Wall clock time and date at job start Tue Mar 31 2020 11:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99847 * 2 1 4 4 C 1.50699 * 109.47183 * 82.41890 * 3 2 1 5 5 C 1.38129 * 120.03659 * 260.63504 * 4 3 2 6 6 C 1.38261 * 120.07730 * 180.02562 * 5 4 3 7 7 C 1.38312 * 120.14756 * 359.70461 * 6 5 4 8 8 C 1.38081 * 120.07074 * 0.55258 * 7 6 5 9 9 C 1.38885 * 120.04291 * 80.65759 * 4 3 2 10 10 N 1.39678 * 120.06993 * 359.95468 * 9 4 3 11 11 C 1.48538 * 110.99738 * 122.98572 * 10 9 4 12 12 C 1.54937 * 103.22613 * 159.71846 * 11 10 9 13 13 C 1.54602 * 102.92403 * 322.58700 * 12 11 10 14 14 C 1.47898 * 111.00002 * 240.38030 * 10 9 4 15 15 C 1.34774 * 120.00076 * 179.97438 * 2 1 3 16 16 O 1.21590 * 119.99827 * 175.78374 * 15 2 1 17 17 N 1.34769 * 120.00033 * 355.78006 * 15 2 1 18 18 C 1.46508 * 120.00130 * 179.97438 * 17 15 2 19 19 C 1.50703 * 109.47258 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99610 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00170 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99836 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00225 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46935 * 59.99662 * 23 21 19 25 25 H 1.48500 * 109.47298 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47367 * 299.99928 * 23 21 19 27 27 H 1.08998 * 109.46965 * 90.00305 * 1 2 3 28 28 H 1.08996 * 109.46699 * 210.00050 * 1 2 3 29 29 H 1.09000 * 109.47050 * 329.99766 * 1 2 3 30 30 H 1.08999 * 109.47092 * 322.41859 * 3 2 1 31 31 H 1.09002 * 109.46889 * 202.41627 * 3 2 1 32 32 H 1.08002 * 119.96179 * 0.02729 * 5 4 3 33 33 H 1.07996 * 119.92553 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.96396 * 180.29706 * 7 6 5 35 35 H 1.08007 * 120.03097 * 179.74716 * 8 7 6 36 36 H 1.08991 * 110.66695 * 278.15849 * 11 10 9 37 37 H 1.09002 * 110.66218 * 41.28853 * 11 10 9 38 38 H 1.09003 * 110.72697 * 204.22743 * 12 11 10 39 39 H 1.09000 * 110.72366 * 80.94400 * 12 11 10 40 40 H 1.08995 * 110.30897 * 263.04021 * 13 12 11 41 41 H 1.08993 * 110.30627 * 140.86895 * 13 12 11 42 42 H 1.09003 * 109.91897 * 333.51219 * 14 10 9 43 43 H 1.09006 * 109.91685 * 94.80709 * 14 10 9 44 44 H 0.97005 * 120.00389 * 0.02562 * 17 15 2 45 45 H 1.08995 * 109.47060 * 300.00399 * 18 17 15 46 46 H 1.09001 * 109.46672 * 60.00291 * 18 17 15 47 47 H 0.97001 * 120.00129 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2864 1.7976 1.4084 5 6 1.4134 2.7795 1.8346 6 6 1.4945 3.2656 3.1264 7 6 2.4454 2.7665 3.9980 8 6 3.3246 1.7887 3.5768 9 6 3.2463 1.2985 2.2792 10 7 4.1304 0.3052 1.8516 11 6 5.5407 0.7419 2.0145 12 6 6.3276 -0.5928 2.0123 13 6 5.3902 -1.5481 2.7862 14 6 3.9898 -0.9179 2.6711 15 6 2.1389 -1.1672 0.0005 16 8 3.3523 -1.1686 -0.0769 17 7 1.4678 -2.3327 0.0869 18 6 2.2003 -3.6015 0.0869 19 6 1.2243 -4.7450 0.1915 20 1 0.1645 -4.5465 0.2523 21 6 1.6845 -6.0445 0.2106 22 7 2.9752 -6.2862 0.1370 23 14 0.4748 -7.4619 0.3409 24 1 -0.4547 -7.4274 -0.8168 25 1 1.2173 -8.7480 0.3408 26 1 -0.2999 -7.3372 1.6016 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6739 1.9906 -0.6268 31 1 3.2019 1.1084 -0.3919 32 1 0.6666 3.1680 1.1580 33 1 0.8110 4.0337 3.4569 34 1 2.5029 3.1450 5.0079 35 1 4.0695 1.4023 4.2567 36 1 5.8476 1.3708 1.1790 37 1 5.6743 1.2656 2.9611 38 1 7.2789 -0.4807 2.5325 39 1 6.4833 -0.9470 0.9933 40 1 5.6925 -1.6100 3.8316 41 1 5.3983 -2.5379 2.3299 42 1 3.6160 -0.6601 3.6621 43 1 3.3079 -1.6150 2.1839 44 1 0.4997 -2.3316 0.1484 45 1 2.7687 -3.6929 -0.8386 46 1 2.8828 -3.6270 0.9365 47 1 3.2990 -7.2005 0.1508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426445043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:20 Heat of formation + Delta-G solvation = 23.808983 kcal Electronic energy + Delta-G solvation = -28077.039806 eV Core-core repulsion = 24453.445272 eV Total energy + Delta-G solvation = -3623.594534 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.35026 -38.88854 -37.59612 -35.04210 -33.95125 -32.52254 -32.19892 -31.29004 -28.52953 -28.52743 -27.21106 -26.81260 -24.91205 -23.08618 -22.39930 -21.19329 -20.61933 -20.22573 -19.02771 -17.72258 -17.05823 -16.06785 -15.79164 -15.73312 -15.57223 -14.85702 -14.82003 -14.55444 -14.15189 -13.67480 -13.38723 -13.24287 -12.93286 -12.88815 -12.72696 -12.51209 -12.20302 -11.97722 -11.86789 -11.72875 -11.59610 -11.50672 -11.24132 -10.95943 -10.94168 -10.87181 -10.83497 -10.79743 -10.21514 -10.18208 -9.29916 -9.08585 -8.76070 -8.62752 -8.47975 -8.11762 -7.99572 -7.53759 -6.09697 -4.15136 1.33681 1.35887 3.28664 3.33183 3.34237 3.43346 3.89210 4.18065 4.24922 4.37260 4.85233 4.90621 4.97050 5.01110 5.03517 5.14736 5.26225 5.27120 5.31012 5.40716 5.47408 5.49204 5.59424 5.72399 5.76394 5.82079 5.90346 5.96081 5.99071 6.06754 6.13724 6.23265 6.35626 6.42038 6.48159 6.51157 6.61256 6.72019 6.92063 7.02885 7.18386 7.31906 7.63733 7.68406 7.72960 7.73127 8.01781 8.13784 8.86101 9.11938 9.46723 9.71804 11.00336 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.004232 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.148739 B = 6614.558532 C = 7593.518794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.636 5.636 3 C 0.184 3.816 4 C -0.082 4.082 5 C -0.107 4.107 6 C -0.132 4.132 7 C -0.113 4.113 8 C -0.157 4.157 9 C 0.109 3.891 10 N -0.450 5.450 11 C 0.042 3.958 12 C -0.116 4.116 13 C -0.126 4.126 14 C 0.053 3.947 15 C 0.689 3.311 16 O -0.557 6.557 17 N -0.739 5.739 18 C 0.273 3.727 19 C -0.540 4.540 20 H 0.059 0.941 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.900 3.100 24 H -0.276 1.276 25 H -0.286 1.286 26 H -0.276 1.276 27 H 0.048 0.952 28 H 0.064 0.936 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.105 0.895 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.063 0.937 39 H 0.080 0.920 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.030 0.970 43 H 0.092 0.908 44 H 0.382 0.618 45 H 0.021 0.979 46 H 0.021 0.979 47 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.115 18.701 5.518 19.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.376 5.376 3 C 0.060 3.940 4 C -0.085 4.085 5 C -0.126 4.126 6 C -0.150 4.150 7 C -0.132 4.132 8 C -0.177 4.177 9 C 0.013 3.987 10 N -0.171 5.171 11 C -0.085 4.085 12 C -0.154 4.154 13 C -0.164 4.164 14 C -0.072 4.072 15 C 0.390 3.610 16 O -0.432 6.432 17 N -0.393 5.393 18 C 0.152 3.848 19 C -0.578 4.578 20 H 0.077 0.923 21 C -0.139 4.139 22 N -0.523 5.523 23 Si 0.728 3.272 24 H -0.202 1.202 25 H -0.211 1.211 26 H -0.202 1.202 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.123 0.877 32 H 0.139 0.861 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.134 0.866 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.082 0.918 39 H 0.098 0.902 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.049 0.951 43 H 0.111 0.889 44 H 0.215 0.785 45 H 0.039 0.961 46 H 0.039 0.961 47 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.146 18.334 4.873 18.971 hybrid contribution -1.154 -0.635 1.206 1.786 sum -1.300 17.699 6.079 18.759 Atomic orbital electron populations 1.21567 0.81288 1.02217 1.00854 1.47006 1.05218 1.04939 1.80396 1.19904 0.99366 0.83774 0.90957 1.20350 0.94684 0.95904 0.97538 1.21005 0.98492 0.97039 0.96064 1.21058 0.99167 1.00696 0.94060 1.20963 0.95782 0.97158 0.99301 1.21710 1.00391 0.98820 0.96749 1.19079 0.94640 0.93710 0.91236 1.62534 1.01734 1.01725 1.51110 1.23277 0.88205 0.97356 0.99620 1.22398 0.96950 0.94356 1.01687 1.22317 0.94276 1.00518 0.99264 1.22889 0.98459 0.91846 0.94041 1.16077 0.85814 0.80201 0.78861 1.90934 1.10821 1.85459 1.56009 1.45879 1.09710 1.05896 1.77849 1.18839 0.91734 0.77077 0.97168 1.21216 0.93201 0.90961 1.52434 0.92298 1.24904 0.95286 0.98757 0.94917 1.69966 1.12573 1.20687 1.49094 0.86537 0.80858 0.81213 0.78638 1.20151 1.21141 1.20197 0.93383 0.91712 0.92009 0.91624 0.87727 0.86079 0.86395 0.86597 0.86571 0.90442 0.94392 0.91840 0.90156 0.92507 0.90241 0.95132 0.88943 0.78487 0.96106 0.96088 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.07 10.31 59.85 0.62 1.69 16 2 N -0.64 -10.24 2.86 -188.74 -0.54 -10.78 16 3 C 0.18 2.63 5.34 -5.19 -0.03 2.61 16 4 C -0.08 -1.13 5.45 -104.42 -0.57 -1.70 16 5 C -0.11 -1.21 9.66 -39.61 -0.38 -1.59 16 6 C -0.13 -1.40 10.04 -39.55 -0.40 -1.79 16 7 C -0.11 -1.28 10.04 -39.61 -0.40 -1.68 16 8 C -0.16 -2.06 7.90 -39.38 -0.31 -2.37 16 9 C 0.11 1.62 4.82 -83.79 -0.40 1.21 16 10 N -0.45 -7.36 2.28 -167.16 -0.38 -7.74 16 11 C 0.04 0.59 6.41 -1.89 -0.01 0.58 16 12 C -0.12 -1.67 7.06 -24.87 -0.18 -1.84 16 13 C -0.13 -2.01 6.93 -25.37 -0.18 -2.19 16 14 C 0.05 0.94 5.77 -2.75 -0.02 0.92 16 15 C 0.69 14.15 6.93 -86.93 -0.60 13.55 16 16 O -0.56 -12.90 12.17 5.29 0.06 -12.83 16 17 N -0.74 -16.06 5.43 -66.41 -0.36 -16.42 16 18 C 0.27 7.25 5.43 -5.19 -0.03 7.22 16 19 C -0.54 -14.74 9.28 -34.44 -0.32 -15.06 16 20 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 21 C 0.06 1.80 5.46 -17.82 -0.10 1.70 16 22 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 23 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 27 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.84 6.20 -51.93 -0.32 0.52 16 29 H 0.06 0.64 8.07 -51.93 -0.42 0.23 16 30 H 0.07 0.75 7.99 -51.93 -0.42 0.34 16 31 H 0.10 1.75 6.80 -51.93 -0.35 1.40 16 32 H 0.12 1.08 8.04 -52.49 -0.42 0.66 16 33 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 34 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 35 H 0.12 1.46 7.05 -52.48 -0.37 1.09 16 36 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.04 0.49 6.62 -51.93 -0.34 0.14 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.03 0.51 6.72 -51.93 -0.35 0.16 16 43 H 0.09 1.99 6.13 -51.93 -0.32 1.67 16 44 H 0.38 7.45 5.98 -40.82 -0.24 7.20 16 45 H 0.02 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 370.49 15.07 5.58 5.58 Total: -1.00 -31.32 370.49 -10.54 -41.86 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -7.32 Total: 8.37 kcal Atomic # 6 Polarization: 4.56 SS G_CDS: -3.30 Total: 1.26 kcal Atomic # 7 Polarization: -59.68 SS G_CDS: -0.55 Total: -60.23 kcal Atomic # 8 Polarization: -12.90 SS G_CDS: 0.06 Total: -12.83 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.32 -10.54 -41.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426445043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.664 kcal (2) G-P(sol) polarization free energy of solvation -31.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds