Wall clock time and date at job start Tue Mar 31 2020 11:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 110.99692 * 2 1 4 4 C 1.53058 * 109.36694 * 183.18812 * 3 2 1 5 5 N 1.46956 * 109.35953 * 301.60067 * 4 3 2 6 6 C 1.46897 * 110.99803 * 183.18737 * 5 4 3 7 7 H 1.09000 * 109.47067 * 297.02652 * 6 5 4 8 8 C 1.50698 * 109.47123 * 177.03107 * 6 5 4 9 9 O 1.21282 * 120.00343 * 332.18451 * 8 6 5 10 10 N 1.34783 * 120.00110 * 151.91506 * 8 6 5 11 11 C 1.46499 * 120.00000 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.46974 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99899 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99928 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00117 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46927 * 90.00102 * 16 14 12 18 18 H 1.48494 * 109.47359 * 209.99885 * 16 14 12 19 19 H 1.48501 * 109.47070 * 330.00106 * 16 14 12 20 20 C 1.50700 * 109.47278 * 57.03280 * 6 5 4 21 21 C 1.38234 * 120.00245 * 45.42316 * 20 6 5 22 22 C 1.38233 * 120.00193 * 179.76735 * 21 20 6 23 23 C 1.38239 * 119.99771 * 0.50914 * 22 21 20 24 24 C 1.38237 * 120.00060 * 359.75125 * 23 22 21 25 25 C 1.38229 * 119.99958 * 359.97438 * 24 23 22 26 26 C 1.46956 * 110.88320 * 59.31895 * 5 4 3 27 27 C 1.46957 * 111.00199 * 123.79554 * 2 1 3 28 28 H 1.09009 * 109.46964 * 60.00382 * 1 2 3 29 29 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47703 * 299.99994 * 1 2 3 31 31 H 1.08994 * 109.49349 * 63.21758 * 3 2 1 32 32 H 1.09004 * 109.50993 * 303.16089 * 3 2 1 33 33 H 1.08993 * 109.48958 * 181.63448 * 4 3 2 34 34 H 1.09003 * 109.50664 * 61.57026 * 4 3 2 35 35 H 0.96998 * 119.99949 * 0.02562 * 10 8 6 36 36 H 1.08998 * 109.47534 * 300.00067 * 11 10 8 37 37 H 1.08999 * 109.46906 * 60.00387 * 11 10 8 38 38 H 0.97001 * 119.99659 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.99738 * 0.02562 * 21 20 6 40 40 H 1.07993 * 120.00245 * 180.23352 * 22 21 20 41 41 H 1.07997 * 120.00018 * 179.72267 * 23 22 21 42 42 H 1.07997 * 119.99942 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.00073 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.49058 * 60.64277 * 26 5 4 45 45 H 1.08999 * 109.49110 * 180.71489 * 26 5 4 46 46 H 1.08996 * 109.48786 * 296.78603 * 27 2 1 47 47 H 1.08998 * 109.48403 * 56.84691 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0500 0.5660 1.0598 6 6 5.5190 0.5661 1.0599 7 1 5.8824 0.0652 0.1626 8 6 6.0213 -0.1621 2.2799 9 8 5.3476 -0.1930 3.2879 10 7 7.2169 -0.7836 2.2491 11 6 7.7054 -1.4910 3.4353 12 6 9.0544 -2.0944 3.1402 13 1 9.5031 -1.9637 2.1666 14 6 9.7157 -2.8135 4.1132 15 7 10.8932 -3.3397 3.8558 16 14 8.9399 -3.0389 5.7975 17 1 8.1120 -4.2716 5.8000 18 1 10.0078 -3.1578 6.8224 19 1 8.0833 -1.8665 6.1088 20 6 6.0213 1.9868 1.0805 21 6 5.4594 2.9060 1.9467 22 6 5.9235 4.2080 1.9691 23 6 6.9422 4.5933 1.1178 24 6 7.5004 3.6754 0.2478 25 6 7.0402 2.3721 0.2295 26 6 3.5234 -0.8059 1.0598 27 6 1.9957 -0.7631 1.1401 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6936 1.8774 0.9172 32 1 1.6013 1.9132 -0.8601 33 1 3.9176 2.3450 -0.0512 34 1 3.8257 0.8482 -1.0106 35 1 7.7541 -0.7618 1.4418 36 1 7.7943 -0.7902 4.2655 37 1 7.0042 -2.2820 3.7011 38 1 11.3583 -3.8459 4.5402 39 1 4.6608 2.6059 2.6089 40 1 5.4871 4.9251 2.6484 41 1 7.3017 5.6116 1.1321 42 1 8.2960 3.9766 -0.4175 43 1 7.4760 1.6551 -0.4505 44 1 3.8253 -1.3113 0.1425 45 1 3.9177 -1.3468 1.9201 46 1 1.6937 -0.2820 2.0704 47 1 1.6013 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427647996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:59 Heat of formation + Delta-G solvation = 10.522726 kcal Electronic energy + Delta-G solvation = -27267.585527 eV Core-core repulsion = 23643.414858 eV Total energy + Delta-G solvation = -3624.170669 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.43596 -38.69816 -38.35189 -35.47787 -34.25211 -32.44133 -31.84256 -31.02689 -30.77268 -28.79964 -27.98020 -25.75730 -23.79263 -23.38758 -22.52706 -22.26635 -21.13453 -19.93341 -19.61316 -17.41431 -16.91284 -16.48560 -16.07984 -15.59096 -15.16513 -15.12588 -14.94856 -14.77342 -14.54924 -14.31237 -14.17156 -13.78054 -13.54289 -13.27947 -12.95910 -12.87956 -12.63645 -12.44148 -12.28996 -12.12952 -11.94345 -11.83720 -11.32961 -11.24512 -11.05065 -11.01987 -10.89662 -10.73951 -10.70577 -9.97738 -9.51600 -9.41175 -8.85288 -8.77930 -8.61045 -8.51093 -8.29394 -8.14358 -6.21767 -4.23928 1.31743 1.47352 3.16085 3.26541 3.32853 3.41682 3.52654 3.76949 3.78679 4.27983 4.33480 4.70969 4.76948 4.89696 4.89910 5.02696 5.08074 5.13591 5.18316 5.21055 5.23102 5.27817 5.39763 5.40790 5.41891 5.50918 5.55666 5.64101 5.67425 5.70752 5.82342 5.94971 5.98285 5.99485 6.12123 6.47058 6.56203 6.58818 6.74894 6.80811 6.82641 6.98653 7.05007 7.06524 7.07578 7.22198 7.38414 8.13317 8.50312 8.74978 8.92018 9.38313 10.90189 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.004243 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.181158 B = 6597.539996 C = 8400.267355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.060 3.940 4 C 0.057 3.943 5 N -0.512 5.512 6 C 0.110 3.890 7 H 0.065 0.935 8 C 0.510 3.490 9 O -0.535 6.535 10 N -0.703 5.703 11 C 0.223 3.777 12 C -0.543 4.543 13 H 0.079 0.921 14 C 0.078 3.922 15 N -0.892 5.892 16 Si 0.876 3.124 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.261 1.261 20 C -0.077 4.077 21 C -0.081 4.081 22 C -0.127 4.127 23 C -0.118 4.118 24 C -0.123 4.123 25 C -0.108 4.108 26 C 0.054 3.946 27 C 0.061 3.939 28 H 0.066 0.934 29 H 0.067 0.933 30 H 0.025 0.975 31 H 0.043 0.957 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.041 0.959 35 H 0.395 0.605 36 H 0.025 0.975 37 H 0.020 0.980 38 H 0.267 0.733 39 H 0.132 0.868 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.122 0.878 43 H 0.122 0.878 44 H 0.041 0.959 45 H 0.092 0.908 46 H 0.045 0.955 47 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.930 12.833 -10.349 22.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.272 5.272 3 C -0.069 4.069 4 C -0.071 4.071 5 N -0.237 5.237 6 C -0.002 4.002 7 H 0.082 0.918 8 C 0.294 3.706 9 O -0.412 6.412 10 N -0.352 5.352 11 C 0.101 3.899 12 C -0.581 4.581 13 H 0.097 0.903 14 C -0.126 4.126 15 N -0.529 5.529 16 Si 0.702 3.298 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.185 1.185 20 C -0.078 4.078 21 C -0.099 4.099 22 C -0.145 4.145 23 C -0.137 4.137 24 C -0.141 4.141 25 C -0.127 4.127 26 C -0.074 4.074 27 C -0.067 4.067 28 H 0.085 0.915 29 H 0.086 0.914 30 H 0.044 0.956 31 H 0.061 0.939 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.060 0.940 35 H 0.228 0.772 36 H 0.043 0.957 37 H 0.038 0.962 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.138 0.862 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.140 0.860 44 H 0.059 0.941 45 H 0.110 0.890 46 H 0.064 0.936 47 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -16.248 12.658 -9.512 22.687 hybrid contribution 0.134 -0.238 0.500 0.570 sum -16.114 12.421 -9.012 22.252 Atomic orbital electron populations 1.22328 0.87359 1.02022 1.00521 1.62193 1.07699 1.14012 1.43298 1.22137 0.94465 0.89321 1.00930 1.22192 0.94152 0.99051 0.91675 1.61862 1.04714 1.14568 1.42527 1.20480 0.88956 0.93539 0.97205 0.91751 1.20042 0.82170 0.79501 0.88925 1.90650 1.56673 1.60893 1.32995 1.46191 1.18630 1.52645 1.17715 1.19480 0.94876 0.91678 0.83882 1.21079 1.01208 1.34253 1.01510 0.90272 1.24789 0.94567 0.94505 0.98712 1.69883 1.13713 1.34649 1.34702 0.86828 0.79406 0.79687 0.83852 1.19841 1.20887 1.18500 1.19368 0.97234 0.93508 0.97660 1.21109 0.99166 0.92411 0.97212 1.21164 0.97619 0.96345 0.99354 1.21156 0.96806 0.99450 0.96241 1.21048 1.00106 0.93346 0.99562 1.21049 0.96404 0.96484 0.98748 1.22252 0.94336 0.89051 1.01787 1.22126 0.94444 0.98302 0.91802 0.91511 0.91416 0.95623 0.93878 0.90443 0.89840 0.94039 0.77175 0.95734 0.96175 0.92268 0.84987 0.86198 0.86329 0.86033 0.85968 0.94112 0.88965 0.93626 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.60 60.06 0.58 0.80 16 2 N -0.55 -6.02 4.97 -242.76 -1.21 -7.22 16 3 C 0.06 0.63 5.62 -3.76 -0.02 0.60 16 4 C 0.06 0.66 5.27 -3.76 -0.02 0.64 16 5 N -0.51 -7.14 3.79 -229.28 -0.87 -8.01 16 6 C 0.11 1.63 2.06 -70.02 -0.14 1.49 16 7 H 0.06 0.87 7.95 -51.93 -0.41 0.46 16 8 C 0.51 9.79 5.86 -10.98 -0.06 9.73 16 9 O -0.53 -12.01 15.51 5.56 0.09 -11.93 16 10 N -0.70 -14.39 5.55 -61.47 -0.34 -14.73 16 11 C 0.22 5.49 4.50 -5.19 -0.02 5.47 16 12 C -0.54 -14.89 9.83 -34.44 -0.34 -15.23 16 13 H 0.08 2.26 7.84 -52.49 -0.41 1.85 16 14 C 0.08 2.21 5.47 -17.82 -0.10 2.11 16 15 N -0.89 -26.50 13.96 55.43 0.77 -25.73 16 16 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 17 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.26 -6.39 6.54 56.52 0.37 -6.02 16 20 C -0.08 -1.07 3.55 -104.62 -0.37 -1.44 16 21 C -0.08 -1.12 8.48 -39.58 -0.34 -1.46 16 22 C -0.13 -1.52 10.05 -39.58 -0.40 -1.91 16 23 C -0.12 -1.30 10.05 -39.58 -0.40 -1.70 16 24 C -0.12 -1.38 10.05 -39.58 -0.40 -1.77 16 25 C -0.11 -1.34 9.67 -39.58 -0.38 -1.72 16 26 C 0.05 0.75 5.27 -3.77 -0.02 0.73 16 27 C 0.06 0.74 5.62 -3.77 -0.02 0.72 16 28 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 29 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 30 H 0.03 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 0.94 6.36 -51.93 -0.33 0.61 16 34 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.39 7.24 8.32 -40.82 -0.34 6.90 16 36 H 0.02 0.65 7.20 -51.93 -0.37 0.27 16 37 H 0.02 0.52 7.57 -51.93 -0.39 0.12 16 38 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 39 H 0.13 2.00 7.89 -52.49 -0.41 1.59 16 40 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 41 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.12 1.32 8.00 -52.48 -0.42 0.90 16 44 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.09 1.53 6.25 -51.93 -0.32 1.20 16 46 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 LS Contribution 376.06 15.07 5.67 5.67 Total: -1.00 -31.83 376.06 -10.67 -42.50 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.66 Total: 5.54 kcal Atomic # 6 Polarization: -0.48 SS G_CDS: -2.46 Total: -2.93 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -1.64 Total: -55.68 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.09 Total: -11.93 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.83 -10.67 -42.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.024 kcal (2) G-P(sol) polarization free energy of solvation -31.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds