Wall clock time and date at job start Tue Mar 31 2020 11:42:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46905 * 110.99800 * 2 1
4 4 C 1.46904 * 110.99800 * 123.94991 * 2 1 3
5 5 H 1.09003 * 110.26907 * 182.91588 * 4 2 1
6 6 C 1.54340 * 110.30312 * 304.99233 * 4 2 1
7 7 C 1.54336 * 102.39914 * 145.30234 * 6 4 2
8 8 C 1.51387 * 105.17150 * 333.62417 * 7 6 4
9 9 C 1.38388 * 130.32701 * 197.19922 * 8 7 6
10 10 C 1.38728 * 120.15932 * 180.02562 * 9 8 7
11 11 N 1.39943 * 120.10378 * 179.97438 * 10 9 8
12 12 C 1.34775 * 119.99952 * 147.08212 * 11 10 9
13 13 O 1.21591 * 120.00038 * 355.21291 * 12 11 10
14 14 N 1.34777 * 120.00308 * 174.93320 * 12 11 10
15 15 C 1.46499 * 120.00110 * 180.02562 * 14 12 11
16 16 C 1.53000 * 109.46977 * 180.02562 * 15 14 12
17 17 C 1.50708 * 109.47148 * 180.02562 * 16 15 14
18 18 H 1.08001 * 119.99511 * 359.97438 * 17 16 15
19 19 C 1.37868 * 119.99719 * 179.97438 * 17 16 15
20 20 N 1.31520 * 119.99624 * 179.97438 * 19 17 16
21 21 Si 1.86796 * 120.00473 * 0.02562 * 19 17 16
22 22 H 1.48500 * 109.47371 * 90.00238 * 21 19 17
23 23 H 1.48511 * 109.47228 * 209.99877 * 21 19 17
24 24 H 1.48497 * 109.47268 * 329.99744 * 21 19 17
25 25 C 1.38878 * 119.78779 * 0.25586 * 10 9 8
26 26 C 1.37976 * 119.86469 * 359.44596 * 25 10 9
27 27 C 1.38282 * 109.75238 * 17.20447 * 8 7 6
28 28 H 1.09006 * 109.47460 * 302.55718 * 1 2 3
29 29 H 1.09003 * 109.47083 * 62.55610 * 1 2 3
30 30 H 1.09003 * 109.47164 * 182.55569 * 1 2 3
31 31 H 1.09001 * 109.46603 * 183.95214 * 3 2 1
32 32 H 1.08994 * 109.47010 * 303.94695 * 3 2 1
33 33 H 1.08998 * 109.46947 * 63.95486 * 3 2 1
34 34 H 1.08993 * 110.82177 * 27.07316 * 6 4 2
35 35 H 1.09002 * 110.98910 * 263.60306 * 6 4 2
36 36 H 1.08993 * 110.30516 * 214.69988 * 7 6 4
37 37 H 1.09006 * 110.38961 * 92.58800 * 7 6 4
38 38 H 1.08000 * 119.91577 * 0.02562 * 9 8 7
39 39 H 0.97005 * 120.00375 * 327.09233 * 11 10 9
40 40 H 0.97001 * 119.99569 * 359.97438 * 14 12 11
41 41 H 1.08998 * 109.46978 * 299.99948 * 15 14 12
42 42 H 1.08997 * 109.47162 * 60.00237 * 15 14 12
43 43 H 1.08998 * 109.47126 * 299.99737 * 16 15 14
44 44 H 1.09004 * 109.47451 * 59.99982 * 16 15 14
45 45 H 0.97003 * 120.00105 * 180.02562 * 20 19 17
46 46 H 1.08000 * 120.07044 * 179.72440 * 25 10 9
47 47 H 1.08001 * 119.84750 * 180.25488 * 26 25 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9954 -0.7659 1.1377
5 1 3.0841 -0.7153 1.1556
6 6 1.4123 -0.2276 2.4614
7 6 1.2776 -1.5097 3.3099
8 6 1.1232 -2.6337 2.3076
9 6 0.6588 -3.9264 2.4761
10 6 0.6067 -4.7947 1.3953
11 7 0.1374 -6.1019 1.5671
12 6 -0.5305 -6.7146 0.5697
13 8 -0.8015 -6.1033 -0.4458
14 7 -0.8931 -8.0066 0.6956
15 6 -1.6186 -8.6727 -0.3889
16 6 -1.9073 -10.1224 0.0059
17 6 -2.6532 -10.8080 -1.1099
18 1 -2.8971 -10.2639 -2.0104
19 6 -3.0239 -12.1296 -0.9811
20 7 -3.6752 -12.7277 -1.9547
21 14 -2.6025 -13.0704 0.5766
22 1 -3.7072 -12.9232 1.5580
23 1 -2.4171 -14.5077 0.2521
24 1 -1.3482 -12.5286 1.1582
25 6 1.0271 -4.3643 0.1436
26 6 1.4836 -3.0727 -0.0212
27 6 1.5358 -2.2063 1.0589
28 1 -0.3634 0.5530 0.8662
29 1 -0.3633 0.4736 -0.9120
30 1 -0.3633 -1.0267 0.0458
31 1 3.0827 1.3432 -0.0708
32 1 1.5898 1.9163 -0.8525
33 1 1.7043 1.8724 0.9233
34 1 0.4379 0.2323 2.2969
35 1 2.0975 0.4778 2.9316
36 1 0.3968 -1.4495 3.9491
37 1 2.1725 -1.6615 3.9134
38 1 0.3363 -4.2601 3.4513
39 1 0.2927 -6.5669 2.4042
40 1 -0.6730 -8.4955 1.5039
41 1 -2.5587 -8.1519 -0.5707
42 1 -1.0130 -8.6563 -1.2950
43 1 -0.9675 -10.6435 0.1880
44 1 -2.5132 -10.1386 0.9120
45 1 -3.9364 -13.6575 -1.8640
46 1 0.9927 -5.0378 -0.6999
47 1 1.8066 -2.7371 -0.9956
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000455843263.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:20
Heat of formation + Delta-G solvation = 5.764016 kcal
Electronic energy + Delta-G solvation = -25724.548673 eV
Core-core repulsion = 22100.171651 eV
Total energy + Delta-G solvation = -3624.377022 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.61 seconds
Orbital eigenvalues (eV)
-40.93144 -39.90547 -37.62255 -35.48874 -34.76295 -33.67753 -32.75336 -30.91320
-30.06017 -28.47895 -27.82158 -27.09504 -24.86102 -23.69093 -22.68073 -21.93811
-20.82429 -20.13590 -20.03882 -18.31662 -17.16451 -16.80941 -16.50511 -16.27313
-15.73894 -14.97760 -14.78053 -14.71680 -14.57726 -14.21301 -14.12811 -13.87370
-13.57138 -13.38399 -13.24118 -12.92605 -12.63064 -12.60180 -12.22838 -12.07051
-11.93205 -11.84979 -11.51795 -11.50236 -11.39298 -11.22255 -10.82859 -10.44826
-10.31325 -10.10000 -10.00026 -9.77837 -9.34858 -8.78821 -8.68543 -8.60061
-8.59231 -7.92335 -6.12337 -4.12665 1.25479 1.36288 2.76325 3.23760
3.26845 3.31360 3.32507 3.63545 3.81390 4.25291 4.26208 4.36099
4.40196 4.62391 4.84638 4.87166 4.95965 4.99159 5.05474 5.17656
5.20378 5.27728 5.35199 5.38377 5.45522 5.49699 5.54235 5.57920
5.73157 5.79045 5.82164 5.93219 6.04305 6.19448 6.23272 6.32807
6.50167 6.52977 6.56810 6.70471 6.76148 6.79195 6.96219 7.06496
7.19808 7.21679 7.64744 8.12011 8.42916 8.72493 8.92146 9.47439
11.00624
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.032954 B = 0.002103 C = 0.002019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.459112 B =13308.366858 C =13864.128009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.019 3.981
2 N -0.536 5.536
3 C 0.023 3.977
4 C 0.128 3.872
5 H 0.094 0.906
6 C -0.157 4.157
7 C -0.075 4.075
8 C -0.079 4.079
9 C -0.144 4.144
10 C 0.182 3.818
11 N -0.692 5.692
12 C 0.697 3.303
13 O -0.574 6.574
14 N -0.736 5.736
15 C 0.147 3.853
16 C -0.022 4.022
17 C -0.523 4.523
18 H 0.076 0.924
19 C 0.069 3.931
20 N -0.897 5.897
21 Si 0.883 3.117
22 H -0.277 1.277
23 H -0.287 1.287
24 H -0.267 1.267
25 C -0.124 4.124
26 C -0.065 4.065
27 C -0.114 4.114
28 H 0.029 0.971
29 H 0.067 0.933
30 H 0.074 0.926
31 H 0.067 0.933
32 H 0.068 0.932
33 H 0.026 0.974
34 H 0.078 0.922
35 H 0.074 0.926
36 H 0.073 0.927
37 H 0.080 0.920
38 H 0.120 0.880
39 H 0.404 0.596
40 H 0.393 0.607
41 H 0.062 0.938
42 H 0.063 0.937
43 H 0.022 0.978
44 H 0.018 0.982
45 H 0.265 0.735
46 H 0.140 0.860
47 H 0.126 0.874
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 13.615 26.276 12.804 32.245
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.128 4.128
2 N -0.258 5.258
3 C -0.125 4.125
4 C 0.019 3.981
5 H 0.112 0.888
6 C -0.196 4.196
7 C -0.112 4.112
8 C -0.080 4.080
9 C -0.165 4.165
10 C 0.086 3.914
11 N -0.340 5.340
12 C 0.398 3.602
13 O -0.451 6.451
14 N -0.389 5.389
15 C 0.025 3.975
16 C -0.060 4.060
17 C -0.561 4.561
18 H 0.095 0.905
19 C -0.133 4.133
20 N -0.536 5.536
21 Si 0.710 3.290
22 H -0.202 1.202
23 H -0.213 1.213
24 H -0.191 1.191
25 C -0.144 4.144
26 C -0.084 4.084
27 C -0.116 4.116
28 H 0.047 0.953
29 H 0.086 0.914
30 H 0.093 0.907
31 H 0.086 0.914
32 H 0.086 0.914
33 H 0.045 0.955
34 H 0.097 0.903
35 H 0.093 0.907
36 H 0.091 0.909
37 H 0.098 0.902
38 H 0.138 0.862
39 H 0.239 0.761
40 H 0.226 0.774
41 H 0.081 0.919
42 H 0.082 0.918
43 H 0.040 0.960
44 H 0.036 0.964
45 H 0.075 0.925
46 H 0.158 0.842
47 H 0.144 0.856
Dipole moment (debyes) X Y Z Total
from point charges 13.384 26.325 11.294 31.617
hybrid contribution -0.074 -0.817 2.344 2.483
sum 13.309 25.508 13.638 31.840
Atomic orbital electron populations
1.22462 0.87158 1.02828 1.00398 1.62137 1.08388 1.13503 1.41748
1.22381 1.00708 0.88925 1.00531 1.21196 0.99284 0.89692 0.87897
0.88794 1.22997 1.02246 0.97632 0.96744 1.20924 1.02329 0.91506
0.96466 1.20176 0.98683 0.93758 0.95404 1.20163 1.05564 0.92398
0.98395 1.17335 0.95853 0.83738 0.94451 1.42719 1.59044 1.13980
1.18215 1.16023 0.78658 0.82245 0.83295 1.90935 1.60117 1.64902
1.29131 1.45569 1.61228 1.09568 1.22558 1.21450 0.94971 0.93557
0.87569 1.19806 0.97185 0.90936 0.98039 1.20901 1.36124 0.96438
1.02640 0.90541 1.25002 0.94461 0.97472 0.96392 1.69906 1.39074
1.12238 1.32350 0.86744 0.79290 0.79202 0.83765 1.20248 1.21260
1.19132 1.21186 0.99160 0.96854 0.97210 1.20497 0.97700 0.91914
0.98308 1.20210 1.02590 0.95114 0.93668 0.95288 0.91445 0.90719
0.91411 0.91360 0.95517 0.90335 0.90716 0.90860 0.90175 0.86155
0.76057 0.77353 0.91926 0.91842 0.95958 0.96424 0.92534 0.84241
0.85604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.17 8.90 60.06 0.53 0.71 16
2 N -0.54 -4.65 4.99 -243.30 -1.22 -5.86 16
3 C 0.02 0.15 9.42 60.07 0.57 0.71 16
4 C 0.13 1.08 2.96 -67.82 -0.20 0.88 16
5 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16
6 C -0.16 -1.09 5.55 -25.33 -0.14 -1.23 16
7 C -0.07 -0.55 6.77 -26.85 -0.18 -0.73 16
8 C -0.08 -0.80 6.13 -104.21 -0.64 -1.44 16
9 C -0.14 -1.56 9.96 -39.34 -0.39 -1.96 16
10 C 0.18 2.37 6.28 -83.74 -0.53 1.84 16
11 N -0.69 -8.74 5.35 -14.25 -0.08 -8.81 16
12 C 0.70 11.57 8.31 -86.92 -0.72 10.85 16
13 O -0.57 -11.74 14.00 5.29 0.07 -11.66 16
14 N -0.74 -11.89 5.56 -65.23 -0.36 -12.25 16
15 C 0.15 2.96 5.61 -4.04 -0.02 2.94 16
16 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16
17 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16
18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16
19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16
20 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16
21 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16
22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
24 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16
25 C -0.12 -1.74 8.66 -39.44 -0.34 -2.08 16
26 C -0.07 -0.80 9.75 -39.56 -0.39 -1.18 16
27 C -0.11 -1.22 4.35 -104.14 -0.45 -1.67 16
28 H 0.03 0.23 6.11 -51.93 -0.32 -0.09 16
29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16
30 H 0.07 0.80 6.76 -51.93 -0.35 0.45 16
31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
33 H 0.03 0.15 7.43 -51.93 -0.39 -0.23 16
34 H 0.08 0.58 5.56 -51.93 -0.29 0.29 16
35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16
37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16
38 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16
39 H 0.40 3.67 8.83 -40.82 -0.36 3.31 16
40 H 0.39 5.13 8.49 -40.82 -0.35 4.79 16
41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16
42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16
43 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16
44 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16
45 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16
46 H 0.14 2.24 6.40 -52.49 -0.34 1.91 16
47 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16
LS Contribution 374.04 15.07 5.64 5.64
Total: -1.00 -32.80 374.04 -10.68 -43.47
By element:
Atomic # 1 Polarization: 13.04 SS G_CDS: -7.39 Total: 5.66 kcal
Atomic # 6 Polarization: -2.52 SS G_CDS: -3.45 Total: -5.97 kcal
Atomic # 7 Polarization: -52.47 SS G_CDS: -0.88 Total: -53.35 kcal
Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal
Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal
Total LS contribution 5.64 Total: 5.64 kcal
Total: -32.80 -10.68 -43.47 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000455843263.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.237 kcal
(2) G-P(sol) polarization free energy of solvation -32.796 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal
(6) G-S(sol) free energy of system = (1) + (5) 5.764 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.61 seconds