Wall clock time and date at job start Tue Mar 31 2020 11:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99666 * 2 1 4 4 C 1.46895 * 111.00233 * 123.95196 * 2 1 3 5 5 C 1.50700 * 109.47179 * 170.00526 * 4 2 1 6 6 C 1.38305 * 119.96414 * 269.97682 * 5 4 2 7 7 C 1.38265 * 120.14084 * 180.02562 * 6 5 4 8 8 C 1.38132 * 120.06751 * 359.68221 * 7 6 5 9 9 C 1.38844 * 119.92979 * 0.62036 * 8 7 6 10 10 N 1.39952 * 120.07388 * 179.67619 * 9 8 7 11 11 C 1.34780 * 119.99496 * 324.43821 * 10 9 8 12 12 O 1.21586 * 120.00127 * 4.76584 * 11 10 9 13 13 N 1.34770 * 119.99742 * 184.76296 * 11 10 9 14 14 C 1.46503 * 119.99844 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46884 * 184.76249 * 14 13 11 16 16 C 1.50694 * 115.55418 * 304.08766 * 15 14 13 17 17 H 1.07998 * 120.00411 * 95.19835 * 16 15 14 18 18 C 1.37878 * 119.99763 * 274.92677 * 16 15 14 19 19 N 1.31512 * 120.00442 * 355.50943 * 18 16 15 20 20 Si 1.86809 * 119.99771 * 175.50922 * 18 16 15 21 21 H 1.48501 * 109.47212 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47057 * 120.00313 * 20 18 16 23 23 H 1.48507 * 109.46798 * 239.99821 * 20 18 16 24 24 C 1.53006 * 117.49842 * 89.75771 * 15 14 13 25 25 C 1.53010 * 117.49709 * 158.41632 * 15 14 13 26 26 C 1.38087 * 119.96546 * 90.00134 * 5 4 2 27 27 H 1.08994 * 109.47259 * 296.04310 * 1 2 3 28 28 H 1.08996 * 109.46943 * 56.04818 * 1 2 3 29 29 H 1.09003 * 109.46318 * 176.04620 * 1 2 3 30 30 H 1.08998 * 109.47306 * 183.95176 * 3 2 1 31 31 H 1.08997 * 109.46929 * 303.95717 * 3 2 1 32 32 H 1.09000 * 109.46686 * 63.95167 * 3 2 1 33 33 H 1.08997 * 109.47171 * 50.00418 * 4 2 1 34 34 H 1.08997 * 109.47215 * 290.00249 * 4 2 1 35 35 H 1.08001 * 119.93259 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.96318 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03899 * 180.29330 * 8 7 6 38 38 H 0.96991 * 120.00074 * 144.43578 * 10 9 8 39 39 H 0.97000 * 120.00175 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.47375 * 64.76608 * 14 13 11 41 41 H 1.09002 * 109.47103 * 304.76001 * 14 13 11 42 42 H 0.96997 * 120.00117 * 185.00091 * 19 18 16 43 43 H 1.08995 * 117.49916 * 214.99921 * 24 15 14 44 44 H 1.08994 * 117.49842 * 0.02790 * 24 15 14 45 45 H 1.08995 * 117.50036 * 359.97438 * 25 15 14 46 46 H 1.08997 * 117.49233 * 144.97315 * 25 15 14 47 47 H 1.08001 * 120.03700 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4818 -0.9523 0.9729 6 6 3.9690 -2.0584 0.3006 7 6 5.3320 -2.2333 0.1478 8 6 6.2114 -1.2998 0.6609 9 6 5.7257 -0.1915 1.3418 10 7 6.6142 0.7528 1.8687 11 6 7.7986 0.3549 2.3740 12 8 8.1328 -0.8114 2.2940 13 7 8.6126 1.2499 2.9679 14 6 9.9004 0.8176 3.5166 15 6 10.5692 1.9921 4.2336 16 6 10.7693 3.2327 3.4019 17 1 10.0410 4.0294 3.4365 18 6 11.8851 3.3531 2.6009 19 7 12.8179 2.4265 2.6290 20 14 12.0718 4.8325 1.4755 21 1 10.8935 5.7231 1.6292 22 1 13.3055 5.5761 1.8362 23 1 12.1645 4.3737 0.0662 24 6 10.2607 2.1806 5.7203 25 6 11.6342 1.6655 5.2826 26 6 4.3559 -0.0188 1.4937 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3632 -1.0253 -0.0709 30 1 3.0827 1.3434 -0.0708 31 1 1.5897 1.9164 -0.8524 32 1 1.7042 1.8724 0.9233 33 1 1.5091 -1.7406 1.1756 34 1 1.7976 -0.2247 2.0627 35 1 3.2834 -2.7871 -0.1060 36 1 5.7093 -3.0979 -0.3780 37 1 7.2757 -1.4344 0.5371 38 1 6.3775 1.6934 1.8702 39 1 8.3459 2.1803 3.0320 40 1 10.5431 0.4728 2.7067 41 1 9.7392 0.0042 4.2241 42 1 13.6356 2.5459 2.1211 43 1 10.2025 3.2018 6.0967 44 1 9.5816 1.4676 6.1877 45 1 11.8579 0.6140 5.4622 46 1 12.4796 2.3478 5.3707 47 1 3.9749 0.8444 2.0193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429799995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:23 Heat of formation + Delta-G solvation = 29.275719 kcal Electronic energy + Delta-G solvation = -25962.840674 eV Core-core repulsion = 22339.483195 eV Total energy + Delta-G solvation = -3623.357479 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.36748 -38.97986 -37.28857 -36.66435 -34.41365 -33.41006 -32.01488 -31.55280 -29.62579 -27.81524 -26.87608 -26.21689 -25.18596 -22.84962 -22.33016 -21.50837 -21.10621 -19.97807 -19.38182 -17.93888 -17.16318 -16.23303 -15.98290 -15.76187 -15.66063 -15.12331 -14.99827 -14.69413 -14.50971 -14.31928 -14.01425 -13.62825 -13.21965 -12.88417 -12.76953 -12.66823 -12.54221 -12.21337 -12.05444 -11.94096 -11.77456 -11.63404 -11.47639 -11.06144 -11.04505 -10.99371 -10.55993 -10.26623 -10.10754 -9.70614 -9.48092 -9.07420 -8.83937 -8.56122 -8.54139 -8.39858 -8.16401 -7.80773 -6.12282 -4.22760 1.42214 1.45612 3.03306 3.21083 3.30687 3.31431 3.47789 3.74184 4.09481 4.30213 4.61218 4.66749 4.79631 4.91618 5.05215 5.08231 5.15816 5.22083 5.25996 5.32288 5.34210 5.42525 5.50694 5.53500 5.65637 5.72725 5.80463 5.97482 6.03882 6.29897 6.42005 6.46125 6.49753 6.51962 6.64104 6.66984 6.69253 6.72320 6.77570 6.81089 7.09091 7.19737 7.23949 7.30910 7.38512 7.54704 7.76136 8.28971 8.49049 8.79108 9.01980 9.45016 10.94812 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.002666 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.609053 B =10498.874603 C =10990.050943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.542 5.542 3 C 0.019 3.981 4 C 0.096 3.904 5 C -0.066 4.066 6 C -0.122 4.122 7 C -0.103 4.103 8 C -0.118 4.118 9 C 0.177 3.823 10 N -0.694 5.694 11 C 0.696 3.304 12 O -0.587 6.587 13 N -0.711 5.711 14 C 0.181 3.819 15 C 0.023 3.977 16 C -0.501 4.501 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.872 5.872 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.283 1.283 24 C -0.211 4.211 25 C -0.142 4.142 26 C -0.147 4.147 27 H 0.024 0.976 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.076 0.924 31 H 0.066 0.934 32 H 0.025 0.975 33 H 0.083 0.917 34 H 0.042 0.958 35 H 0.119 0.881 36 H 0.123 0.877 37 H 0.142 0.858 38 H 0.404 0.596 39 H 0.400 0.600 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.261 0.739 43 H 0.077 0.923 44 H 0.064 0.936 45 H 0.064 0.936 46 H 0.087 0.913 47 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.851 -3.914 -3.654 21.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.265 5.265 3 C -0.129 4.129 4 C -0.031 4.031 5 C -0.067 4.067 6 C -0.142 4.142 7 C -0.122 4.122 8 C -0.139 4.139 9 C 0.081 3.919 10 N -0.341 5.341 11 C 0.396 3.604 12 O -0.465 6.465 13 N -0.363 5.363 14 C 0.057 3.943 15 C 0.022 3.978 16 C -0.539 4.539 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.508 5.508 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.210 1.210 23 H -0.209 1.209 24 C -0.248 4.248 25 C -0.180 4.180 26 C -0.169 4.169 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.043 0.957 33 H 0.101 0.899 34 H 0.060 0.940 35 H 0.137 0.863 36 H 0.141 0.859 37 H 0.160 0.840 38 H 0.239 0.761 39 H 0.235 0.765 40 H 0.084 0.916 41 H 0.058 0.942 42 H 0.071 0.929 43 H 0.096 0.904 44 H 0.083 0.917 45 H 0.082 0.918 46 H 0.105 0.895 47 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -20.123 -5.237 -4.210 21.216 hybrid contribution -0.164 2.175 0.200 2.191 sum -20.287 -3.062 -4.010 20.905 Atomic orbital electron populations 1.22394 0.87273 1.02262 1.00499 1.61994 1.07507 1.14214 1.42827 1.22488 1.01852 0.88331 1.00214 1.21035 0.91714 0.98768 0.91562 1.19320 0.93959 0.94825 0.98628 1.20876 0.95226 0.97894 1.00182 1.21040 0.92945 0.98827 0.99339 1.21427 1.01638 0.94325 0.96487 1.17475 0.88259 0.91386 0.94733 1.42702 1.17797 1.09739 1.63910 1.16039 0.79885 0.85606 0.78836 1.90871 1.74760 1.16812 1.64078 1.45177 1.20006 1.11021 1.60123 1.20869 0.80994 0.95557 0.96858 1.19047 0.97759 0.94837 0.86139 1.20353 1.07781 1.01205 1.24572 0.92171 1.24995 0.95872 0.95864 0.96288 1.69992 1.06930 1.32970 1.40929 0.86584 0.78127 0.82658 0.80894 1.19723 1.21001 1.20928 1.23048 1.00178 1.00194 1.01409 1.22464 0.92023 0.98814 1.04688 1.20698 0.91370 1.00848 1.03983 0.95712 0.91301 0.91326 0.90556 0.91519 0.95691 0.89897 0.94001 0.86332 0.85940 0.84045 0.76061 0.76545 0.91604 0.94172 0.92861 0.90425 0.91710 0.91759 0.89484 0.86360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.57 60.07 0.57 0.74 16 2 N -0.54 -4.90 5.01 -252.73 -1.27 -6.17 16 3 C 0.02 0.17 9.14 60.07 0.55 0.71 16 4 C 0.10 0.88 5.12 -4.98 -0.03 0.85 16 5 C -0.07 -0.74 4.88 -104.65 -0.51 -1.25 16 6 C -0.12 -1.40 9.70 -39.55 -0.38 -1.78 16 7 C -0.10 -1.31 10.04 -39.61 -0.40 -1.71 16 8 C -0.12 -1.82 8.69 -39.40 -0.34 -2.16 16 9 C 0.18 2.58 6.29 -83.68 -0.53 2.05 16 10 N -0.69 -10.27 5.34 -14.22 -0.08 -10.35 16 11 C 0.70 13.13 8.41 -86.92 -0.73 12.40 16 12 O -0.59 -12.99 13.80 5.29 0.07 -12.91 16 13 N -0.71 -13.64 5.42 -65.23 -0.35 -13.99 16 14 C 0.18 4.02 5.56 -4.04 -0.02 4.00 16 15 C 0.02 0.53 1.60 -155.66 -0.25 0.28 16 16 C -0.50 -12.52 8.14 -34.44 -0.28 -12.80 16 17 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 18 C 0.07 1.93 5.43 -17.82 -0.10 1.83 16 19 N -0.87 -23.79 12.65 55.43 0.70 -23.08 16 20 Si 0.89 20.13 29.54 -169.99 -5.02 15.11 16 21 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 24 C -0.21 -4.35 9.93 -26.69 -0.27 -4.62 16 25 C -0.14 -3.21 9.17 -26.68 -0.24 -3.45 16 26 C -0.15 -1.77 7.88 -39.39 -0.31 -2.08 16 27 H 0.02 0.16 8.14 -51.93 -0.42 -0.26 16 28 H 0.07 0.43 8.12 -51.93 -0.42 0.00 16 29 H 0.07 0.42 8.12 -51.93 -0.42 -0.01 16 30 H 0.08 0.73 6.17 -51.93 -0.32 0.41 16 31 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 32 H 0.02 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.08 0.67 8.01 -51.93 -0.42 0.25 16 34 H 0.04 0.37 8.06 -51.93 -0.42 -0.05 16 35 H 0.12 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.14 2.51 6.25 -52.49 -0.33 2.18 16 38 H 0.40 4.73 8.84 -40.82 -0.36 4.37 16 39 H 0.40 7.01 8.01 -40.82 -0.33 6.68 16 40 H 0.07 1.66 8.14 -51.93 -0.42 1.24 16 41 H 0.04 0.88 8.10 -51.93 -0.42 0.46 16 42 H 0.26 6.86 8.32 -40.82 -0.34 6.52 16 43 H 0.08 1.57 8.14 -51.93 -0.42 1.15 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.09 2.11 8.14 -51.93 -0.42 1.69 16 47 H 0.12 1.22 8.03 -52.49 -0.42 0.80 16 LS Contribution 387.72 15.07 5.84 5.84 Total: -1.00 -29.61 387.72 -10.99 -40.60 By element: Atomic # 1 Polarization: 19.58 SS G_CDS: -7.63 Total: 11.95 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: -3.26 Total: -7.00 kcal Atomic # 7 Polarization: -52.60 SS G_CDS: -0.99 Total: -53.59 kcal Atomic # 8 Polarization: -12.99 SS G_CDS: 0.07 Total: -12.91 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.61 -10.99 -40.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429799995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.874 kcal (2) G-P(sol) polarization free energy of solvation -29.606 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds