Wall clock time and date at job start Tue Mar 31 2020 11:48:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99764 * 2 1 4 4 C 1.53003 * 109.47268 * 270.00389 * 3 2 1 5 5 N 1.46501 * 109.46760 * 180.02562 * 4 3 2 6 6 C 1.34780 * 119.99913 * 179.97438 * 5 4 3 7 7 O 1.21594 * 119.99686 * 0.02562 * 6 5 4 8 8 N 1.34772 * 120.00277 * 180.26878 * 6 5 4 9 9 C 1.46492 * 120.00065 * 179.72548 * 8 6 5 10 10 C 1.53001 * 109.47224 * 178.58996 * 9 8 6 11 11 C 1.50704 * 115.55284 * 65.14229 * 10 9 8 12 12 H 1.08002 * 119.99523 * 265.48216 * 11 10 9 13 13 C 1.37874 * 119.99882 * 85.47759 * 11 10 9 14 14 N 1.31512 * 120.00140 * 353.64820 * 13 11 10 15 15 Si 1.86804 * 119.99776 * 173.65340 * 13 11 10 16 16 H 1.48494 * 109.47265 * 89.99695 * 15 13 11 17 17 H 1.48500 * 109.46879 * 209.99862 * 15 13 11 18 18 H 1.48495 * 109.46906 * 329.99756 * 15 13 11 19 19 C 1.53003 * 117.49498 * 279.47392 * 10 9 8 20 20 C 1.53003 * 117.49990 * 210.81595 * 10 9 8 21 21 C 1.39675 * 120.00037 * 180.02562 * 2 1 3 22 22 C 1.38911 * 120.07160 * 179.72024 * 21 2 1 23 23 C 1.38112 * 119.92217 * 179.76138 * 22 21 2 24 24 C 1.38290 * 120.07190 * 0.51409 * 23 22 21 25 25 C 1.38288 * 120.15072 * 359.73901 * 24 23 22 26 26 C 1.38105 * 120.07370 * 0.02562 * 25 24 23 27 27 H 1.09001 * 109.47099 * 89.99580 * 1 2 3 28 28 H 1.08998 * 109.46687 * 209.99525 * 1 2 3 29 29 H 1.08999 * 109.47229 * 329.99516 * 1 2 3 30 30 H 1.09001 * 109.46645 * 149.99950 * 3 2 1 31 31 H 1.08996 * 109.46956 * 30.00637 * 3 2 1 32 32 H 1.08991 * 109.47108 * 60.00150 * 4 3 2 33 33 H 1.08997 * 109.46856 * 300.00239 * 4 3 2 34 34 H 0.97000 * 120.00397 * 0.02562 * 5 4 3 35 35 H 0.97001 * 119.99400 * 359.73616 * 8 6 5 36 36 H 1.09000 * 109.47226 * 298.58552 * 9 8 6 37 37 H 1.08995 * 109.47060 * 58.59015 * 9 8 6 38 38 H 0.96994 * 120.00241 * 185.07319 * 14 13 11 39 39 H 1.09000 * 117.50377 * 359.97438 * 19 10 9 40 40 H 1.09007 * 117.49885 * 145.01977 * 19 10 9 41 41 H 1.08998 * 117.49802 * 214.97870 * 20 10 9 42 42 H 1.09003 * 117.49862 * 359.97310 * 20 10 9 43 43 H 1.07996 * 120.03944 * 0.02562 * 22 21 2 44 44 H 1.07998 * 119.96241 * 180.25310 * 23 22 21 45 45 H 1.07997 * 119.92205 * 179.72078 * 24 23 22 46 46 H 1.07999 * 119.96321 * 179.97438 * 25 24 23 47 47 H 1.07998 * 120.03424 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7106 -1.4425 5 7 3.1854 2.9790 -1.4424 6 6 3.5229 3.5624 -2.6096 7 8 3.2185 3.0362 -3.6626 8 7 4.2019 4.7266 -2.6095 9 6 4.5739 5.3576 -3.8782 10 6 5.3003 6.6749 -3.5989 11 6 6.6294 6.5488 -2.8999 12 1 6.6848 6.6381 -1.8250 13 6 7.7746 6.3193 -3.6326 14 7 7.6932 6.0863 -4.9243 15 14 9.4419 6.3394 -2.7904 16 1 9.7716 4.9726 -2.3127 17 1 10.4778 6.7902 -3.7541 18 1 9.4016 7.2713 -1.6350 19 6 4.4426 7.8986 -3.2704 20 6 5.1462 7.7983 -4.6262 21 6 2.1634 -1.2096 -0.0005 22 6 3.5525 -1.2113 -0.0064 23 6 4.2400 -2.4092 -0.0019 24 6 3.5469 -3.6059 -0.0024 25 6 2.1641 -3.6077 -0.0018 26 6 1.4705 -2.4135 -0.0014 27 1 -0.3633 0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 3.1499 1.1384 0.5139 31 1 1.6084 2.0283 0.5139 32 1 1.5001 1.8409 -1.9562 33 1 3.0415 0.9509 -1.9564 34 1 3.4285 3.3986 -0.6023 35 1 4.4444 5.1465 -1.7694 36 1 5.2317 4.6913 -4.4363 37 1 3.6755 5.5550 -4.4629 38 1 8.4896 5.8524 -5.4261 39 1 3.3610 7.7654 -3.2536 40 1 4.8400 8.6127 -2.5489 41 1 6.0060 8.4462 -4.7962 42 1 4.5276 7.5987 -5.5012 43 1 4.0943 -0.2771 -0.0101 44 1 5.3200 -2.4113 -0.0024 45 1 4.0870 -4.5412 -0.0034 46 1 1.6259 -4.5441 -0.0026 47 1 0.3905 -2.4157 -0.0014 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430188855.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:48:29 Heat of formation + Delta-G solvation = 11.317151 kcal Electronic energy + Delta-G solvation = -25675.531259 eV Core-core repulsion = 22051.395039 eV Total energy + Delta-G solvation = -3624.136220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.03600 -40.43753 -38.59929 -37.57901 -35.55572 -34.92152 -33.95328 -32.07146 -31.10535 -30.04340 -28.05476 -27.19527 -26.20994 -24.09894 -22.98550 -22.93306 -21.93964 -21.43106 -21.21620 -19.29263 -18.58341 -18.10917 -17.30339 -16.82332 -16.55573 -16.43653 -16.35046 -15.79100 -15.73669 -15.48047 -15.06142 -14.85061 -14.68714 -14.46014 -14.35557 -14.20982 -13.63181 -13.46026 -13.44196 -13.06792 -12.91063 -12.84142 -12.82559 -12.36955 -12.32876 -12.25070 -12.02759 -11.65052 -11.52823 -11.32147 -10.84292 -10.79804 -10.45427 -10.32378 -10.03848 -9.79645 -9.59931 -8.24161 -8.08588 -6.21818 0.56560 0.71836 1.42744 1.45412 1.53669 1.65180 2.22511 2.33572 2.43484 3.02107 3.19732 3.37569 3.65243 3.85348 3.90872 4.00475 4.14507 4.26488 4.34530 4.36228 4.45906 4.57563 4.60611 4.64876 4.67062 4.70764 4.74995 4.78878 4.88985 4.90982 4.96670 5.01217 5.05465 5.19052 5.28670 5.37242 5.48418 5.60033 5.62822 5.64342 5.71696 5.78120 5.79757 5.99949 6.14472 6.32752 6.37973 6.56039 6.85456 7.24416 7.47690 7.67913 8.99005 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015739 B = 0.002577 C = 0.002326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1778.606593 B =10863.989178 C =12032.817539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.632 5.632 3 C 0.124 3.876 4 C 0.129 3.871 5 N -0.729 5.729 6 C 0.695 3.305 7 O -0.649 6.649 8 N -0.713 5.713 9 C 0.199 3.801 10 C 0.006 3.994 11 C -0.503 4.503 12 H 0.066 0.934 13 C 0.023 3.977 14 N -0.909 5.909 15 Si 0.950 3.050 16 H -0.281 1.281 17 H -0.291 1.291 18 H -0.262 1.262 19 C -0.174 4.174 20 C -0.161 4.161 21 C 0.200 3.800 22 C -0.214 4.214 23 C -0.087 4.087 24 C -0.191 4.191 25 C -0.080 4.080 26 C -0.206 4.206 27 H 0.044 0.956 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.109 0.891 32 H 0.053 0.947 33 H 0.037 0.963 34 H 0.413 0.587 35 H 0.408 0.592 36 H 0.023 0.977 37 H 0.032 0.968 38 H 0.258 0.742 39 H 0.089 0.911 40 H 0.087 0.913 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.132 0.868 46 H 0.142 0.858 47 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.680 -13.593 15.627 24.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.343 5.343 3 C -0.001 4.001 4 C 0.003 3.997 5 N -0.387 5.387 6 C 0.395 3.605 7 O -0.532 6.532 8 N -0.366 5.366 9 C 0.074 3.926 10 C 0.005 3.995 11 C -0.541 4.541 12 H 0.084 0.916 13 C -0.178 4.178 14 N -0.547 5.547 15 Si 0.776 3.224 16 H -0.207 1.207 17 H -0.217 1.217 18 H -0.186 1.186 19 C -0.211 4.211 20 C -0.199 4.199 21 C 0.099 3.901 22 C -0.236 4.236 23 C -0.106 4.106 24 C -0.210 4.210 25 C -0.099 4.099 26 C -0.228 4.228 27 H 0.062 0.938 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.127 0.873 32 H 0.071 0.929 33 H 0.056 0.944 34 H 0.250 0.750 35 H 0.244 0.756 36 H 0.042 0.958 37 H 0.050 0.950 38 H 0.067 0.933 39 H 0.107 0.893 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.088 0.912 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.150 0.850 46 H 0.160 0.840 47 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -13.958 -13.864 14.516 24.449 hybrid contribution 1.516 0.368 0.192 1.572 sum -12.442 -13.496 14.709 23.522 Atomic orbital electron populations 1.21835 0.77928 1.04119 1.01546 1.46397 1.05781 1.02112 1.79966 1.21518 0.99065 0.86015 0.93454 1.21543 0.95289 0.83650 0.99242 1.44695 1.62052 1.25186 1.06788 1.16204 0.78973 0.81029 0.84312 1.90853 1.63021 1.66747 1.32586 1.44872 1.58528 1.22639 1.10550 1.20395 0.94829 0.93841 0.83535 1.19048 0.94486 0.85769 1.00179 1.20669 0.90303 1.49991 0.93129 0.91604 1.25725 1.02261 0.94586 0.95186 1.70107 1.29843 1.46727 1.07982 0.85678 0.79938 0.78266 0.78486 1.20664 1.21711 1.18595 1.23006 0.97168 1.02506 0.98390 1.22442 1.00989 1.04314 0.92170 1.18062 0.91356 0.86532 0.94194 1.20905 0.92768 0.99158 1.10811 1.21172 1.00318 0.92281 0.96800 1.21205 0.94848 0.98259 1.06733 1.21221 0.94322 0.98048 0.96271 1.20952 1.00548 0.90996 1.10328 0.93783 0.90106 0.89582 0.89336 0.87299 0.92899 0.94424 0.74999 0.75631 0.95810 0.95013 0.93287 0.89292 0.89403 0.91746 0.91222 0.86218 0.85369 0.84971 0.84044 0.84463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.06 10.23 127.77 1.31 2.36 16 2 N -0.63 -10.85 3.01 -722.18 -2.17 -13.02 16 3 C 0.12 1.98 5.31 86.38 0.46 2.43 16 4 C 0.13 3.15 6.00 86.38 0.52 3.66 16 5 N -0.73 -19.23 5.56 -478.53 -2.66 -21.89 16 6 C 0.70 26.66 8.57 179.05 1.53 28.19 16 7 O -0.65 -31.39 16.34 -4.01 -0.07 -31.45 16 8 N -0.71 -27.40 5.48 -478.55 -2.62 -30.02 16 9 C 0.20 9.28 5.50 86.38 0.48 9.76 16 10 C 0.01 0.28 1.38 -52.92 -0.07 0.20 16 11 C -0.50 -25.43 8.63 25.60 0.22 -25.21 16 12 H 0.07 3.17 7.82 -2.91 -0.02 3.15 16 13 C 0.02 1.22 5.39 84.65 0.46 1.67 16 14 N -0.91 -51.81 12.91 21.45 0.28 -51.53 16 15 Si 0.95 42.08 29.55 68.60 2.03 44.11 16 16 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 19 C -0.17 -6.77 9.96 30.62 0.30 -6.47 16 20 C -0.16 -7.32 9.41 30.62 0.29 -7.03 16 21 C 0.20 4.10 6.55 38.21 0.25 4.35 16 22 C -0.21 -4.71 9.21 22.40 0.21 -4.50 16 23 C -0.09 -1.79 10.04 22.25 0.22 -1.57 16 24 C -0.19 -3.49 10.04 22.29 0.22 -3.27 16 25 C -0.08 -1.36 10.04 22.25 0.22 -1.14 16 26 C -0.21 -3.72 9.21 22.40 0.21 -3.52 16 27 H 0.04 0.58 8.14 -2.39 -0.02 0.57 16 28 H 0.08 0.77 6.20 -2.39 -0.01 0.76 16 29 H 0.09 0.72 7.89 -2.39 -0.02 0.70 16 30 H 0.09 1.34 6.21 -2.39 -0.01 1.33 16 31 H 0.11 1.18 7.89 -2.39 -0.02 1.16 16 32 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.41 7.73 8.49 -92.71 -0.79 6.94 16 35 H 0.41 13.52 8.38 -92.71 -0.78 12.74 16 36 H 0.02 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.03 1.47 8.09 -2.39 -0.02 1.45 16 38 H 0.26 14.24 8.32 -92.71 -0.77 13.47 16 39 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.09 3.27 8.14 -2.38 -0.02 3.25 16 41 H 0.06 3.15 8.14 -2.39 -0.02 3.13 16 42 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 43 H 0.12 2.58 6.15 -2.91 -0.02 2.56 16 44 H 0.13 2.27 8.06 -2.91 -0.02 2.24 16 45 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 46 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 47 H 0.14 1.90 6.14 -2.91 -0.02 1.88 16 Total: -1.00 -70.40 390.52 1.02 -69.38 By element: Atomic # 1 Polarization: 35.08 SS G_CDS: -0.59 Total: 34.50 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 6.82 Total: -0.07 kcal Atomic # 7 Polarization: -109.29 SS G_CDS: -7.18 Total: -116.47 kcal Atomic # 8 Polarization: -31.39 SS G_CDS: -0.07 Total: -31.45 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Total: -70.40 1.02 -69.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430188855.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.696 kcal (2) G-P(sol) polarization free energy of solvation -70.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds