Wall clock time and date at job start Tue Mar 31 2020 11:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46959 * 110.99563 * 2 1 4 4 C 1.53052 * 109.36232 * 183.19075 * 3 2 1 5 5 N 1.46963 * 109.36252 * 301.59852 * 4 3 2 6 6 C 1.46900 * 110.99764 * 183.19225 * 5 4 3 7 7 H 1.09005 * 109.47204 * 299.99345 * 6 5 4 8 8 C 1.50696 * 109.47556 * 59.99547 * 6 5 4 9 9 O 1.21278 * 120.00086 * 0.02562 * 8 6 5 10 10 N 1.34778 * 120.00085 * 179.97438 * 8 6 5 11 11 C 1.46502 * 119.99879 * 180.02562 * 10 8 6 12 12 C 1.50705 * 109.46932 * 180.02562 * 11 10 8 13 13 H 1.08001 * 119.99689 * 359.97438 * 12 11 10 14 14 C 1.37876 * 119.99849 * 180.02562 * 12 11 10 15 15 N 1.31517 * 119.99924 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 119.99735 * 179.97438 * 14 12 11 17 17 H 1.48498 * 109.47476 * 359.97438 * 16 14 12 18 18 H 1.48492 * 109.47092 * 120.00186 * 16 14 12 19 19 H 1.48504 * 109.46993 * 239.99756 * 16 14 12 20 20 C 1.50703 * 109.47042 * 180.02562 * 6 5 4 21 21 C 1.38234 * 120.00257 * 139.99953 * 20 6 5 22 22 C 1.38238 * 119.99675 * 180.27927 * 21 20 6 23 23 C 1.38228 * 120.00120 * 359.47825 * 22 21 20 24 24 C 1.38234 * 120.00000 * 0.52176 * 23 22 21 25 25 C 1.38234 * 119.99503 * 320.01553 * 20 6 5 26 26 C 1.46955 * 110.87918 * 59.32139 * 5 4 3 27 27 C 1.46955 * 110.99982 * 123.79833 * 2 1 3 28 28 H 1.08998 * 109.47581 * 59.99902 * 1 2 3 29 29 H 1.08998 * 109.47160 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47233 * 299.99879 * 1 2 3 31 31 H 1.08998 * 109.49029 * 63.22581 * 3 2 1 32 32 H 1.08999 * 109.50429 * 303.16207 * 3 2 1 33 33 H 1.08996 * 109.49000 * 181.62801 * 4 3 2 34 34 H 1.09000 * 109.49368 * 61.56183 * 4 3 2 35 35 H 0.97003 * 120.00138 * 0.02562 * 10 8 6 36 36 H 1.08998 * 109.47059 * 300.00143 * 11 10 8 37 37 H 1.08994 * 109.47252 * 60.00434 * 11 10 8 38 38 H 0.97001 * 119.99572 * 180.02562 * 15 14 12 39 39 H 1.08002 * 119.99744 * 359.97438 * 21 20 6 40 40 H 1.08004 * 119.99577 * 179.72816 * 22 21 20 41 41 H 1.07999 * 119.99932 * 180.24104 * 23 22 21 42 42 H 1.08001 * 120.00310 * 179.72161 * 24 23 22 43 43 H 1.07997 * 120.00460 * 0.02562 * 25 20 6 44 44 H 1.08999 * 109.49212 * 60.64884 * 26 5 4 45 45 H 1.09010 * 109.48478 * 180.71338 * 26 5 4 46 46 H 1.09002 * 109.49068 * 296.77555 * 27 2 1 47 47 H 1.09000 * 109.48889 * 56.82366 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9956 1.3720 0.0000 4 6 3.5234 1.3292 -0.0804 5 7 4.0501 0.5660 1.0598 6 6 5.5190 0.5661 1.0597 7 1 5.8824 0.1123 0.1377 8 6 6.0213 1.9838 1.1538 9 8 5.2332 2.9035 1.2153 10 7 7.3464 2.2295 1.1706 11 6 7.8347 3.6077 1.2626 12 6 9.3417 3.6078 1.2625 13 1 9.8817 2.6745 1.2005 14 6 10.0311 4.7991 1.3426 15 7 9.3734 5.9355 1.4196 16 14 11.8990 4.7991 1.3431 17 1 12.3941 3.4022 1.2502 18 1 12.3943 5.5787 0.1804 19 1 12.3937 5.4166 2.5999 20 6 6.0215 -0.2248 2.2401 21 6 7.1165 -1.0566 2.0991 22 6 7.5737 -1.7864 3.1805 23 6 6.9426 -1.6763 4.4053 24 6 5.8475 -0.8445 4.5462 25 6 5.3869 -0.1187 3.4636 26 6 3.5234 -0.8060 1.0597 27 6 1.9956 -0.7632 1.1401 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.6937 1.8774 0.9174 32 1 1.6012 1.9132 -0.8601 33 1 3.9176 2.3449 -0.0514 34 1 3.8253 0.8480 -1.0106 35 1 7.9768 1.4939 1.1218 36 1 7.4716 4.1796 0.4087 37 1 7.4711 4.0612 2.1847 38 1 9.8584 6.7737 1.4755 39 1 7.6118 -1.1399 1.1430 40 1 8.4266 -2.4396 3.0692 41 1 7.3022 -2.2435 5.2510 42 1 5.3516 -0.7619 5.5020 43 1 4.5310 0.5306 3.5736 44 1 3.8253 -1.3114 0.1424 45 1 3.9178 -1.3469 1.9201 46 1 1.6938 -0.2820 2.0704 47 1 1.6010 -1.7788 1.1112 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427647997.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:03 Heat of formation + Delta-G solvation = -11.436029 kcal Electronic energy + Delta-G solvation = -27290.425205 eV Core-core repulsion = 23665.302333 eV Total energy + Delta-G solvation = -3625.122872 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.65940 -39.68082 -39.60100 -36.57584 -36.02365 -34.43454 -32.83578 -31.98476 -31.63976 -29.82975 -29.17480 -26.90102 -24.88368 -24.58674 -24.02898 -23.41618 -22.48816 -21.20569 -20.75294 -19.01395 -17.96255 -17.54511 -17.49746 -16.82915 -16.63553 -16.18576 -16.04688 -15.87767 -15.69915 -15.52099 -15.51036 -15.03241 -14.64381 -14.32005 -14.18780 -14.15462 -13.98322 -13.67108 -13.30855 -13.26279 -12.89255 -12.88698 -12.75429 -12.68995 -12.28220 -12.22895 -12.15988 -11.97543 -11.85189 -11.63857 -11.46285 -10.83060 -10.73479 -9.84920 -9.76655 -9.57380 -9.44663 -9.27978 -8.29708 -6.46104 0.38650 0.54984 1.42417 1.43537 1.57024 1.69116 2.20728 2.42090 2.76316 2.95925 3.05211 3.11606 3.61435 3.84401 3.92161 3.95503 4.07780 4.18168 4.21755 4.24171 4.32067 4.37038 4.38004 4.58777 4.60964 4.65383 4.68427 4.75319 4.83087 4.89582 4.98695 5.00793 5.04584 5.06502 5.09258 5.20711 5.23126 5.47709 5.57887 5.60949 5.66263 5.67203 5.83285 5.88244 5.92241 6.10944 6.13064 6.14625 6.63992 6.87442 7.22458 7.44288 8.82641 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013024 B = 0.003884 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.324318 B = 7206.960654 C = 8873.143902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.553 5.553 3 C 0.069 3.931 4 C 0.047 3.953 5 N -0.524 5.524 6 C 0.122 3.878 7 H 0.084 0.916 8 C 0.507 3.493 9 O -0.574 6.574 10 N -0.702 5.702 11 C 0.271 3.729 12 C -0.554 4.554 13 H 0.082 0.918 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.983 3.017 17 H -0.253 1.253 18 H -0.278 1.278 19 H -0.279 1.279 20 C -0.092 4.092 21 C -0.117 4.117 22 C -0.119 4.119 23 C -0.116 4.116 24 C -0.130 4.130 25 C -0.102 4.102 26 C 0.061 3.939 27 C 0.062 3.938 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.023 0.977 31 H 0.028 0.972 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.036 0.964 35 H 0.404 0.596 36 H -0.010 1.010 37 H -0.015 1.015 38 H 0.269 0.731 39 H 0.138 0.862 40 H 0.149 0.851 41 H 0.147 0.853 42 H 0.136 0.864 43 H 0.109 0.891 44 H 0.042 0.958 45 H 0.089 0.911 46 H 0.032 0.968 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.580 -20.785 1.088 23.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.278 5.278 3 C -0.059 4.059 4 C -0.080 4.080 5 N -0.250 5.250 6 C 0.011 3.989 7 H 0.102 0.898 8 C 0.293 3.707 9 O -0.455 6.455 10 N -0.352 5.352 11 C 0.148 3.852 12 C -0.591 4.591 13 H 0.100 0.900 14 C -0.195 4.195 15 N -0.569 5.569 16 Si 0.806 3.194 17 H -0.176 1.176 18 H -0.203 1.203 19 H -0.205 1.205 20 C -0.093 4.093 21 C -0.135 4.135 22 C -0.137 4.137 23 C -0.134 4.134 24 C -0.147 4.147 25 C -0.121 4.121 26 C -0.066 4.066 27 C -0.066 4.066 28 H 0.093 0.907 29 H 0.102 0.898 30 H 0.042 0.958 31 H 0.046 0.954 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.054 0.946 35 H 0.239 0.761 36 H 0.008 0.992 37 H 0.003 0.997 38 H 0.077 0.923 39 H 0.156 0.844 40 H 0.167 0.833 41 H 0.165 0.835 42 H 0.154 0.846 43 H 0.128 0.872 44 H 0.061 0.939 45 H 0.107 0.893 46 H 0.051 0.949 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -11.127 -19.931 1.132 22.854 hybrid contribution 0.881 0.773 -0.023 1.172 sum -10.246 -19.158 1.109 21.754 Atomic orbital electron populations 1.22397 0.85793 1.03028 1.00967 1.62244 1.09156 1.13390 1.43018 1.22013 0.93452 0.89703 1.00744 1.22391 0.95366 0.99658 0.90630 1.61801 1.04244 1.14895 1.44029 1.20307 0.89757 0.90831 0.98046 0.89837 1.20890 0.82477 0.91313 0.76054 1.90563 1.55835 1.47644 1.51444 1.46140 1.06354 1.10351 1.72340 1.18521 0.94216 0.78485 0.93931 1.21608 0.90708 0.94272 1.52553 0.90040 1.26043 1.04979 0.94601 0.93839 1.70145 1.38297 0.98646 1.49777 0.85134 0.77381 0.79148 0.77720 1.17590 1.20343 1.20480 1.19367 0.97687 0.98406 0.93792 1.21268 0.95442 0.96150 1.00667 1.21416 1.00364 0.99475 0.92447 1.21520 0.95231 0.98281 0.98368 1.21389 0.97655 0.97033 0.98666 1.21030 0.99680 0.98746 0.92620 1.22241 0.94870 0.87952 1.01554 1.22173 0.93740 0.99232 0.91475 0.90727 0.89799 0.95808 0.95400 0.89429 0.90210 0.94582 0.76111 0.99246 0.99704 0.92258 0.84402 0.83298 0.83523 0.84593 0.87242 0.93927 0.89287 0.94918 0.88036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.60 127.69 1.23 1.66 16 2 N -0.55 -12.32 4.97 -921.94 -4.58 -16.89 16 3 C 0.07 1.84 5.62 86.31 0.49 2.32 16 4 C 0.05 1.48 5.21 86.31 0.45 1.93 16 5 N -0.52 -15.74 3.72 -879.26 -3.27 -19.01 16 6 C 0.12 3.81 2.09 43.42 0.09 3.91 16 7 H 0.08 2.33 8.00 -2.38 -0.02 2.31 16 8 C 0.51 21.34 6.84 87.66 0.60 21.94 16 9 O -0.57 -28.90 13.83 -3.02 -0.04 -28.94 16 10 N -0.70 -31.02 5.45 -466.79 -2.54 -33.57 16 11 C 0.27 15.17 5.43 85.63 0.46 15.64 16 12 C -0.55 -30.50 9.28 25.60 0.24 -30.26 16 13 H 0.08 4.09 7.60 -2.91 -0.02 4.07 16 14 C 0.00 0.28 5.46 84.65 0.46 0.74 16 15 N -0.93 -56.47 13.29 21.45 0.28 -56.19 16 16 Si 0.98 42.56 29.54 68.60 2.03 44.59 16 17 H -0.25 -10.08 7.11 99.48 0.71 -9.37 16 18 H -0.28 -11.78 7.11 99.48 0.71 -11.07 16 19 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 20 C -0.09 -2.52 3.52 -19.87 -0.07 -2.59 16 21 C -0.12 -2.64 9.51 22.27 0.21 -2.43 16 22 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 23 C -0.12 -2.23 10.05 22.27 0.22 -2.01 16 24 C -0.13 -2.93 10.05 22.27 0.22 -2.70 16 25 C -0.10 -2.85 8.11 22.27 0.18 -2.66 16 26 C 0.06 1.43 5.20 86.31 0.45 1.88 16 27 C 0.06 1.29 5.62 86.31 0.49 1.78 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.08 1.11 8.13 -2.39 -0.02 1.09 16 30 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 33 H 0.08 3.12 5.29 -2.39 -0.01 3.10 16 34 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.40 15.28 8.05 -92.71 -0.75 14.53 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.95 8.14 -2.39 -0.02 -0.97 16 38 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 39 H 0.14 2.60 8.04 -2.91 -0.02 2.58 16 40 H 0.15 2.04 8.06 -2.91 -0.02 2.02 16 41 H 0.15 1.98 8.06 -2.91 -0.02 1.95 16 42 H 0.14 2.52 8.06 -2.91 -0.02 2.50 16 43 H 0.11 3.44 7.72 -2.91 -0.02 3.42 16 44 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 45 H 0.09 1.98 6.05 -2.38 -0.01 1.97 16 46 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.10 1.62 8.13 -2.39 -0.02 1.60 16 Total: -1.00 -71.55 376.48 -1.97 -73.52 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.21 Total: 29.43 kcal Atomic # 6 Polarization: 1.11 SS G_CDS: 5.94 Total: 7.06 kcal Atomic # 7 Polarization: -115.55 SS G_CDS: -10.10 Total: -125.66 kcal Atomic # 8 Polarization: -28.90 SS G_CDS: -0.04 Total: -28.94 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -71.55 -1.97 -73.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427647997.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.087 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds