Wall clock time and date at job start Tue Mar 31 2020 11:20:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.50697 * 109.46882 * 66.17766 * 6 5 4 8 8 C 1.38356 * 119.85627 * 269.72527 * 7 6 5 9 9 C 1.37958 * 120.14569 * 179.72739 * 8 7 6 10 10 C 1.39570 * 119.85002 * 0.52947 * 9 8 7 11 11 C 1.47848 * 120.14130 * 179.77103 * 10 9 8 12 12 O 1.21556 * 119.99809 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00295 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.50708 * 109.46977 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99913 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99797 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00336 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46878 * 89.99977 * 19 17 15 21 21 H 1.48496 * 109.47430 * 210.00179 * 19 17 15 22 22 H 1.48504 * 109.47121 * 330.00674 * 19 17 15 23 23 C 1.39573 * 119.71498 * 359.74244 * 10 9 8 24 24 C 1.37958 * 119.84919 * 0.02562 * 23 10 9 25 25 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 26 26 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 27 27 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 28 28 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 30 30 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 31 31 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 32 32 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 33 33 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 34 34 H 1.09001 * 109.46898 * 186.18135 * 6 5 4 35 35 H 1.08997 * 109.46990 * 306.17810 * 6 5 4 36 36 H 1.08006 * 119.92865 * 0.02562 * 8 7 6 37 37 H 1.08004 * 120.07323 * 180.27256 * 9 8 7 38 38 H 0.96998 * 119.99813 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.47307 * 299.99287 * 14 13 11 40 40 H 1.09000 * 109.47282 * 59.99500 * 14 13 11 41 41 H 0.97002 * 120.00395 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.07391 * 179.97438 * 23 10 9 43 43 H 1.08002 * 119.92490 * 179.97438 * 24 23 10 44 44 H 1.09002 * 109.48806 * 180.71933 * 25 5 4 45 45 H 1.09003 * 109.49203 * 60.65575 * 25 5 4 46 46 H 1.09001 * 109.48625 * 296.77747 * 26 2 1 47 47 H 1.09003 * 109.48941 * 56.82355 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0214 1.9650 1.3067 8 6 6.2565 2.8109 0.2374 9 6 6.7110 4.0949 0.4566 10 6 6.9442 4.5362 1.7600 11 6 7.4361 5.9093 2.0021 12 8 7.6379 6.2911 3.1383 13 7 7.6608 6.7376 0.9629 14 6 8.1488 8.0979 1.2028 15 6 8.3170 8.8108 -0.1143 16 1 8.0842 8.3013 -1.0377 17 6 8.7682 10.1134 -0.1404 18 7 8.9145 10.7356 -1.2897 19 14 9.1703 10.9949 1.4567 20 1 10.5972 10.7695 1.8007 21 1 8.9241 12.4503 1.2944 22 1 8.3093 10.4654 2.5446 23 6 6.7104 3.6759 2.8340 24 6 6.2513 2.3960 2.6011 25 6 3.5234 -0.8061 1.0599 26 6 1.9956 -0.7632 1.1402 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6014 1.9128 -0.8603 31 1 1.6935 1.8775 0.9171 32 1 3.8258 0.8485 -1.0102 33 1 3.9176 2.3453 -0.0506 34 1 5.8823 -0.0948 1.8473 35 1 5.8824 0.2142 0.0944 36 1 6.0792 2.4669 -0.7710 37 1 6.8899 4.7557 -0.3787 38 1 7.5002 6.4328 0.0562 39 1 7.4305 8.6382 1.8195 40 1 9.1088 8.0542 1.7171 41 1 9.2316 11.6522 -1.3082 42 1 6.8893 4.0112 3.8449 43 1 6.0704 1.7291 3.4312 44 1 3.9176 -1.3470 1.9202 45 1 3.8253 -1.3116 0.1426 46 1 1.6936 -0.2820 2.0704 47 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427626539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:12 Heat of formation + Delta-G solvation = 2.198540 kcal Electronic energy + Delta-G solvation = -25724.806137 eV Core-core repulsion = 22100.274504 eV Total energy + Delta-G solvation = -3624.531633 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.18745 -39.40982 -38.07749 -35.79237 -34.39841 -32.54718 -31.92765 -31.33024 -30.84665 -29.05326 -27.80967 -25.80682 -24.08334 -23.67759 -22.73453 -22.28688 -21.36576 -20.09720 -19.86170 -18.00518 -16.69006 -16.47956 -15.95884 -15.69073 -15.41833 -15.30347 -15.07279 -14.74882 -14.66973 -14.51665 -14.38563 -14.16290 -13.72478 -13.53971 -12.90797 -12.86898 -12.76147 -12.54726 -12.36201 -12.29266 -11.99892 -11.95279 -11.67676 -11.56945 -11.19070 -11.05280 -11.03235 -10.97241 -10.77903 -9.98247 -9.51241 -9.34510 -8.96849 -8.90415 -8.79896 -8.77459 -8.56752 -8.15483 -6.22494 -4.24973 0.91867 1.39078 3.10286 3.26546 3.33200 3.41749 3.53770 3.66714 3.93112 4.11486 4.32815 4.46936 4.49571 4.65474 4.68655 4.81707 4.92479 4.96438 4.99340 5.06402 5.12877 5.13845 5.16010 5.19663 5.31058 5.32081 5.40339 5.42856 5.47970 5.52596 5.60048 5.65083 5.70166 5.83207 5.98544 6.29789 6.44770 6.45202 6.52756 6.57811 6.74172 6.76143 6.80050 6.89837 7.05311 7.18694 7.36437 8.11190 8.47866 8.72835 8.87934 9.37296 10.89346 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.002312 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.955576 B =12106.442499 C =12742.921469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.056 3.944 4 C 0.052 3.948 5 N -0.535 5.535 6 C 0.095 3.905 7 C -0.065 4.065 8 C -0.122 4.122 9 C -0.086 4.086 10 C -0.120 4.120 11 C 0.540 3.460 12 O -0.555 6.555 13 N -0.698 5.698 14 C 0.219 3.781 15 C -0.544 4.544 16 H 0.080 0.920 17 C 0.078 3.922 18 N -0.892 5.892 19 Si 0.877 3.123 20 H -0.273 1.273 21 H -0.283 1.283 22 H -0.260 1.260 23 C -0.065 4.065 24 C -0.108 4.108 25 C 0.057 3.943 26 C 0.057 3.943 27 H 0.069 0.931 28 H 0.067 0.933 29 H 0.026 0.974 30 H 0.080 0.920 31 H 0.044 0.956 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.046 0.954 36 H 0.123 0.877 37 H 0.130 0.870 38 H 0.396 0.604 39 H 0.027 0.973 40 H 0.023 0.977 41 H 0.268 0.732 42 H 0.135 0.865 43 H 0.126 0.874 44 H 0.080 0.920 45 H 0.043 0.957 46 H 0.043 0.957 47 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.446 -26.022 2.591 29.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.072 4.072 4 C -0.076 4.076 5 N -0.260 5.260 6 C -0.032 4.032 7 C -0.066 4.066 8 C -0.141 4.141 9 C -0.105 4.105 10 C -0.124 4.124 11 C 0.326 3.674 12 O -0.436 6.436 13 N -0.346 5.346 14 C 0.097 3.903 15 C -0.582 4.582 16 H 0.098 0.902 17 C -0.126 4.126 18 N -0.529 5.529 19 Si 0.703 3.297 20 H -0.198 1.198 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.084 4.084 24 C -0.126 4.126 25 C -0.071 4.071 26 C -0.072 4.072 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.045 0.955 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.064 0.936 36 H 0.141 0.859 37 H 0.148 0.852 38 H 0.231 0.769 39 H 0.045 0.955 40 H 0.041 0.959 41 H 0.078 0.922 42 H 0.152 0.848 43 H 0.144 0.856 44 H 0.098 0.902 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.240 -25.528 3.281 28.944 hybrid contribution 0.152 0.511 0.183 0.564 sum -13.088 -25.017 3.464 28.445 Atomic orbital electron populations 1.22345 0.87101 1.02018 1.00867 1.62179 1.07929 1.14263 1.42796 1.22184 0.94628 0.89059 1.01333 1.22274 0.94185 0.99495 0.91596 1.62150 1.06806 1.13632 1.43367 1.21037 0.87142 0.93843 1.01221 1.19799 0.97985 0.95335 0.93482 1.20948 1.00835 0.93729 0.98583 1.21372 0.97008 0.95989 0.96156 1.20211 1.03000 0.95025 0.94133 1.18326 0.78698 0.84875 0.85478 1.90716 1.53555 1.77003 1.22277 1.46143 1.64844 1.15126 1.08510 1.19542 0.94541 0.78135 0.98048 1.21074 1.46779 0.98462 0.91886 0.90241 1.24792 0.94310 0.96956 0.96551 1.69877 1.45520 1.12563 1.24922 0.86814 0.79726 0.79035 0.84119 1.19810 1.20867 1.18471 1.21279 0.95262 0.92539 0.99269 1.20920 0.99662 0.95818 0.96249 1.22160 0.94420 0.89366 1.01148 1.22164 0.94480 0.98408 0.92122 0.91257 0.91409 0.95505 0.90157 0.93802 0.93919 0.89367 0.89704 0.93601 0.85885 0.85230 0.76915 0.95489 0.95948 0.92235 0.84763 0.85638 0.90157 0.93903 0.93886 0.90331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.60 60.06 0.58 0.74 16 2 N -0.55 -4.44 4.97 -242.75 -1.21 -5.64 16 3 C 0.06 0.48 5.62 -3.76 -0.02 0.46 16 4 C 0.05 0.46 5.26 -3.76 -0.02 0.45 16 5 N -0.53 -4.65 4.70 -235.91 -1.11 -5.76 16 6 C 0.09 0.78 5.11 -4.98 -0.03 0.76 16 7 C -0.07 -0.68 4.89 -104.54 -0.51 -1.19 16 8 C -0.12 -1.32 7.90 -39.64 -0.31 -1.64 16 9 C -0.09 -1.13 9.54 -39.19 -0.37 -1.50 16 10 C -0.12 -1.90 5.87 -104.97 -0.62 -2.52 16 11 C 0.54 10.91 7.77 -12.33 -0.10 10.81 16 12 O -0.56 -13.08 16.35 5.32 0.09 -12.99 16 13 N -0.70 -14.59 5.50 -62.43 -0.34 -14.93 16 14 C 0.22 5.47 4.50 -5.19 -0.02 5.44 16 15 C -0.54 -14.96 9.83 -34.44 -0.34 -15.30 16 16 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 17 C 0.08 2.20 5.47 -17.82 -0.10 2.11 16 18 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 19 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 20 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 22 H -0.26 -6.36 6.54 56.52 0.37 -5.99 16 23 C -0.06 -0.91 9.60 -39.19 -0.38 -1.28 16 24 C -0.11 -1.22 9.68 -39.64 -0.38 -1.61 16 25 C 0.06 0.41 5.61 -3.77 -0.02 0.39 16 26 C 0.06 0.41 5.62 -3.76 -0.02 0.39 16 27 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.37 8.13 -51.93 -0.42 -0.05 16 29 H 0.03 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.85 5.96 -51.93 -0.31 0.54 16 34 H 0.08 0.61 7.97 -51.93 -0.41 0.19 16 35 H 0.05 0.36 8.06 -51.93 -0.42 -0.06 16 36 H 0.12 1.08 8.01 -52.48 -0.42 0.66 16 37 H 0.13 1.56 6.41 -52.48 -0.34 1.23 16 38 H 0.40 7.25 6.36 -40.82 -0.26 6.99 16 39 H 0.03 0.71 7.20 -51.93 -0.37 0.33 16 40 H 0.02 0.58 7.57 -51.93 -0.39 0.19 16 41 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.13 1.93 7.65 -52.49 -0.40 1.53 16 43 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.08 0.48 8.07 -51.93 -0.42 0.06 16 45 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.08 0.46 8.13 -51.93 -0.42 0.04 16 LS Contribution 376.28 15.07 5.67 5.67 Total: -1.00 -32.49 376.28 -11.01 -43.50 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -7.55 Total: 2.50 kcal Atomic # 6 Polarization: -0.83 SS G_CDS: -2.66 Total: -3.50 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: -1.88 Total: -52.00 kcal Atomic # 8 Polarization: -13.08 SS G_CDS: 0.09 Total: -12.99 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.49 -11.01 -43.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.694 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds