Wall clock time and date at job start Tue Mar 31 2020 11:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 110.99666 * 2 1 4 4 C 1.46895 * 111.00233 * 123.95196 * 2 1 3 5 5 C 1.50700 * 109.47179 * 170.00526 * 4 2 1 6 6 C 1.38305 * 119.96414 * 269.97682 * 5 4 2 7 7 C 1.38265 * 120.14084 * 180.02562 * 6 5 4 8 8 C 1.38132 * 120.06751 * 359.68221 * 7 6 5 9 9 C 1.38844 * 119.92979 * 0.62036 * 8 7 6 10 10 N 1.39952 * 120.07388 * 179.67619 * 9 8 7 11 11 C 1.34780 * 119.99496 * 324.43821 * 10 9 8 12 12 O 1.21586 * 120.00127 * 4.76584 * 11 10 9 13 13 N 1.34770 * 119.99742 * 184.76296 * 11 10 9 14 14 C 1.46503 * 119.99844 * 180.02562 * 13 11 10 15 15 C 1.52999 * 109.46884 * 184.76249 * 14 13 11 16 16 C 1.50694 * 115.55418 * 304.08766 * 15 14 13 17 17 H 1.07998 * 120.00411 * 95.19835 * 16 15 14 18 18 C 1.37878 * 119.99763 * 274.92677 * 16 15 14 19 19 N 1.31512 * 120.00442 * 355.50943 * 18 16 15 20 20 Si 1.86809 * 119.99771 * 175.50922 * 18 16 15 21 21 H 1.48501 * 109.47212 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47057 * 120.00313 * 20 18 16 23 23 H 1.48507 * 109.46798 * 239.99821 * 20 18 16 24 24 C 1.53006 * 117.49842 * 89.75771 * 15 14 13 25 25 C 1.53010 * 117.49709 * 158.41632 * 15 14 13 26 26 C 1.38087 * 119.96546 * 90.00134 * 5 4 2 27 27 H 1.08994 * 109.47259 * 296.04310 * 1 2 3 28 28 H 1.08996 * 109.46943 * 56.04818 * 1 2 3 29 29 H 1.09003 * 109.46318 * 176.04620 * 1 2 3 30 30 H 1.08998 * 109.47306 * 183.95176 * 3 2 1 31 31 H 1.08997 * 109.46929 * 303.95717 * 3 2 1 32 32 H 1.09000 * 109.46686 * 63.95167 * 3 2 1 33 33 H 1.08997 * 109.47171 * 50.00418 * 4 2 1 34 34 H 1.08997 * 109.47215 * 290.00249 * 4 2 1 35 35 H 1.08001 * 119.93259 * 0.02562 * 6 5 4 36 36 H 1.07998 * 119.96318 * 180.02562 * 7 6 5 37 37 H 1.07997 * 120.03899 * 180.29330 * 8 7 6 38 38 H 0.96991 * 120.00074 * 144.43578 * 10 9 8 39 39 H 0.97000 * 120.00175 * 0.02562 * 13 11 10 40 40 H 1.08994 * 109.47375 * 64.76608 * 14 13 11 41 41 H 1.09002 * 109.47103 * 304.76001 * 14 13 11 42 42 H 0.96997 * 120.00117 * 185.00091 * 19 18 16 43 43 H 1.08995 * 117.49916 * 214.99921 * 24 15 14 44 44 H 1.08994 * 117.49842 * 0.02790 * 24 15 14 45 45 H 1.08995 * 117.50036 * 359.97438 * 25 15 14 46 46 H 1.08997 * 117.49233 * 144.97315 * 25 15 14 47 47 H 1.08001 * 120.03700 * 0.02562 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9955 -0.7659 1.1375 5 6 3.4818 -0.9523 0.9729 6 6 3.9690 -2.0584 0.3006 7 6 5.3320 -2.2333 0.1478 8 6 6.2114 -1.2998 0.6609 9 6 5.7257 -0.1915 1.3418 10 7 6.6142 0.7528 1.8687 11 6 7.7986 0.3549 2.3740 12 8 8.1328 -0.8114 2.2940 13 7 8.6126 1.2499 2.9679 14 6 9.9004 0.8176 3.5166 15 6 10.5692 1.9921 4.2336 16 6 10.7693 3.2327 3.4019 17 1 10.0410 4.0294 3.4365 18 6 11.8851 3.3531 2.6009 19 7 12.8179 2.4265 2.6290 20 14 12.0718 4.8325 1.4755 21 1 10.8935 5.7231 1.6292 22 1 13.3055 5.5761 1.8362 23 1 12.1645 4.3737 0.0662 24 6 10.2607 2.1806 5.7203 25 6 11.6342 1.6655 5.2826 26 6 4.3559 -0.0188 1.4937 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5739 -0.8524 29 1 -0.3632 -1.0253 -0.0709 30 1 3.0827 1.3434 -0.0708 31 1 1.5897 1.9164 -0.8524 32 1 1.7042 1.8724 0.9233 33 1 1.5091 -1.7406 1.1756 34 1 1.7976 -0.2247 2.0627 35 1 3.2834 -2.7871 -0.1060 36 1 5.7093 -3.0979 -0.3780 37 1 7.2757 -1.4344 0.5371 38 1 6.3775 1.6934 1.8702 39 1 8.3459 2.1803 3.0320 40 1 10.5431 0.4728 2.7067 41 1 9.7392 0.0042 4.2241 42 1 13.6356 2.5459 2.1211 43 1 10.2025 3.2018 6.0967 44 1 9.5816 1.4676 6.1877 45 1 11.8579 0.6140 5.4622 46 1 12.4796 2.3478 5.3707 47 1 3.9749 0.8444 2.0193 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429799995.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:22 Heat of formation + Delta-G solvation = 10.890549 kcal Electronic energy + Delta-G solvation = -25963.637915 eV Core-core repulsion = 22339.483195 eV Total energy + Delta-G solvation = -3624.154719 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.64969 -40.11397 -38.63251 -37.85636 -35.68709 -35.02033 -33.96726 -32.46965 -30.74486 -28.44134 -28.01224 -27.60873 -27.00779 -23.75622 -23.37361 -22.93051 -22.45069 -21.44212 -20.97295 -19.36772 -18.48649 -17.77014 -17.16976 -16.82793 -16.56167 -16.36871 -16.27808 -16.09222 -15.73615 -15.58255 -15.36979 -14.83521 -14.59950 -14.46762 -13.94550 -13.74793 -13.50450 -13.43243 -13.17811 -12.96587 -12.92624 -12.87422 -12.67746 -12.47476 -12.35171 -12.32564 -12.01546 -11.97571 -11.47201 -11.33315 -11.04712 -10.93294 -10.45676 -10.12806 -9.87152 -9.75883 -9.23391 -8.98213 -8.09699 -6.24219 0.41303 0.44039 1.40870 1.45176 1.53566 1.68067 2.10052 2.41760 2.79956 3.17547 3.25650 3.29954 3.57261 3.81830 3.97400 4.21052 4.23970 4.30998 4.41426 4.47759 4.50559 4.53921 4.59252 4.63343 4.67401 4.70848 4.72730 4.82832 4.84666 4.97511 5.02191 5.07719 5.08567 5.09766 5.28872 5.38725 5.46725 5.50738 5.58718 5.65311 5.69423 5.72081 5.77834 6.05904 6.07669 6.12082 6.17670 6.36364 6.83947 7.09427 7.45899 7.54688 8.97406 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.017413 B = 0.002666 C = 0.002547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.609053 B =10498.874603 C =10990.050943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.556 5.556 3 C 0.019 3.981 4 C 0.099 3.901 5 C -0.063 4.063 6 C -0.117 4.117 7 C -0.107 4.107 8 C -0.146 4.146 9 C 0.153 3.847 10 N -0.677 5.677 11 C 0.695 3.305 12 O -0.623 6.623 13 N -0.707 5.707 14 C 0.198 3.802 15 C 0.003 3.997 16 C -0.502 4.502 17 H 0.066 0.934 18 C 0.025 3.975 19 N -0.907 5.907 20 Si 0.949 3.051 21 H -0.258 1.258 22 H -0.285 1.285 23 H -0.291 1.291 24 C -0.178 4.178 25 C -0.153 4.153 26 C -0.138 4.138 27 H 0.030 0.970 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.049 0.951 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.108 0.892 38 H 0.420 0.580 39 H 0.409 0.591 40 H 0.025 0.975 41 H 0.040 0.960 42 H 0.258 0.742 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.195 -3.126 -3.560 24.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.280 5.280 3 C -0.129 4.129 4 C -0.028 4.028 5 C -0.064 4.064 6 C -0.136 4.136 7 C -0.125 4.125 8 C -0.167 4.167 9 C 0.058 3.942 10 N -0.326 5.326 11 C 0.396 3.604 12 O -0.504 6.504 13 N -0.360 5.360 14 C 0.073 3.927 15 C 0.002 3.998 16 C -0.540 4.540 17 H 0.085 0.915 18 C -0.176 4.176 19 N -0.545 5.545 20 Si 0.775 3.225 21 H -0.182 1.182 22 H -0.212 1.212 23 H -0.217 1.217 24 C -0.215 4.215 25 C -0.192 4.192 26 C -0.159 4.159 27 H 0.048 0.952 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.050 0.950 33 H 0.116 0.884 34 H 0.067 0.933 35 H 0.162 0.838 36 H 0.155 0.845 37 H 0.126 0.874 38 H 0.258 0.742 39 H 0.246 0.754 40 H 0.043 0.957 41 H 0.058 0.942 42 H 0.067 0.933 43 H 0.104 0.896 44 H 0.105 0.895 45 H 0.087 0.913 46 H 0.084 0.916 47 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -23.531 -4.406 -4.121 24.292 hybrid contribution 0.763 1.871 0.142 2.026 sum -22.768 -2.535 -3.980 23.252 Atomic orbital electron populations 1.22438 0.85840 1.03057 1.01031 1.61984 1.08860 1.14344 1.42782 1.22477 1.01029 0.88482 1.00917 1.21049 0.89984 0.99809 0.91976 1.19667 0.95317 0.94120 0.97314 1.21188 0.94800 0.98336 0.99288 1.21221 0.93478 0.98698 0.99139 1.21317 1.00492 0.96141 0.98745 1.17677 0.89179 0.91487 0.95848 1.42425 1.16451 1.10783 1.62910 1.16147 0.80716 0.84913 0.78649 1.90853 1.75812 1.18432 1.65322 1.44934 1.19141 1.11536 1.60373 1.20444 0.81600 0.95304 0.95346 1.19087 0.98819 0.94581 0.87336 1.20665 1.07402 1.01755 1.24150 0.91543 1.25709 0.95943 0.98251 0.97716 1.70118 1.07412 1.34765 1.42158 0.85648 0.78314 0.79972 0.78537 1.18210 1.21164 1.21714 1.23029 0.98488 1.01003 0.99023 1.22387 0.92331 0.98776 1.05673 1.20871 0.90072 1.01531 1.03422 0.95164 0.90771 0.90456 0.91884 0.90887 0.94978 0.88436 0.93314 0.83810 0.84530 0.87394 0.74217 0.75445 0.95651 0.94222 0.93254 0.89633 0.89531 0.91266 0.91605 0.84375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.57 127.69 1.22 1.48 16 2 N -0.56 -8.37 5.01 -953.48 -4.78 -13.15 16 3 C 0.02 0.28 9.14 127.69 1.17 1.45 16 4 C 0.10 1.47 5.12 85.56 0.44 1.91 16 5 C -0.06 -1.25 4.88 -19.88 -0.10 -1.35 16 6 C -0.12 -2.41 9.70 22.29 0.22 -2.20 16 7 C -0.11 -2.67 10.04 22.25 0.22 -2.45 16 8 C -0.15 -4.62 8.69 22.39 0.19 -4.43 16 9 C 0.15 4.40 6.29 38.15 0.24 4.64 16 10 N -0.68 -19.86 5.34 -317.17 -1.69 -21.55 16 11 C 0.70 26.68 8.41 179.06 1.51 28.18 16 12 O -0.62 -28.70 13.80 -3.99 -0.06 -28.75 16 13 N -0.71 -27.23 5.42 -478.54 -2.60 -29.82 16 14 C 0.20 8.99 5.56 86.38 0.48 9.47 16 15 C 0.00 0.12 1.60 -52.92 -0.08 0.03 16 16 C -0.50 -24.92 8.14 25.60 0.21 -24.71 16 17 H 0.07 3.15 7.82 -2.91 -0.02 3.13 16 18 C 0.02 1.28 5.43 84.66 0.46 1.74 16 19 N -0.91 -50.76 12.65 21.45 0.27 -50.49 16 20 Si 0.95 41.51 29.54 68.60 2.03 43.53 16 21 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 22 H -0.29 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 24 C -0.18 -7.07 9.93 30.62 0.30 -6.76 16 25 C -0.15 -6.98 9.17 30.62 0.28 -6.70 16 26 C -0.14 -3.06 7.88 22.39 0.18 -2.88 16 27 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.07 0.71 8.12 -2.39 -0.02 0.69 16 29 H 0.08 0.68 8.12 -2.39 -0.02 0.66 16 30 H 0.06 1.08 6.17 -2.39 -0.01 1.07 16 31 H 0.07 0.95 8.12 -2.39 -0.02 0.93 16 32 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.10 1.19 8.01 -2.39 -0.02 1.17 16 34 H 0.05 0.68 8.06 -2.39 -0.02 0.66 16 35 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.11 4.12 6.25 -2.91 -0.02 4.10 16 38 H 0.42 9.35 8.84 -92.71 -0.82 8.53 16 39 H 0.41 14.03 8.01 -92.71 -0.74 13.29 16 40 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 41 H 0.04 1.78 8.10 -2.39 -0.02 1.76 16 42 H 0.26 13.97 8.32 -92.71 -0.77 13.20 16 43 H 0.09 3.27 8.14 -2.39 -0.02 3.25 16 44 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 46 H 0.07 3.25 8.14 -2.39 -0.02 3.23 16 47 H 0.14 2.46 8.03 -2.91 -0.02 2.44 16 Total: -1.00 -65.02 387.72 -0.48 -65.50 By element: Atomic # 1 Polarization: 37.90 SS G_CDS: -0.59 Total: 37.31 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 6.93 Total: -2.58 kcal Atomic # 7 Polarization: -106.21 SS G_CDS: -8.80 Total: -115.01 kcal Atomic # 8 Polarization: -28.70 SS G_CDS: -0.06 Total: -28.75 kcal Atomic # 14 Polarization: 41.51 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.02 -0.48 -65.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429799995.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.389 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.372 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds