Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46959 * 110.99563 * 2 1 4 4 C 1.53052 * 109.36232 * 183.19075 * 3 2 1 5 5 N 1.46963 * 109.36252 * 301.59852 * 4 3 2 6 6 C 1.46900 * 110.99764 * 183.19225 * 5 4 3 7 7 H 1.09005 * 109.47204 * 299.99345 * 6 5 4 8 8 C 1.50696 * 109.47556 * 59.99547 * 6 5 4 9 9 O 1.21278 * 120.00086 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00085 * 179.97438 * 8 6 5 11 11 C 1.46502 * 119.99879 * 180.02562 * 10 8 6 12 12 C 1.50705 * 109.46932 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99689 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99849 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99735 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47476 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47092 * 120.00186 * 16 14 12 19 19 H 1.48504 * 109.46993 * 239.99756 * 16 14 12 20 20 C 1.50703 * 109.47042 * 180.02562 * 6 5 4 21 21 C 1.38234 * 120.00257 * 139.99953 * 20 6 5 22 22 C 1.38238 * 119.99675 * 180.27927 * 21 20 6 23 23 C 1.38228 * 120.00120 * 359.47825 * 22 21 20 24 24 C 1.38234 * 120.00000 * 0.52176 * 23 22 21 25 25 C 1.38234 * 119.99503 * 320.01553 * 20 6 5 26 26 C 1.46955 * 110.87918 * 59.32139 * 5 4 3 27 27 C 1.46955 * 110.99982 * 123.79833 * 2 1 3 28 28 H 1.08998 * 109.47581 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47233 * 299.99879 * 1 2 3 31 31 H 1.08998 * 109.49029 * 63.22581 * 3 2 1 32 32 H 1.08999 * 109.50429 * 303.16207 * 3 2 1 33 33 H 1.08996 * 109.49000 * 181.62801 * 4 3 2 34 34 H 1.09000 * 109.49368 * 61.56183 * 4 3 2 35 35 H 0.97003 * 120.00138 * 0.02562 * 10 8 6 36 36 H 1.08998 * 109.47059 * 300.00143 * 11 10 8 37 37 H 1.08994 * 109.47252 * 60.00434 * 11 10 8 38 38 H 0.97001 * 119.99572 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.99744 * 359.97438 * 21 20 6 40 40 H 1.08004 * 119.99577 * 179.72816 * 22 21 20 41 41 H 1.07999 * 119.99932 * 180.24104 * 23 22 21 42 42 H 1.08001 * 120.00310 * 179.72161 * 24 23 22 43 43 H 1.07997 * 120.00460 * 0.02562 * 25 20 6 44 44 H 1.08999 * 109.49212 * 60.64884 * 26 5 4 45 45 H 1.09010 * 109.48478 * 180.71338 * 26 5 4 46 46 H 1.09002 * 109.49068 * 296.77555 * 27 2 1 47 47 H 1.09000 * 109.48889 * 56.82366 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5660 1.0598 6 6 5.5190 0.5661 1.0597 7 1 5.8824 0.1123 0.1377 8 6 6.0213 1.9838 1.1538 9 8 5.2332 2.9035 1.2153 10 7 7.3464 2.2295 1.1706 11 6 7.8347 3.6077 1.2626 12 6 9.3417 3.6078 1.2625 13 1 9.8817 2.6745 1.2005 14 6 10.0311 4.7991 1.3426 15 7 9.3734 5.9355 1.4196 16 14 11.8990 4.7991 1.3431 17 1 12.3941 3.4022 1.2502 18 1 12.3943 5.5787 0.1804 19 1 12.3937 5.4166 2.5999 20 6 6.0215 -0.2248 2.2401 21 6 7.1165 -1.0566 2.0991 22 6 7.5737 -1.7864 3.1805 23 6 6.9426 -1.6763 4.4053 24 6 5.8475 -0.8445 4.5462 25 6 5.3869 -0.1187 3.4636 26 6 3.5234 -0.8060 1.0597 27 6 1.9956 -0.7632 1.1401 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6937 1.8774 0.9174 32 1 1.6012 1.9132 -0.8601 33 1 3.9176 2.3449 -0.0514 34 1 3.8253 0.8480 -1.0106 35 1 7.9768 1.4939 1.1218 36 1 7.4716 4.1796 0.4087 37 1 7.4711 4.0612 2.1847 38 1 9.8584 6.7737 1.4755 39 1 7.6118 -1.1399 1.1430 40 1 8.4266 -2.4396 3.0692 41 1 7.3022 -2.2435 5.2510 42 1 5.3516 -0.7619 5.5020 43 1 4.5310 0.5306 3.5736 44 1 3.8253 -1.3114 0.1424 45 1 3.9178 -1.3469 1.9201 46 1 1.6938 -0.2820 2.0704 47 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427647997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = 10.674914 kcal Electronic energy + Delta-G solvation = -27289.466403 eV Core-core repulsion = 23665.302333 eV Total energy + Delta-G solvation = -3624.164070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.39103 -38.63610 -38.22786 -35.37732 -34.16886 -32.51924 -31.63616 -30.97526 -30.67163 -28.61938 -27.46901 -25.62528 -23.67965 -23.34353 -22.57502 -22.41578 -21.23768 -19.78087 -19.50565 -17.31220 -16.80748 -16.33778 -15.75733 -15.51332 -15.16044 -15.07313 -14.88212 -14.73337 -14.41632 -14.37278 -14.08119 -13.78922 -13.46093 -13.23011 -12.92864 -12.75378 -12.45759 -12.32096 -12.05708 -11.92879 -11.81360 -11.65918 -11.21841 -11.16928 -11.02552 -10.95985 -10.93133 -10.68276 -10.62305 -10.29354 -9.37598 -9.26940 -8.81919 -8.73052 -8.54470 -8.41494 -8.15692 -7.84835 -6.16475 -4.22945 1.36621 1.49926 3.23501 3.28805 3.30746 3.33728 3.64919 3.81245 3.86993 4.28570 4.45233 4.74806 4.85567 4.95081 4.97888 5.06136 5.15693 5.19910 5.21830 5.27347 5.32815 5.35943 5.48385 5.50722 5.52534 5.58376 5.64329 5.69080 5.70691 5.78515 5.90329 5.99617 6.08466 6.14118 6.26693 6.50240 6.59208 6.63223 6.87044 6.90675 7.04669 7.11044 7.20485 7.32597 7.44696 7.52045 7.67580 7.97145 8.62283 8.78310 9.08978 9.43546 10.93763 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.003884 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.324318 B = 7206.960654 C = 8873.143902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.548 5.548 3 C 0.062 3.938 4 C 0.044 3.956 5 N -0.512 5.512 6 C 0.107 3.893 7 H 0.068 0.932 8 C 0.510 3.490 9 O -0.536 6.536 10 N -0.706 5.706 11 C 0.252 3.748 12 C -0.541 4.541 13 H 0.063 0.937 14 C 0.064 3.936 15 N -0.885 5.885 16 Si 0.902 3.098 17 H -0.272 1.272 18 H -0.282 1.282 19 H -0.282 1.282 20 C -0.076 4.076 21 C -0.112 4.112 22 C -0.120 4.120 23 C -0.119 4.119 24 C -0.124 4.124 25 C -0.085 4.085 26 C 0.055 3.945 27 C 0.060 3.940 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.025 0.975 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.117 0.883 34 H 0.033 0.967 35 H 0.389 0.611 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.265 0.735 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.120 0.880 43 H 0.131 0.869 44 H 0.039 0.961 45 H 0.083 0.917 46 H 0.042 0.958 47 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.885 -17.440 0.830 21.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.273 5.273 3 C -0.066 4.066 4 C -0.084 4.084 5 N -0.237 5.237 6 C -0.005 4.005 7 H 0.086 0.914 8 C 0.293 3.707 9 O -0.414 6.414 10 N -0.354 5.354 11 C 0.131 3.869 12 C -0.579 4.579 13 H 0.081 0.919 14 C -0.140 4.140 15 N -0.523 5.523 16 Si 0.730 3.270 17 H -0.196 1.196 18 H -0.208 1.208 19 H -0.208 1.208 20 C -0.077 4.077 21 C -0.131 4.131 22 C -0.138 4.138 23 C -0.137 4.137 24 C -0.142 4.142 25 C -0.103 4.103 26 C -0.073 4.073 27 C -0.068 4.068 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.043 0.957 31 H 0.063 0.937 32 H 0.096 0.904 33 H 0.135 0.865 34 H 0.051 0.949 35 H 0.222 0.778 36 H 0.045 0.955 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.136 0.864 42 H 0.138 0.862 43 H 0.149 0.851 44 H 0.057 0.943 45 H 0.101 0.899 46 H 0.060 0.940 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.412 -16.526 0.877 20.686 hybrid contribution 1.374 -0.255 0.016 1.398 sum -11.037 -16.780 0.893 20.105 Atomic orbital electron populations 1.22324 0.87541 1.01715 1.00665 1.62217 1.07566 1.14706 1.42820 1.22143 0.94839 0.88508 1.01124 1.22567 0.93944 1.01570 0.90279 1.61833 1.04636 1.13112 1.44124 1.20498 0.89163 0.94479 0.96375 0.91406 1.19973 0.83455 0.89332 0.77904 1.90572 1.54984 1.45585 1.50260 1.46418 1.05290 1.12031 1.71705 1.19107 0.93873 0.76276 0.97628 1.21251 0.90665 0.93292 1.52736 0.91913 1.24940 0.99089 0.95222 0.94722 1.69985 1.35767 0.97702 1.48819 0.86378 0.84679 0.78218 0.77754 1.19621 1.20797 1.20799 1.19446 0.96395 0.97285 0.94533 1.21027 0.96185 0.96546 0.99308 1.21040 0.99923 0.99860 0.92968 1.21138 0.96184 0.99045 0.97366 1.21157 0.97151 0.97302 0.98620 1.21084 0.99618 0.97986 0.91627 1.22224 0.94159 0.89724 1.01211 1.22122 0.94521 0.98081 0.92075 0.91449 0.91648 0.95664 0.93712 0.90434 0.86549 0.94857 0.77808 0.95514 0.95493 0.92525 0.86014 0.86078 0.86361 0.86211 0.85128 0.94261 0.89908 0.93975 0.90603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 9.60 60.06 0.58 0.82 16 2 N -0.55 -6.40 4.97 -242.76 -1.21 -7.60 16 3 C 0.06 0.80 5.62 -3.77 -0.02 0.78 16 4 C 0.04 0.66 5.21 -3.76 -0.02 0.64 16 5 N -0.51 -7.51 3.72 -229.27 -0.85 -8.37 16 6 C 0.11 1.64 2.09 -70.02 -0.15 1.50 16 7 H 0.07 0.97 8.00 -51.93 -0.42 0.55 16 8 C 0.51 10.23 6.84 -10.99 -0.08 10.15 16 9 O -0.54 -12.51 13.83 5.56 0.08 -12.43 16 10 N -0.71 -15.06 5.45 -61.47 -0.33 -15.39 16 11 C 0.25 6.67 5.43 -5.19 -0.03 6.64 16 12 C -0.54 -14.72 9.28 -34.44 -0.32 -15.04 16 13 H 0.06 1.61 7.60 -52.49 -0.40 1.21 16 14 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 15 N -0.89 -26.07 13.29 55.43 0.74 -25.34 16 16 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 17 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 18 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 19 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 20 C -0.08 -1.07 3.52 -104.62 -0.37 -1.43 16 21 C -0.11 -1.40 9.51 -39.58 -0.38 -1.77 16 22 C -0.12 -1.36 10.05 -39.58 -0.40 -1.76 16 23 C -0.12 -1.34 10.05 -39.59 -0.40 -1.74 16 24 C -0.12 -1.51 10.05 -39.58 -0.40 -1.90 16 25 C -0.08 -1.19 8.11 -39.58 -0.32 -1.51 16 26 C 0.05 0.67 5.20 -3.77 -0.02 0.65 16 27 C 0.06 0.67 5.62 -3.77 -0.02 0.65 16 28 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 30 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.04 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 2.10 5.29 -51.93 -0.27 1.82 16 34 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.39 7.37 8.05 -40.82 -0.33 7.05 16 36 H 0.03 0.78 8.14 -51.93 -0.42 0.35 16 37 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 39 H 0.12 1.32 8.04 -52.49 -0.42 0.90 16 40 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 41 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 42 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 43 H 0.13 1.96 7.72 -52.49 -0.41 1.55 16 44 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.08 0.97 6.05 -51.92 -0.31 0.66 16 46 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 47 H 0.08 0.71 8.13 -51.93 -0.42 0.29 16 LS Contribution 376.48 15.07 5.67 5.67 Total: -1.00 -31.35 376.48 -10.97 -42.32 By element: Atomic # 1 Polarization: 14.51 SS G_CDS: -7.61 Total: 6.90 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: -2.43 Total: -1.65 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -1.66 Total: -56.70 kcal Atomic # 8 Polarization: -12.51 SS G_CDS: 0.08 Total: -12.43 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.35 -10.97 -42.32 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.990 kcal (2) G-P(sol) polarization free energy of solvation -31.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds