Wall clock time and date at job start Tue Mar 31 2020 11:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46956 * 110.99692 * 2 1 4 4 C 1.53058 * 109.36694 * 183.18812 * 3 2 1 5 5 N 1.46956 * 109.35953 * 301.60067 * 4 3 2 6 6 C 1.46897 * 110.99803 * 183.18737 * 5 4 3 7 7 H 1.09000 * 109.47067 * 297.02652 * 6 5 4 8 8 C 1.50698 * 109.47123 * 177.03107 * 6 5 4 9 9 O 1.21282 * 120.00343 * 332.18451 * 8 6 5 10 10 N 1.34783 * 120.00110 * 151.91506 * 8 6 5 11 11 C 1.46499 * 120.00000 * 179.97438 * 10 8 6 12 12 C 1.50699 * 109.46974 * 179.97438 * 11 10 8 13 13 H 1.07997 * 119.99868 * 0.02562 * 12 11 10 14 14 C 1.37878 * 119.99899 * 180.02562 * 12 11 10 15 15 N 1.31520 * 119.99928 * 180.02562 * 14 12 11 16 16 Si 1.86798 * 120.00117 * 359.97438 * 14 12 11 17 17 H 1.48497 * 109.46927 * 90.00102 * 16 14 12 18 18 H 1.48494 * 109.47359 * 209.99885 * 16 14 12 19 19 H 1.48501 * 109.47070 * 330.00106 * 16 14 12 20 20 C 1.50700 * 109.47278 * 57.03280 * 6 5 4 21 21 C 1.38234 * 120.00245 * 45.42316 * 20 6 5 22 22 C 1.38233 * 120.00193 * 179.76735 * 21 20 6 23 23 C 1.38239 * 119.99771 * 0.50914 * 22 21 20 24 24 C 1.38237 * 120.00060 * 359.75125 * 23 22 21 25 25 C 1.38229 * 119.99958 * 359.97438 * 24 23 22 26 26 C 1.46956 * 110.88320 * 59.31895 * 5 4 3 27 27 C 1.46957 * 111.00199 * 123.79554 * 2 1 3 28 28 H 1.09009 * 109.46964 * 60.00382 * 1 2 3 29 29 H 1.09000 * 109.46814 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47703 * 299.99994 * 1 2 3 31 31 H 1.08994 * 109.49349 * 63.21758 * 3 2 1 32 32 H 1.09004 * 109.50993 * 303.16089 * 3 2 1 33 33 H 1.08993 * 109.48958 * 181.63448 * 4 3 2 34 34 H 1.09003 * 109.50664 * 61.57026 * 4 3 2 35 35 H 0.96998 * 119.99949 * 0.02562 * 10 8 6 36 36 H 1.08998 * 109.47534 * 300.00067 * 11 10 8 37 37 H 1.08999 * 109.46906 * 60.00387 * 11 10 8 38 38 H 0.97001 * 119.99659 * 180.02562 * 15 14 12 39 39 H 1.07997 * 119.99738 * 0.02562 * 21 20 6 40 40 H 1.07993 * 120.00245 * 180.23352 * 22 21 20 41 41 H 1.07997 * 120.00018 * 179.72267 * 23 22 21 42 42 H 1.07997 * 119.99942 * 179.97438 * 24 23 22 43 43 H 1.08005 * 120.00073 * 179.97438 * 25 24 23 44 44 H 1.08996 * 109.49058 * 60.64277 * 26 5 4 45 45 H 1.08999 * 109.49110 * 180.71489 * 26 5 4 46 46 H 1.08996 * 109.48786 * 296.78603 * 27 2 1 47 47 H 1.08998 * 109.48403 * 56.84691 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3720 0.0000 4 6 3.5234 1.3292 -0.0803 5 7 4.0500 0.5660 1.0598 6 6 5.5190 0.5661 1.0599 7 1 5.8824 0.0652 0.1626 8 6 6.0213 -0.1621 2.2799 9 8 5.3476 -0.1930 3.2879 10 7 7.2169 -0.7836 2.2491 11 6 7.7054 -1.4910 3.4353 12 6 9.0544 -2.0944 3.1402 13 1 9.5031 -1.9637 2.1666 14 6 9.7157 -2.8135 4.1132 15 7 10.8932 -3.3397 3.8558 16 14 8.9399 -3.0389 5.7975 17 1 8.1120 -4.2716 5.8000 18 1 10.0078 -3.1578 6.8224 19 1 8.0833 -1.8665 6.1088 20 6 6.0213 1.9868 1.0805 21 6 5.4594 2.9060 1.9467 22 6 5.9235 4.2080 1.9691 23 6 6.9422 4.5933 1.1178 24 6 7.5004 3.6754 0.2478 25 6 7.0402 2.3721 0.2295 26 6 3.5234 -0.8059 1.0598 27 6 1.9957 -0.7631 1.1401 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.6936 1.8774 0.9172 32 1 1.6013 1.9132 -0.8601 33 1 3.9176 2.3450 -0.0512 34 1 3.8257 0.8482 -1.0106 35 1 7.7541 -0.7618 1.4418 36 1 7.7943 -0.7902 4.2655 37 1 7.0042 -2.2820 3.7011 38 1 11.3583 -3.8459 4.5402 39 1 4.6608 2.6059 2.6089 40 1 5.4871 4.9251 2.6484 41 1 7.3017 5.6116 1.1321 42 1 8.2960 3.9766 -0.4175 43 1 7.4760 1.6551 -0.4505 44 1 3.8253 -1.3113 0.1425 45 1 3.9177 -1.3468 1.9201 46 1 1.6937 -0.2820 2.0704 47 1 1.6013 -1.7789 1.1110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427647996.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:59 Heat of formation + Delta-G solvation = -12.234475 kcal Electronic energy + Delta-G solvation = -27268.572353 eV Core-core repulsion = 23643.414858 eV Total energy + Delta-G solvation = -3625.157496 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.64515 -39.73294 -39.61755 -36.58590 -36.05727 -34.44155 -32.92930 -31.99483 -31.70500 -30.26707 -29.35385 -26.91168 -24.83765 -24.44417 -23.89389 -23.44230 -22.42721 -21.32261 -20.73901 -19.19580 -18.00767 -17.81519 -17.58647 -16.80062 -16.57153 -16.09335 -16.05233 -15.91656 -15.77055 -15.58827 -15.48346 -15.04893 -14.78614 -14.52619 -14.31740 -14.16867 -14.09397 -13.73609 -13.37063 -13.31240 -13.09154 -12.92574 -12.72064 -12.70893 -12.29500 -12.16998 -11.98329 -11.95681 -11.85105 -11.68842 -11.67603 -10.93159 -10.90919 -9.96491 -9.79070 -9.62023 -9.48692 -9.30692 -8.41391 -6.48260 0.35266 0.53360 1.30653 1.33075 1.45609 1.65944 2.18231 2.26717 2.73147 2.93771 2.94193 3.07746 3.61391 3.81160 3.88302 3.91314 4.04264 4.16554 4.20250 4.21748 4.29141 4.34430 4.37480 4.52027 4.60452 4.63718 4.67596 4.73331 4.75449 4.79879 4.84200 4.94746 4.99305 4.99692 5.01504 5.05651 5.19216 5.23295 5.47336 5.56192 5.59331 5.64207 5.81498 5.89482 6.06207 6.07861 6.10567 6.12613 6.51832 6.79778 7.13877 7.35302 8.73328 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011042 B = 0.004243 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.181158 B = 6597.539996 C = 8400.267355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.062 3.938 4 C 0.063 3.937 5 N -0.522 5.522 6 C 0.123 3.877 7 H 0.080 0.920 8 C 0.512 3.488 9 O -0.570 6.570 10 N -0.704 5.704 11 C 0.237 3.763 12 C -0.545 4.545 13 H 0.059 0.941 14 C 0.029 3.971 15 N -0.929 5.929 16 Si 0.935 3.065 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.263 1.263 20 C -0.093 4.093 21 C -0.098 4.098 22 C -0.132 4.132 23 C -0.115 4.115 24 C -0.123 4.123 25 C -0.115 4.115 26 C 0.056 3.944 27 C 0.068 3.932 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.025 0.975 31 H 0.034 0.966 32 H 0.101 0.899 33 H 0.087 0.913 34 H 0.044 0.956 35 H 0.405 0.595 36 H 0.009 0.991 37 H 0.012 0.988 38 H 0.273 0.727 39 H 0.110 0.890 40 H 0.137 0.863 41 H 0.148 0.852 42 H 0.148 0.852 43 H 0.136 0.864 44 H 0.044 0.956 45 H 0.060 0.940 46 H 0.030 0.970 47 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.793 14.406 -11.472 24.923 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.066 4.066 4 C -0.064 4.064 5 N -0.248 5.248 6 C 0.011 3.989 7 H 0.097 0.903 8 C 0.298 3.702 9 O -0.449 6.449 10 N -0.354 5.354 11 C 0.113 3.887 12 C -0.583 4.583 13 H 0.078 0.922 14 C -0.172 4.172 15 N -0.568 5.568 16 Si 0.759 3.241 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.188 1.188 20 C -0.094 4.094 21 C -0.116 4.116 22 C -0.149 4.149 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.134 4.134 26 C -0.072 4.072 27 C -0.060 4.060 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.043 0.957 31 H 0.052 0.948 32 H 0.119 0.881 33 H 0.105 0.895 34 H 0.063 0.937 35 H 0.241 0.759 36 H 0.027 0.973 37 H 0.030 0.970 38 H 0.082 0.918 39 H 0.128 0.872 40 H 0.155 0.845 41 H 0.165 0.835 42 H 0.166 0.834 43 H 0.154 0.846 44 H 0.062 0.938 45 H 0.079 0.921 46 H 0.049 0.951 47 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -17.124 14.246 -10.670 24.699 hybrid contribution 0.412 -0.655 0.785 1.102 sum -16.712 13.591 -9.886 23.701 Atomic orbital electron populations 1.22395 0.85704 1.02799 1.01265 1.62224 1.09211 1.14089 1.42263 1.22170 0.93644 0.89277 1.01507 1.22207 0.94878 0.98718 0.90642 1.61848 1.04158 1.14627 1.44142 1.20327 0.89672 0.93937 0.94957 0.90281 1.20796 0.81000 0.78479 0.89956 1.90623 1.57451 1.61944 1.34899 1.46044 1.19534 1.52841 1.16964 1.19061 0.93391 0.91191 0.85056 1.21254 1.02186 1.34115 1.00762 0.92249 1.25565 0.94979 0.94295 1.02346 1.69979 1.15024 1.35647 1.36168 0.85891 0.78808 0.79689 0.79716 1.18852 1.19689 1.18756 1.19337 0.98440 0.92659 0.98950 1.21040 0.99405 0.93639 0.97540 1.21402 0.97899 0.95777 0.99861 1.21529 0.95813 1.00825 0.95147 1.21418 1.00303 0.92751 0.99641 1.21283 0.95834 0.97599 0.98653 1.22159 0.95683 0.89004 1.00379 1.22020 0.93114 0.99111 0.91772 0.89871 0.90715 0.95681 0.94805 0.88087 0.89473 0.93726 0.75944 0.97310 0.97028 0.91814 0.87162 0.84511 0.83463 0.83442 0.84582 0.93822 0.92126 0.95125 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.60 127.69 1.23 1.63 16 2 N -0.55 -11.35 4.97 -921.95 -4.58 -15.93 16 3 C 0.06 1.21 5.62 86.31 0.49 1.69 16 4 C 0.06 1.38 5.27 86.31 0.45 1.84 16 5 N -0.52 -14.61 3.79 -879.31 -3.34 -17.95 16 6 C 0.12 3.64 2.06 43.42 0.09 3.73 16 7 H 0.08 2.08 7.95 -2.39 -0.02 2.06 16 8 C 0.51 20.07 5.86 87.66 0.51 20.58 16 9 O -0.57 -26.48 15.51 -3.04 -0.05 -26.53 16 10 N -0.70 -29.31 5.55 -466.79 -2.59 -31.90 16 11 C 0.24 11.87 4.50 85.63 0.38 12.26 16 12 C -0.55 -30.44 9.83 25.60 0.25 -30.19 16 13 H 0.06 3.47 7.84 -2.91 -0.02 3.45 16 14 C 0.03 1.63 5.47 84.65 0.46 2.10 16 15 N -0.93 -55.71 13.96 21.45 0.30 -55.42 16 16 Si 0.94 44.57 27.47 68.60 1.88 46.46 16 17 H -0.26 -12.11 7.11 99.48 0.71 -11.41 16 18 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 19 H -0.26 -12.56 6.54 99.48 0.65 -11.91 16 20 C -0.09 -2.52 3.55 -19.86 -0.07 -2.59 16 21 C -0.10 -2.69 8.48 22.27 0.19 -2.51 16 22 C -0.13 -2.93 10.05 22.27 0.22 -2.71 16 23 C -0.12 -2.20 10.05 22.27 0.22 -1.98 16 24 C -0.12 -2.41 10.05 22.27 0.22 -2.19 16 25 C -0.12 -2.64 9.67 22.27 0.22 -2.42 16 26 C 0.06 1.59 5.27 86.31 0.46 2.05 16 27 C 0.07 1.64 5.62 86.31 0.49 2.12 16 28 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 29 H 0.07 1.04 8.13 -2.39 -0.02 1.02 16 30 H 0.02 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.03 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 33 H 0.09 1.86 6.36 -2.39 -0.02 1.85 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.41 15.01 8.32 -92.71 -0.77 14.24 16 36 H 0.01 0.48 7.20 -2.39 -0.02 0.46 16 37 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16 38 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 39 H 0.11 3.47 7.89 -2.91 -0.02 3.44 16 40 H 0.14 2.48 8.06 -2.91 -0.02 2.46 16 41 H 0.15 1.95 8.06 -2.91 -0.02 1.93 16 42 H 0.15 2.10 8.06 -2.91 -0.02 2.07 16 43 H 0.14 2.65 8.00 -2.91 -0.02 2.62 16 44 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 45 H 0.06 2.10 6.25 -2.39 -0.01 2.09 16 46 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 47 H 0.09 1.92 8.13 -2.39 -0.02 1.90 16 Total: -1.00 -69.32 376.06 -2.43 -71.75 By element: Atomic # 1 Polarization: 25.99 SS G_CDS: 0.12 Total: 26.11 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 5.81 Total: 3.40 kcal Atomic # 7 Polarization: -110.99 SS G_CDS: -10.21 Total: -121.20 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.05 Total: -26.53 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.46 kcal Total: -69.32 -2.43 -71.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647996.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.519 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds