Wall clock time and date at job start Tue Mar 31 2020 11:34:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46506 * 119.99847 * 2 1 4 4 C 1.50699 * 109.47183 * 82.41890 * 3 2 1 5 5 C 1.38129 * 120.03659 * 260.63504 * 4 3 2 6 6 C 1.38261 * 120.07730 * 180.02562 * 5 4 3 7 7 C 1.38312 * 120.14756 * 359.70461 * 6 5 4 8 8 C 1.38081 * 120.07074 * 0.55258 * 7 6 5 9 9 C 1.38885 * 120.04291 * 80.65759 * 4 3 2 10 10 N 1.39678 * 120.06993 * 359.95468 * 9 4 3 11 11 C 1.48538 * 110.99738 * 122.98572 * 10 9 4 12 12 C 1.54937 * 103.22613 * 159.71846 * 11 10 9 13 13 C 1.54602 * 102.92403 * 322.58700 * 12 11 10 14 14 C 1.47898 * 111.00002 * 240.38030 * 10 9 4 15 15 C 1.34774 * 120.00076 * 179.97438 * 2 1 3 16 16 O 1.21590 * 119.99827 * 175.78374 * 15 2 1 17 17 N 1.34769 * 120.00033 * 355.78006 * 15 2 1 18 18 C 1.46508 * 120.00130 * 179.97438 * 17 15 2 19 19 C 1.50703 * 109.47258 * 180.02562 * 18 17 15 20 20 H 1.08000 * 119.99610 * 359.97438 * 19 18 17 21 21 C 1.37871 * 120.00170 * 180.02562 * 19 18 17 22 22 N 1.31516 * 119.99836 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00225 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.46935 * 59.99662 * 23 21 19 25 25 H 1.48500 * 109.47298 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47367 * 299.99928 * 23 21 19 27 27 H 1.08998 * 109.46965 * 90.00305 * 1 2 3 28 28 H 1.08996 * 109.46699 * 210.00050 * 1 2 3 29 29 H 1.09000 * 109.47050 * 329.99766 * 1 2 3 30 30 H 1.08999 * 109.47092 * 322.41859 * 3 2 1 31 31 H 1.09002 * 109.46889 * 202.41627 * 3 2 1 32 32 H 1.08002 * 119.96179 * 0.02729 * 5 4 3 33 33 H 1.07996 * 119.92553 * 179.97438 * 6 5 4 34 34 H 1.07999 * 119.96396 * 180.29706 * 7 6 5 35 35 H 1.08007 * 120.03097 * 179.74716 * 8 7 6 36 36 H 1.08991 * 110.66695 * 278.15849 * 11 10 9 37 37 H 1.09002 * 110.66218 * 41.28853 * 11 10 9 38 38 H 1.09003 * 110.72697 * 204.22743 * 12 11 10 39 39 H 1.09000 * 110.72366 * 80.94400 * 12 11 10 40 40 H 1.08995 * 110.30897 * 263.04021 * 13 12 11 41 41 H 1.08993 * 110.30627 * 140.86895 * 13 12 11 42 42 H 1.09003 * 109.91897 * 333.51219 * 14 10 9 43 43 H 1.09006 * 109.91685 * 94.80709 * 14 10 9 44 44 H 0.97005 * 120.00389 * 0.02562 * 17 15 2 45 45 H 1.08995 * 109.47060 * 300.00399 * 18 17 15 46 46 H 1.09001 * 109.46672 * 60.00291 * 18 17 15 47 47 H 0.97001 * 120.00129 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.2864 1.7976 1.4084 5 6 1.4134 2.7795 1.8346 6 6 1.4945 3.2656 3.1264 7 6 2.4454 2.7665 3.9980 8 6 3.3246 1.7887 3.5768 9 6 3.2463 1.2985 2.2792 10 7 4.1304 0.3052 1.8516 11 6 5.5407 0.7419 2.0145 12 6 6.3276 -0.5928 2.0123 13 6 5.3902 -1.5481 2.7862 14 6 3.9898 -0.9179 2.6711 15 6 2.1389 -1.1672 0.0005 16 8 3.3523 -1.1686 -0.0769 17 7 1.4678 -2.3327 0.0869 18 6 2.2003 -3.6015 0.0869 19 6 1.2243 -4.7450 0.1915 20 1 0.1645 -4.5465 0.2523 21 6 1.6845 -6.0445 0.2106 22 7 2.9752 -6.2862 0.1370 23 14 0.4748 -7.4619 0.3409 24 1 -0.4547 -7.4274 -0.8168 25 1 1.2173 -8.7480 0.3408 26 1 -0.2999 -7.3372 1.6016 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3632 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5139 30 1 1.6739 1.9906 -0.6268 31 1 3.2019 1.1084 -0.3919 32 1 0.6666 3.1680 1.1580 33 1 0.8110 4.0337 3.4569 34 1 2.5029 3.1450 5.0079 35 1 4.0695 1.4023 4.2567 36 1 5.8476 1.3708 1.1790 37 1 5.6743 1.2656 2.9611 38 1 7.2789 -0.4807 2.5325 39 1 6.4833 -0.9470 0.9933 40 1 5.6925 -1.6100 3.8316 41 1 5.3983 -2.5379 2.3299 42 1 3.6160 -0.6601 3.6621 43 1 3.3079 -1.6150 2.1839 44 1 0.4997 -2.3316 0.1484 45 1 2.7687 -3.6929 -0.8386 46 1 2.8828 -3.6270 0.9365 47 1 3.2990 -7.2005 0.1508 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426445043.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:34:20 Heat of formation + Delta-G solvation = 5.322194 kcal Electronic energy + Delta-G solvation = -28077.841454 eV Core-core repulsion = 24453.445272 eV Total energy + Delta-G solvation = -3624.396181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50298 -40.37941 -38.70412 -36.48152 -35.83356 -34.29539 -33.46483 -32.45651 -29.80657 -29.66386 -29.07144 -27.93985 -26.32648 -24.31537 -24.12678 -22.35570 -21.83716 -21.38992 -20.68894 -19.30765 -18.11325 -17.89726 -17.24467 -17.10131 -16.78459 -16.49738 -16.02407 -15.90070 -15.21678 -15.01305 -14.89590 -14.64236 -14.56535 -14.10193 -13.94272 -13.79114 -13.67841 -13.38958 -13.17762 -13.05576 -12.94635 -12.82769 -12.66732 -12.65046 -12.32626 -12.19693 -12.13804 -12.09435 -11.90142 -11.50250 -11.43317 -10.73648 -10.71921 -9.74871 -9.66949 -9.47977 -9.28488 -9.13173 -8.24793 -6.40459 0.37929 0.44026 1.42506 1.46688 1.54582 2.08719 2.40997 2.61530 2.87991 3.04394 3.09726 3.46909 3.73149 3.88380 3.94791 3.96702 4.02791 4.20670 4.27772 4.36180 4.39296 4.48185 4.55717 4.63140 4.70182 4.75887 4.82526 4.83885 4.90835 4.92167 5.00102 5.00878 5.11893 5.17777 5.22795 5.30446 5.38730 5.49362 5.55188 5.60495 5.67383 5.80714 5.91127 5.96208 5.97362 6.02009 6.33152 6.63616 6.72037 7.29333 7.45232 8.05880 8.86878 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.014663 B = 0.004232 C = 0.003686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1909.148739 B = 6614.558532 C = 7593.518794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.629 5.629 3 C 0.185 3.815 4 C -0.100 4.100 5 C -0.100 4.100 6 C -0.126 4.126 7 C -0.112 4.112 8 C -0.168 4.168 9 C 0.078 3.922 10 N -0.467 5.467 11 C 0.046 3.954 12 C -0.109 4.109 13 C -0.125 4.125 14 C 0.063 3.937 15 C 0.686 3.314 16 O -0.591 6.591 17 N -0.737 5.737 18 C 0.300 3.700 19 C -0.555 4.555 20 H 0.076 0.924 21 C 0.008 3.992 22 N -0.928 5.928 23 Si 0.980 3.020 24 H -0.263 1.263 25 H -0.284 1.284 26 H -0.264 1.264 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.102 0.898 31 H 0.071 0.929 32 H 0.152 0.848 33 H 0.152 0.848 34 H 0.141 0.859 35 H 0.116 0.884 36 H 0.078 0.922 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.052 0.948 40 H 0.082 0.918 41 H 0.042 0.958 42 H 0.037 0.963 43 H 0.042 0.958 44 H 0.394 0.606 45 H -0.023 1.023 46 H -0.018 1.018 47 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.835 21.059 6.709 22.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.368 5.368 3 C 0.062 3.938 4 C -0.102 4.102 5 C -0.119 4.119 6 C -0.144 4.144 7 C -0.131 4.131 8 C -0.188 4.188 9 C -0.016 4.016 10 N -0.187 5.187 11 C -0.080 4.080 12 C -0.147 4.147 13 C -0.163 4.163 14 C -0.064 4.064 15 C 0.387 3.613 16 O -0.468 6.468 17 N -0.393 5.393 18 C 0.176 3.824 19 C -0.593 4.593 20 H 0.094 0.906 21 C -0.192 4.192 22 N -0.567 5.567 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.210 1.210 26 H -0.189 1.189 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.112 0.888 30 H 0.120 0.880 31 H 0.089 0.911 32 H 0.170 0.830 33 H 0.169 0.831 34 H 0.159 0.841 35 H 0.134 0.866 36 H 0.097 0.903 37 H 0.075 0.925 38 H 0.113 0.887 39 H 0.071 0.929 40 H 0.101 0.899 41 H 0.061 0.939 42 H 0.055 0.945 43 H 0.061 0.939 44 H 0.230 0.770 45 H -0.005 1.005 46 H 0.000 1.000 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.917 20.765 6.062 21.827 hybrid contribution -0.307 -1.229 0.848 1.525 sum -3.224 19.536 6.910 20.971 Atomic orbital electron populations 1.21810 0.78665 1.03446 1.02343 1.47002 1.06856 1.03906 1.78996 1.19995 0.98034 0.83345 0.92403 1.20379 0.95628 0.97323 0.96882 1.21311 0.97966 0.95619 0.96958 1.21477 0.98873 1.00586 0.93421 1.21314 0.95010 0.96086 1.00669 1.21767 1.01299 0.99695 0.96037 1.19289 0.95459 0.94253 0.92637 1.62373 1.03082 1.01904 1.51388 1.23271 0.87164 0.96957 1.00566 1.22358 0.98121 0.94084 1.00179 1.22290 0.94458 0.98879 1.00704 1.22622 0.97949 0.92042 0.93784 1.16221 0.85527 0.81034 0.78490 1.90908 1.12584 1.86168 1.57176 1.45521 1.10050 1.05044 1.78689 1.18171 0.91312 0.79662 0.93248 1.21569 0.93926 0.91331 1.52448 0.90585 1.25981 0.97237 1.01983 0.94013 1.70138 1.15070 1.21503 1.49939 0.85281 0.78168 0.76838 0.79360 1.18769 1.20970 1.18864 0.91692 0.92427 0.88814 0.87953 0.91058 0.83045 0.83052 0.84134 0.86612 0.90331 0.92497 0.88662 0.92916 0.89895 0.93930 0.94492 0.93903 0.77011 1.00472 1.00015 0.92397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.84 10.31 127.77 1.32 3.16 16 2 N -0.63 -20.14 2.86 -869.31 -2.49 -22.63 16 3 C 0.19 5.17 5.34 85.63 0.46 5.62 16 4 C -0.10 -2.60 5.45 -19.74 -0.11 -2.70 16 5 C -0.10 -1.86 9.66 22.25 0.22 -1.65 16 6 C -0.13 -2.10 10.04 22.29 0.22 -1.88 16 7 C -0.11 -2.16 10.04 22.25 0.22 -1.94 16 8 C -0.17 -4.19 7.90 22.40 0.18 -4.01 16 9 C 0.08 2.32 4.82 38.21 0.18 2.50 16 10 N -0.47 -15.97 2.28 -682.77 -1.56 -17.52 16 11 C 0.05 1.35 6.41 86.65 0.56 1.90 16 12 C -0.11 -3.31 7.06 31.80 0.22 -3.09 16 13 C -0.13 -4.33 6.93 31.48 0.22 -4.11 16 14 C 0.06 2.36 5.77 86.45 0.50 2.86 16 15 C 0.69 29.68 6.93 179.06 1.24 30.92 16 16 O -0.59 -29.65 12.17 -4.00 -0.05 -29.70 16 17 N -0.74 -33.74 5.43 -482.29 -2.62 -36.36 16 18 C 0.30 17.10 5.43 85.63 0.46 17.57 16 19 C -0.55 -31.25 9.28 25.60 0.24 -31.01 16 20 H 0.08 3.93 7.60 -2.91 -0.02 3.90 16 21 C 0.01 0.43 5.46 84.65 0.46 0.89 16 22 N -0.93 -56.93 13.29 21.45 0.28 -56.65 16 23 Si 0.98 43.32 29.54 68.60 2.03 45.34 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.42 6.20 -2.39 -0.01 1.40 16 29 H 0.09 1.58 8.07 -2.39 -0.02 1.56 16 30 H 0.10 2.06 7.99 -2.39 -0.02 2.04 16 31 H 0.07 2.48 6.80 -2.39 -0.02 2.47 16 32 H 0.15 1.87 8.04 -2.91 -0.02 1.85 16 33 H 0.15 1.56 8.06 -2.91 -0.02 1.53 16 34 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 35 H 0.12 2.79 7.05 -2.91 -0.02 2.77 16 36 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.06 1.42 6.62 -2.39 -0.02 1.41 16 38 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 39 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 40 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.04 1.29 6.72 -2.39 -0.02 1.28 16 43 H 0.04 2.04 6.13 -2.38 -0.01 2.02 16 44 H 0.39 15.72 5.98 -92.70 -0.55 15.16 16 45 H -0.02 -1.47 8.14 -2.39 -0.02 -1.48 16 46 H -0.02 -1.16 8.14 -2.39 -0.02 -1.18 16 47 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -74.57 370.49 2.60 -71.96 By element: Atomic # 1 Polarization: 30.11 SS G_CDS: 0.41 Total: 30.52 kcal Atomic # 6 Polarization: 8.44 SS G_CDS: 6.59 Total: 15.03 kcal Atomic # 7 Polarization: -126.78 SS G_CDS: -6.38 Total: -133.16 kcal Atomic # 8 Polarization: -29.65 SS G_CDS: -0.05 Total: -29.70 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.34 kcal Total: -74.57 2.60 -71.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426445043.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.287 kcal (2) G-P(sol) polarization free energy of solvation -74.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds