SS G_CDS: -7.06 Total: -115.76 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -66.54 -0.48 -67.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424156739.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.086 kcal (2) G-P(sol) polarization free energy of solvation -66.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.542 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds