Wall clock time and date at job start Tue Mar 31 2020 11:48:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99764 * 2 1 4 4 C 1.53003 * 109.47268 * 270.00389 * 3 2 1 5 5 N 1.46501 * 109.46760 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99913 * 179.97438 * 5 4 3 7 7 O 1.21594 * 119.99686 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00277 * 180.26878 * 6 5 4 9 9 C 1.46492 * 120.00065 * 179.72548 * 8 6 5 10 10 C 1.53001 * 109.47224 * 178.58996 * 9 8 6 11 11 C 1.50704 * 115.55284 * 65.14229 * 10 9 8 12 12 H 1.08002 * 119.99523 * 265.48216 * 11 10 9 13 13 C 1.37874 * 119.99882 * 85.47759 * 11 10 9 14 14 N 1.31512 * 120.00140 * 353.64820 * 13 11 10 15 15 Si 1.86804 * 119.99776 * 173.65340 * 13 11 10 16 16 H 1.48494 * 109.47265 * 89.99695 * 15 13 11 17 17 H 1.48500 * 109.46879 * 209.99862 * 15 13 11 18 18 H 1.48495 * 109.46906 * 329.99756 * 15 13 11 19 19 C 1.53003 * 117.49498 * 279.47392 * 10 9 8 20 20 C 1.53003 * 117.49990 * 210.81595 * 10 9 8 21 21 C 1.39675 * 120.00037 * 180.02562 * 2 1 3 22 22 C 1.38911 * 120.07160 * 179.72024 * 21 2 1 23 23 C 1.38112 * 119.92217 * 179.76138 * 22 21 2 24 24 C 1.38290 * 120.07190 * 0.51409 * 23 22 21 25 25 C 1.38288 * 120.15072 * 359.73901 * 24 23 22 26 26 C 1.38105 * 120.07370 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47099 * 89.99580 * 1 2 3 28 28 H 1.08998 * 109.46687 * 209.99525 * 1 2 3 29 29 H 1.08999 * 109.47229 * 329.99516 * 1 2 3 30 30 H 1.09001 * 109.46645 * 149.99950 * 3 2 1 31 31 H 1.08996 * 109.46956 * 30.00637 * 3 2 1 32 32 H 1.08991 * 109.47108 * 60.00150 * 4 3 2 33 33 H 1.08997 * 109.46856 * 300.00239 * 4 3 2 34 34 H 0.97000 * 120.00397 * 0.02562 * 5 4 3 35 35 H 0.97001 * 119.99400 * 359.73616 * 8 6 5 36 36 H 1.09000 * 109.47226 * 298.58552 * 9 8 6 37 37 H 1.08995 * 109.47060 * 58.59015 * 9 8 6 38 38 H 0.96994 * 120.00241 * 185.07319 * 14 13 11 39 39 H 1.09000 * 117.50377 * 359.97438 * 19 10 9 40 40 H 1.09007 * 117.49885 * 145.01977 * 19 10 9 41 41 H 1.08998 * 117.49802 * 214.97870 * 20 10 9 42 42 H 1.09003 * 117.49862 * 359.97310 * 20 10 9 43 43 H 1.07996 * 120.03944 * 0.02562 * 22 21 2 44 44 H 1.07998 * 119.96241 * 180.25310 * 23 22 21 45 45 H 1.07997 * 119.92205 * 179.72078 * 24 23 22 46 46 H 1.07999 * 119.96321 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.03424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 7 3.1854 2.9790 -1.4424 6 6 3.5229 3.5624 -2.6096 7 8 3.2185 3.0362 -3.6626 8 7 4.2019 4.7266 -2.6095 9 6 4.5739 5.3576 -3.8782 10 6 5.3003 6.6749 -3.5989 11 6 6.6294 6.5488 -2.8999 12 1 6.6848 6.6381 -1.8250 13 6 7.7746 6.3193 -3.6326 14 7 7.6932 6.0863 -4.9243 15 14 9.4419 6.3394 -2.7904 16 1 9.7716 4.9726 -2.3127 17 1 10.4778 6.7902 -3.7541 18 1 9.4016 7.2713 -1.6350 19 6 4.4426 7.8986 -3.2704 20 6 5.1462 7.7983 -4.6262 21 6 2.1634 -1.2096 -0.0005 22 6 3.5525 -1.2113 -0.0064 23 6 4.2400 -2.4092 -0.0019 24 6 3.5469 -3.6059 -0.0024 25 6 2.1641 -3.6077 -0.0018 26 6 1.4705 -2.4135 -0.0014 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.1499 1.1384 0.5139 31 1 1.6084 2.0283 0.5139 32 1 1.5001 1.8409 -1.9562 33 1 3.0415 0.9509 -1.9564 34 1 3.4285 3.3986 -0.6023 35 1 4.4444 5.1465 -1.7694 36 1 5.2317 4.6913 -4.4363 37 1 3.6755 5.5550 -4.4629 38 1 8.4896 5.8524 -5.4261 39 1 3.3610 7.7654 -3.2536 40 1 4.8400 8.6127 -2.5489 41 1 6.0060 8.4462 -4.7962 42 1 4.5276 7.5987 -5.5012 43 1 4.0943 -0.2771 -0.0101 44 1 5.3200 -2.4113 -0.0024 45 1 4.0870 -4.5412 -0.0034 46 1 1.6259 -4.5441 -0.0026 47 1 0.3905 -2.4157 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430188855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:30 Heat of formation + Delta-G solvation = 30.721265 kcal Electronic energy + Delta-G solvation = -25674.689834 eV Core-core repulsion = 22051.395039 eV Total energy + Delta-G solvation = -3623.294795 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.90442 -39.29306 -37.01594 -36.56529 -34.33701 -33.22953 -31.97092 -31.29495 -30.27256 -29.20596 -26.51715 -25.67364 -24.88780 -23.15508 -22.20205 -21.21023 -20.86121 -20.22398 -19.37943 -18.00690 -17.62180 -16.45295 -16.04293 -15.73487 -15.39882 -15.31976 -14.71761 -14.68902 -14.53075 -14.05235 -13.93654 -13.82302 -13.56899 -13.37968 -13.09519 -12.77425 -12.65563 -12.31671 -12.15138 -11.90173 -11.58985 -11.56202 -11.39172 -11.00341 -10.93850 -10.91754 -10.53126 -10.27048 -10.07812 -9.75612 -9.52472 -9.04824 -8.97418 -8.86038 -8.49476 -8.25894 -7.97187 -7.51040 -6.07581 -4.16384 1.31762 1.47328 2.66423 3.25344 3.33369 3.34644 3.40047 3.77711 3.80414 4.34889 4.57962 4.64849 4.77047 4.85850 4.87464 4.97485 5.05013 5.15589 5.20584 5.26507 5.34464 5.36729 5.40789 5.48911 5.56940 5.74842 5.89189 5.92674 6.03639 6.12798 6.34530 6.36609 6.47405 6.52432 6.59936 6.67960 6.69430 6.73571 6.85511 7.02570 7.09092 7.28857 7.32743 7.40838 7.47347 7.59076 7.81205 8.34102 8.65618 8.84216 9.20413 9.50345 11.00250 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002577 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.606593 B =10863.989178 C =12032.817539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.628 5.628 3 C 0.114 3.886 4 C 0.123 3.877 5 N -0.754 5.754 6 C 0.699 3.301 7 O -0.602 6.602 8 N -0.719 5.719 9 C 0.182 3.818 10 C 0.028 3.972 11 C -0.501 4.501 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.890 3.110 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C -0.211 4.211 20 C -0.148 4.148 21 C 0.215 3.785 22 C -0.193 4.193 23 C -0.072 4.072 24 C -0.181 4.181 25 C -0.076 4.076 26 C -0.198 4.198 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.393 0.607 35 H 0.396 0.604 36 H 0.070 0.930 37 H 0.034 0.966 38 H 0.262 0.738 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.123 0.877 44 H 0.120 0.880 45 H 0.116 0.884 46 H 0.118 0.882 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.546 -13.529 13.029 22.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.340 5.340 3 C -0.010 4.010 4 C -0.003 4.003 5 N -0.412 5.412 6 C 0.398 3.602 7 O -0.481 6.481 8 N -0.372 5.372 9 C 0.058 3.942 10 C 0.027 3.973 11 C -0.538 4.538 12 H 0.077 0.923 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C -0.248 4.248 20 C -0.186 4.186 21 C 0.114 3.886 22 C -0.216 4.216 23 C -0.091 4.091 24 C -0.201 4.201 25 C -0.094 4.094 26 C -0.220 4.220 27 H 0.068 0.932 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.099 0.901 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.226 0.774 35 H 0.229 0.771 36 H 0.088 0.912 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.083 0.917 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.084 0.916 43 H 0.141 0.859 44 H 0.138 0.862 45 H 0.134 0.866 46 H 0.136 0.864 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -12.807 -13.807 11.829 22.239 hybrid contribution 1.216 0.402 1.005 1.628 sum -11.591 -13.405 12.834 21.880 Atomic orbital electron populations 1.21674 0.79312 1.02578 1.01461 1.46254 1.04890 1.02532 1.80280 1.21570 0.97981 0.85355 0.96119 1.21491 0.96767 0.85286 0.96774 1.44940 1.63330 1.25297 1.07604 1.16012 0.79282 0.81292 0.83604 1.90883 1.61286 1.65641 1.30316 1.45130 1.58463 1.22400 1.11177 1.20852 0.96070 0.94732 0.82516 1.19040 0.94136 0.84999 0.99079 1.20322 0.89411 1.51346 0.92738 0.92259 1.24987 0.98891 0.94487 0.94676 1.69971 1.29348 1.45068 1.06571 0.86635 0.83973 0.78306 0.79354 1.20673 1.21165 1.19852 1.23021 0.96290 1.05086 1.00402 1.22493 1.00865 1.04447 0.90783 1.17844 0.91256 0.85582 0.93928 1.20780 0.92174 0.98956 1.09642 1.20939 0.99626 0.91977 0.96544 1.20919 0.94292 0.97844 1.07011 1.20872 0.94252 0.97106 0.97204 1.20666 0.99548 0.91142 1.10689 0.93180 0.91290 0.91401 0.89954 0.90098 0.91907 0.91615 0.77374 0.77106 0.91210 0.94759 0.92828 0.91667 0.90404 0.89806 0.91643 0.85866 0.86160 0.86602 0.86376 0.86137 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.66 10.23 59.85 0.61 1.27 16 2 N -0.63 -5.89 3.01 -179.62 -0.54 -6.43 16 3 C 0.11 1.02 5.31 -4.04 -0.02 1.00 16 4 C 0.12 1.54 6.00 -4.04 -0.02 1.52 16 5 N -0.75 -10.40 5.56 -65.23 -0.36 -10.77 16 6 C 0.70 13.45 8.57 -86.92 -0.74 12.71 16 7 O -0.60 -14.23 16.34 5.28 0.09 -14.14 16 8 N -0.72 -14.03 5.48 -65.23 -0.36 -14.39 16 9 C 0.18 4.19 5.50 -4.05 -0.02 4.17 16 10 C 0.03 0.66 1.38 -155.65 -0.21 0.45 16 11 C -0.50 -12.80 8.63 -34.44 -0.30 -13.10 16 12 H 0.06 1.48 7.82 -52.49 -0.41 1.07 16 13 C 0.07 1.96 5.39 -17.82 -0.10 1.86 16 14 N -0.87 -24.33 12.91 55.43 0.72 -23.62 16 15 Si 0.89 20.50 29.55 -169.99 -5.02 15.47 16 16 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 19 C -0.21 -4.35 9.96 -26.69 -0.27 -4.61 16 20 C -0.15 -3.37 9.41 -26.69 -0.25 -3.62 16 21 C 0.21 2.30 6.55 -83.79 -0.55 1.75 16 22 C -0.19 -2.14 9.21 -39.38 -0.36 -2.50 16 23 C -0.07 -0.75 10.04 -39.61 -0.40 -1.15 16 24 C -0.18 -1.75 10.04 -39.54 -0.40 -2.14 16 25 C -0.08 -0.70 10.04 -39.61 -0.40 -1.10 16 26 C -0.20 -1.93 9.21 -39.38 -0.36 -2.30 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 29 H 0.07 0.39 7.89 -51.93 -0.41 -0.02 16 30 H 0.08 0.70 6.21 -51.93 -0.32 0.38 16 31 H 0.08 0.58 7.89 -51.93 -0.41 0.17 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.39 4.16 8.49 -40.82 -0.35 3.82 16 35 H 0.40 6.89 8.38 -40.82 -0.34 6.55 16 36 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 37 H 0.03 0.79 8.09 -51.93 -0.42 0.37 16 38 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 39 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 40 H 0.08 1.57 8.14 -51.92 -0.42 1.15 16 41 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.00 16 43 H 0.12 1.32 6.15 -52.49 -0.32 0.99 16 44 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 46 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 47 H 0.12 0.96 6.14 -52.49 -0.32 0.64 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -31.88 390.52 -10.80 -42.69 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -7.41 Total: 11.11 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: -3.79 Total: -5.81 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.54 Total: -55.21 kcal Atomic # 8 Polarization: -14.23 SS G_CDS: 0.09 Total: -14.14 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.88 -10.80 -42.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430188855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.407 kcal (2) G-P(sol) polarization free energy of solvation -31.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds