Wall clock time and date at job start Tue Mar 31 2020 11:20:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46956 * 111.00293 * 2 1 4 4 C 1.53056 * 109.38342 * 183.17592 * 3 2 1 5 5 N 1.46963 * 109.35944 * 301.62902 * 4 3 2 6 6 C 1.46903 * 110.99595 * 183.16796 * 5 4 3 7 7 C 1.50697 * 109.46882 * 66.17766 * 6 5 4 8 8 C 1.38356 * 119.85627 * 269.72527 * 7 6 5 9 9 C 1.37958 * 120.14569 * 179.72739 * 8 7 6 10 10 C 1.39570 * 119.85002 * 0.52947 * 9 8 7 11 11 C 1.47848 * 120.14130 * 179.77103 * 10 9 8 12 12 O 1.21556 * 119.99809 * 179.97438 * 11 10 9 13 13 N 1.34777 * 120.00295 * 359.97438 * 11 10 9 14 14 C 1.46496 * 120.00036 * 180.02562 * 13 11 10 15 15 C 1.50708 * 109.46977 * 179.97438 * 14 13 11 16 16 H 1.08001 * 119.99913 * 359.97438 * 15 14 13 17 17 C 1.37876 * 119.99797 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99907 * 180.02562 * 17 15 14 19 19 Si 1.86800 * 120.00336 * 359.97438 * 17 15 14 20 20 H 1.48502 * 109.46878 * 89.99977 * 19 17 15 21 21 H 1.48496 * 109.47430 * 210.00179 * 19 17 15 22 22 H 1.48504 * 109.47121 * 330.00674 * 19 17 15 23 23 C 1.39573 * 119.71498 * 359.74244 * 10 9 8 24 24 C 1.37958 * 119.84919 * 0.02562 * 23 10 9 25 25 C 1.46956 * 110.89784 * 59.28921 * 5 4 3 26 26 C 1.46962 * 110.99604 * 123.79812 * 2 1 3 27 27 H 1.09006 * 109.46670 * 60.00118 * 1 2 3 28 28 H 1.09000 * 109.47249 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47127 * 300.00706 * 1 2 3 30 30 H 1.09002 * 109.48806 * 303.15319 * 3 2 1 31 31 H 1.09002 * 109.49141 * 63.19591 * 3 2 1 32 32 H 1.08992 * 109.49038 * 61.57437 * 4 3 2 33 33 H 1.08994 * 109.48641 * 181.64718 * 4 3 2 34 34 H 1.09001 * 109.46898 * 186.18135 * 6 5 4 35 35 H 1.08997 * 109.46990 * 306.17810 * 6 5 4 36 36 H 1.08006 * 119.92865 * 0.02562 * 8 7 6 37 37 H 1.08004 * 120.07323 * 180.27256 * 9 8 7 38 38 H 0.96998 * 119.99813 * 359.97438 * 13 11 10 39 39 H 1.09004 * 109.47307 * 299.99287 * 14 13 11 40 40 H 1.09000 * 109.47282 * 59.99500 * 14 13 11 41 41 H 0.97002 * 120.00395 * 179.97438 * 18 17 15 42 42 H 1.08001 * 120.07391 * 179.97438 * 23 10 9 43 43 H 1.08002 * 119.92490 * 179.97438 * 24 23 10 44 44 H 1.09002 * 109.48806 * 180.71933 * 25 5 4 45 45 H 1.09003 * 109.49203 * 60.65575 * 25 5 4 46 46 H 1.09001 * 109.48625 * 296.77747 * 26 2 1 47 47 H 1.09003 * 109.48941 * 56.82355 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3719 0.0000 4 6 3.5236 1.3295 -0.0800 5 7 4.0501 0.5658 1.0599 6 6 5.5191 0.5658 1.0600 7 6 6.0214 1.9650 1.3067 8 6 6.2565 2.8109 0.2374 9 6 6.7110 4.0949 0.4566 10 6 6.9442 4.5362 1.7600 11 6 7.4361 5.9093 2.0021 12 8 7.6379 6.2911 3.1383 13 7 7.6608 6.7376 0.9629 14 6 8.1488 8.0979 1.2028 15 6 8.3170 8.8108 -0.1143 16 1 8.0842 8.3013 -1.0377 17 6 8.7682 10.1134 -0.1404 18 7 8.9145 10.7356 -1.2897 19 14 9.1703 10.9949 1.4567 20 1 10.5972 10.7695 1.8007 21 1 8.9241 12.4503 1.2944 22 1 8.3093 10.4654 2.5446 23 6 6.7104 3.6759 2.8340 24 6 6.2513 2.3960 2.6011 25 6 3.5234 -0.8061 1.0599 26 6 1.9956 -0.7632 1.1402 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 1.6014 1.9128 -0.8603 31 1 1.6935 1.8775 0.9171 32 1 3.8258 0.8485 -1.0102 33 1 3.9176 2.3453 -0.0506 34 1 5.8823 -0.0948 1.8473 35 1 5.8824 0.2142 0.0944 36 1 6.0792 2.4669 -0.7710 37 1 6.8899 4.7557 -0.3787 38 1 7.5002 6.4328 0.0562 39 1 7.4305 8.6382 1.8195 40 1 9.1088 8.0542 1.7171 41 1 9.2316 11.6522 -1.3082 42 1 6.8893 4.0112 3.8449 43 1 6.0704 1.7291 3.4312 44 1 3.9176 -1.3470 1.9202 45 1 3.8253 -1.3116 0.1426 46 1 1.6936 -0.2820 2.0704 47 1 1.6009 -1.7789 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427626539.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:11 Heat of formation + Delta-G solvation = -21.433994 kcal Electronic energy + Delta-G solvation = -25725.830920 eV Core-core repulsion = 22100.274504 eV Total energy + Delta-G solvation = -3625.556417 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.27091 -40.37588 -39.23669 -36.49571 -36.27308 -34.51414 -32.96424 -32.12040 -31.69992 -30.28299 -29.20406 -26.68750 -24.85380 -24.56496 -24.02029 -23.33767 -22.68112 -21.30974 -20.71227 -19.59999 -18.34154 -17.30350 -17.24868 -16.72450 -16.34333 -16.26150 -16.18987 -15.98581 -15.77883 -15.57533 -15.38489 -15.09445 -14.93074 -14.56885 -14.52119 -14.30905 -14.03153 -13.50511 -13.34250 -13.15604 -13.07771 -12.97260 -12.72460 -12.66045 -12.37651 -12.21227 -11.98702 -11.91780 -11.76010 -11.69927 -11.66772 -10.99385 -10.93911 -10.12873 -9.93026 -9.75141 -9.41740 -9.21811 -8.41859 -6.49265 -0.17474 0.42721 1.31706 1.33769 1.46607 1.83316 2.26433 2.36352 2.74797 2.93387 2.98184 3.15512 3.65399 3.82210 3.87879 3.91916 4.02632 4.10662 4.20657 4.27157 4.38626 4.42322 4.44307 4.55814 4.62724 4.64298 4.66788 4.71210 4.76030 4.86145 4.88961 4.92566 4.97742 5.00566 5.02329 5.05838 5.08835 5.21351 5.30788 5.42112 5.44145 5.55314 5.89631 5.95238 5.97391 6.06087 6.15108 6.16311 6.50077 6.74771 7.11489 7.29125 8.72676 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.021600 B = 0.002312 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1295.955576 B =12106.442499 C =12742.921469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.555 5.555 3 C 0.057 3.943 4 C 0.055 3.945 5 N -0.545 5.545 6 C 0.097 3.903 7 C -0.051 4.051 8 C -0.116 4.116 9 C -0.087 4.087 10 C -0.147 4.147 11 C 0.540 3.460 12 O -0.596 6.596 13 N -0.699 5.699 14 C 0.231 3.769 15 C -0.548 4.548 16 H 0.060 0.940 17 C 0.028 3.972 18 N -0.929 5.929 19 Si 0.937 3.063 20 H -0.264 1.264 21 H -0.271 1.271 22 H -0.262 1.262 23 C -0.074 4.074 24 C -0.103 4.103 25 C 0.059 3.941 26 C 0.056 3.944 27 H 0.071 0.929 28 H 0.079 0.921 29 H 0.023 0.977 30 H 0.084 0.916 31 H 0.029 0.971 32 H 0.045 0.955 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.058 0.942 36 H 0.149 0.851 37 H 0.135 0.865 38 H 0.408 0.592 39 H 0.014 0.986 40 H 0.014 0.986 41 H 0.273 0.727 42 H 0.124 0.876 43 H 0.151 0.849 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.032 0.968 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.106 -28.595 2.787 32.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.280 5.280 3 C -0.071 4.071 4 C -0.073 4.073 5 N -0.270 5.270 6 C -0.030 4.030 7 C -0.051 4.051 8 C -0.134 4.134 9 C -0.106 4.106 10 C -0.151 4.151 11 C 0.329 3.671 12 O -0.479 6.479 13 N -0.348 5.348 14 C 0.107 3.893 15 C -0.586 4.586 16 H 0.079 0.921 17 C -0.173 4.173 18 N -0.567 5.567 19 Si 0.760 3.240 20 H -0.189 1.189 21 H -0.196 1.196 22 H -0.186 1.186 23 C -0.093 4.093 24 C -0.121 4.121 25 C -0.069 4.069 26 C -0.072 4.072 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.041 0.959 30 H 0.102 0.898 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.121 0.879 35 H 0.076 0.924 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.244 0.756 39 H 0.032 0.968 40 H 0.032 0.968 41 H 0.082 0.918 42 H 0.142 0.858 43 H 0.168 0.832 44 H 0.114 0.886 45 H 0.062 0.938 46 H 0.051 0.949 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -13.913 -28.133 3.455 31.574 hybrid contribution 0.270 1.157 0.057 1.189 sum -13.643 -26.976 3.512 30.433 Atomic orbital electron populations 1.22382 0.86313 1.02786 1.00835 1.62225 1.08777 1.13824 1.43203 1.22148 0.94727 0.89481 1.00755 1.22217 0.94220 0.99049 0.91846 1.62138 1.06970 1.14611 1.43303 1.21083 0.86973 0.92361 1.02594 1.20135 0.95835 0.96314 0.92861 1.21220 0.99479 0.92600 1.00128 1.21460 0.96883 0.97172 0.95044 1.19904 1.06251 0.92887 0.96028 1.18995 0.77392 0.86273 0.84421 1.90676 1.55314 1.78179 1.23720 1.45974 1.65229 1.13958 1.09639 1.19164 0.93870 0.79981 0.96266 1.21246 1.46318 0.98758 0.92236 0.92146 1.25586 0.94230 0.97829 0.99659 1.69971 1.46589 1.13245 1.26901 0.85864 0.79750 0.78312 0.80026 1.18884 1.19606 1.18621 1.21306 0.95973 0.93622 0.98369 1.21150 0.98543 0.94782 0.97634 1.22207 0.94235 0.88541 1.01876 1.22220 0.94730 0.98945 0.91326 0.90974 0.90245 0.95873 0.89799 0.95294 0.93723 0.90305 0.87903 0.92418 0.83315 0.84750 0.75550 0.96779 0.96832 0.91758 0.85841 0.83173 0.88573 0.93840 0.94921 0.88826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.60 127.69 1.23 1.51 16 2 N -0.56 -7.97 4.97 -921.91 -4.58 -12.55 16 3 C 0.06 0.90 5.62 86.31 0.49 1.39 16 4 C 0.05 0.85 5.26 86.31 0.45 1.30 16 5 N -0.55 -7.86 4.70 -900.27 -4.23 -12.09 16 6 C 0.10 1.23 5.11 85.56 0.44 1.67 16 7 C -0.05 -0.90 4.89 -19.81 -0.10 -1.00 16 8 C -0.12 -2.22 7.90 22.23 0.18 -2.04 16 9 C -0.09 -2.18 9.54 22.52 0.21 -1.96 16 10 C -0.15 -4.66 5.87 -20.09 -0.12 -4.77 16 11 C 0.54 22.34 7.77 86.79 0.67 23.02 16 12 O -0.60 -28.95 16.35 -3.89 -0.06 -29.01 16 13 N -0.70 -29.86 5.50 -469.69 -2.58 -32.44 16 14 C 0.23 11.72 4.50 85.64 0.39 12.11 16 15 C -0.55 -30.72 9.83 25.60 0.25 -30.47 16 16 H 0.06 3.53 7.84 -2.91 -0.02 3.51 16 17 C 0.03 1.57 5.47 84.65 0.46 2.04 16 18 N -0.93 -55.65 13.96 21.45 0.30 -55.35 16 19 Si 0.94 44.58 27.47 68.60 1.88 46.46 16 20 H -0.26 -12.13 7.11 99.48 0.71 -11.43 16 21 H -0.27 -12.30 7.11 99.48 0.71 -11.59 16 22 H -0.26 -12.44 6.54 99.48 0.65 -11.79 16 23 C -0.07 -2.04 9.60 22.53 0.22 -1.82 16 24 C -0.10 -2.09 9.68 22.23 0.22 -1.87 16 25 C 0.06 0.67 5.61 86.31 0.48 1.16 16 26 C 0.06 0.68 5.62 86.31 0.49 1.17 16 27 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 28 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 29 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 30 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.04 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.08 1.35 5.96 -2.39 -0.01 1.34 16 34 H 0.10 1.00 7.97 -2.39 -0.02 0.98 16 35 H 0.06 0.65 8.06 -2.39 -0.02 0.63 16 36 H 0.15 2.10 8.01 -2.91 -0.02 2.08 16 37 H 0.13 3.15 6.41 -2.91 -0.02 3.13 16 38 H 0.41 15.23 6.36 -92.71 -0.59 14.64 16 39 H 0.01 0.76 7.20 -2.38 -0.02 0.74 16 40 H 0.01 0.72 7.57 -2.39 -0.02 0.70 16 41 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 42 H 0.12 3.62 7.65 -2.91 -0.02 3.59 16 43 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 44 H 0.10 0.80 8.07 -2.39 -0.02 0.78 16 45 H 0.04 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 47 H 0.09 0.85 8.13 -2.39 -0.02 0.83 16 Total: -1.00 -70.69 376.28 -3.01 -73.69 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: 0.31 Total: 19.87 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: 5.95 Total: 1.42 kcal Atomic # 7 Polarization: -101.34 SS G_CDS: -11.09 Total: -112.43 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.06 Total: -29.01 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.88 Total: 46.46 kcal Total: -70.69 -3.01 -73.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427626539.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.260 kcal (2) G-P(sol) polarization free energy of solvation -70.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.008 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds