Wall clock time and date at job start Tue Mar 31 2020 11:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99800 * 2 1 4 4 C 1.46904 * 110.99800 * 123.94991 * 2 1 3 5 5 H 1.09003 * 110.26907 * 182.91588 * 4 2 1 6 6 C 1.54340 * 110.30312 * 304.99233 * 4 2 1 7 7 C 1.54336 * 102.39914 * 145.30234 * 6 4 2 8 8 C 1.51387 * 105.17150 * 333.62417 * 7 6 4 9 9 C 1.38388 * 130.32701 * 197.19922 * 8 7 6 10 10 C 1.38728 * 120.15932 * 180.02562 * 9 8 7 11 11 N 1.39943 * 120.10378 * 179.97438 * 10 9 8 12 12 C 1.34775 * 119.99952 * 147.08212 * 11 10 9 13 13 O 1.21591 * 120.00038 * 355.21291 * 12 11 10 14 14 N 1.34777 * 120.00308 * 174.93320 * 12 11 10 15 15 C 1.46499 * 120.00110 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46977 * 180.02562 * 15 14 12 17 17 C 1.50708 * 109.47148 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99511 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99719 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99624 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00473 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47371 * 90.00238 * 21 19 17 23 23 H 1.48511 * 109.47228 * 209.99877 * 21 19 17 24 24 H 1.48497 * 109.47268 * 329.99744 * 21 19 17 25 25 C 1.38878 * 119.78779 * 0.25586 * 10 9 8 26 26 C 1.37976 * 119.86469 * 359.44596 * 25 10 9 27 27 C 1.38282 * 109.75238 * 17.20447 * 8 7 6 28 28 H 1.09006 * 109.47460 * 302.55718 * 1 2 3 29 29 H 1.09003 * 109.47083 * 62.55610 * 1 2 3 30 30 H 1.09003 * 109.47164 * 182.55569 * 1 2 3 31 31 H 1.09001 * 109.46603 * 183.95214 * 3 2 1 32 32 H 1.08994 * 109.47010 * 303.94695 * 3 2 1 33 33 H 1.08998 * 109.46947 * 63.95486 * 3 2 1 34 34 H 1.08993 * 110.82177 * 27.07316 * 6 4 2 35 35 H 1.09002 * 110.98910 * 263.60306 * 6 4 2 36 36 H 1.08993 * 110.30516 * 214.69988 * 7 6 4 37 37 H 1.09006 * 110.38961 * 92.58800 * 7 6 4 38 38 H 1.08000 * 119.91577 * 0.02562 * 9 8 7 39 39 H 0.97005 * 120.00375 * 327.09233 * 11 10 9 40 40 H 0.97001 * 119.99569 * 359.97438 * 14 12 11 41 41 H 1.08998 * 109.46978 * 299.99948 * 15 14 12 42 42 H 1.08997 * 109.47162 * 60.00237 * 15 14 12 43 43 H 1.08998 * 109.47126 * 299.99737 * 16 15 14 44 44 H 1.09004 * 109.47451 * 59.99982 * 16 15 14 45 45 H 0.97003 * 120.00105 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.07044 * 179.72440 * 25 10 9 47 47 H 1.08001 * 119.84750 * 180.25488 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 3.0841 -0.7153 1.1556 6 6 1.4123 -0.2276 2.4614 7 6 1.2776 -1.5097 3.3099 8 6 1.1232 -2.6337 2.3076 9 6 0.6588 -3.9264 2.4761 10 6 0.6067 -4.7947 1.3953 11 7 0.1374 -6.1019 1.5671 12 6 -0.5305 -6.7146 0.5697 13 8 -0.8015 -6.1033 -0.4458 14 7 -0.8931 -8.0066 0.6956 15 6 -1.6186 -8.6727 -0.3889 16 6 -1.9073 -10.1224 0.0059 17 6 -2.6532 -10.8080 -1.1099 18 1 -2.8971 -10.2639 -2.0104 19 6 -3.0239 -12.1296 -0.9811 20 7 -3.6752 -12.7277 -1.9547 21 14 -2.6025 -13.0704 0.5766 22 1 -3.7072 -12.9232 1.5580 23 1 -2.4171 -14.5077 0.2521 24 1 -1.3482 -12.5286 1.1582 25 6 1.0271 -4.3643 0.1436 26 6 1.4836 -3.0727 -0.0212 27 6 1.5358 -2.2063 1.0589 28 1 -0.3634 0.5530 0.8662 29 1 -0.3633 0.4736 -0.9120 30 1 -0.3633 -1.0267 0.0458 31 1 3.0827 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 0.4379 0.2323 2.2969 35 1 2.0975 0.4778 2.9316 36 1 0.3968 -1.4495 3.9491 37 1 2.1725 -1.6615 3.9134 38 1 0.3363 -4.2601 3.4513 39 1 0.2927 -6.5669 2.4042 40 1 -0.6730 -8.4955 1.5039 41 1 -2.5587 -8.1519 -0.5707 42 1 -1.0130 -8.6563 -1.2950 43 1 -0.9675 -10.6435 0.1880 44 1 -2.5132 -10.1386 0.9120 45 1 -3.9364 -13.6575 -1.8640 46 1 0.9927 -5.0378 -0.6999 47 1 1.8066 -2.7371 -0.9956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455843263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:20 Heat of formation + Delta-G solvation = 5.764016 kcal Electronic energy + Delta-G solvation = -25724.548673 eV Core-core repulsion = 22100.171651 eV Total energy + Delta-G solvation = -3624.377022 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.93144 -39.90547 -37.62255 -35.48874 -34.76295 -33.67753 -32.75336 -30.91320 -30.06017 -28.47895 -27.82158 -27.09504 -24.86102 -23.69093 -22.68073 -21.93811 -20.82429 -20.13590 -20.03882 -18.31662 -17.16451 -16.80941 -16.50511 -16.27313 -15.73894 -14.97760 -14.78053 -14.71680 -14.57726 -14.21301 -14.12811 -13.87370 -13.57138 -13.38399 -13.24118 -12.92605 -12.63064 -12.60180 -12.22838 -12.07051 -11.93205 -11.84979 -11.51795 -11.50236 -11.39298 -11.22255 -10.82859 -10.44826 -10.31325 -10.10000 -10.00026 -9.77837 -9.34858 -8.78821 -8.68543 -8.60061 -8.59231 -7.92335 -6.12337 -4.12665 1.25479 1.36288 2.76325 3.23760 3.26845 3.31360 3.32507 3.63545 3.81390 4.25291 4.26208 4.36099 4.40196 4.62391 4.84638 4.87166 4.95965 4.99159 5.05474 5.17656 5.20378 5.27728 5.35199 5.38377 5.45522 5.49699 5.54235 5.57920 5.73157 5.79045 5.82164 5.93219 6.04305 6.19448 6.23272 6.32807 6.50167 6.52977 6.56810 6.70471 6.76148 6.79195 6.96219 7.06496 7.19808 7.21679 7.64744 8.12011 8.42916 8.72493 8.92146 9.47439 11.00624 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.002103 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.459112 B =13308.366858 C =13864.128009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.536 5.536 3 C 0.023 3.977 4 C 0.128 3.872 5 H 0.094 0.906 6 C -0.157 4.157 7 C -0.075 4.075 8 C -0.079 4.079 9 C -0.144 4.144 10 C 0.182 3.818 11 N -0.692 5.692 12 C 0.697 3.303 13 O -0.574 6.574 14 N -0.736 5.736 15 C 0.147 3.853 16 C -0.022 4.022 17 C -0.523 4.523 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.897 5.897 21 Si 0.883 3.117 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.267 1.267 25 C -0.124 4.124 26 C -0.065 4.065 27 C -0.114 4.114 28 H 0.029 0.971 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.026 0.974 34 H 0.078 0.922 35 H 0.074 0.926 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.120 0.880 39 H 0.404 0.596 40 H 0.393 0.607 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.022 0.978 44 H 0.018 0.982 45 H 0.265 0.735 46 H 0.140 0.860 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.615 26.276 12.804 32.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.125 4.125 4 C 0.019 3.981 5 H 0.112 0.888 6 C -0.196 4.196 7 C -0.112 4.112 8 C -0.080 4.080 9 C -0.165 4.165 10 C 0.086 3.914 11 N -0.340 5.340 12 C 0.398 3.602 13 O -0.451 6.451 14 N -0.389 5.389 15 C 0.025 3.975 16 C -0.060 4.060 17 C -0.561 4.561 18 H 0.095 0.905 19 C -0.133 4.133 20 N -0.536 5.536 21 Si 0.710 3.290 22 H -0.202 1.202 23 H -0.213 1.213 24 H -0.191 1.191 25 C -0.144 4.144 26 C -0.084 4.084 27 C -0.116 4.116 28 H 0.047 0.953 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.045 0.955 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.091 0.909 37 H 0.098 0.902 38 H 0.138 0.862 39 H 0.239 0.761 40 H 0.226 0.774 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.036 0.964 45 H 0.075 0.925 46 H 0.158 0.842 47 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 13.384 26.325 11.294 31.617 hybrid contribution -0.074 -0.817 2.344 2.483 sum 13.309 25.508 13.638 31.840 Atomic orbital electron populations 1.22462 0.87158 1.02828 1.00398 1.62137 1.08388 1.13503 1.41748 1.22381 1.00708 0.88925 1.00531 1.21196 0.99284 0.89692 0.87897 0.88794 1.22997 1.02246 0.97632 0.96744 1.20924 1.02329 0.91506 0.96466 1.20176 0.98683 0.93758 0.95404 1.20163 1.05564 0.92398 0.98395 1.17335 0.95853 0.83738 0.94451 1.42719 1.59044 1.13980 1.18215 1.16023 0.78658 0.82245 0.83295 1.90935 1.60117 1.64902 1.29131 1.45569 1.61228 1.09568 1.22558 1.21450 0.94971 0.93557 0.87569 1.19806 0.97185 0.90936 0.98039 1.20901 1.36124 0.96438 1.02640 0.90541 1.25002 0.94461 0.97472 0.96392 1.69906 1.39074 1.12238 1.32350 0.86744 0.79290 0.79202 0.83765 1.20248 1.21260 1.19132 1.21186 0.99160 0.96854 0.97210 1.20497 0.97700 0.91914 0.98308 1.20210 1.02590 0.95114 0.93668 0.95288 0.91445 0.90719 0.91411 0.91360 0.95517 0.90335 0.90716 0.90860 0.90175 0.86155 0.76057 0.77353 0.91926 0.91842 0.95958 0.96424 0.92534 0.84241 0.85604 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 8.90 60.06 0.53 0.71 16 2 N -0.54 -4.65 4.99 -243.30 -1.22 -5.86 16 3 C 0.02 0.15 9.42 60.07 0.57 0.71 16 4 C 0.13 1.08 2.96 -67.82 -0.20 0.88 16 5 H 0.09 0.75 8.13 -51.93 -0.42 0.33 16 6 C -0.16 -1.09 5.55 -25.33 -0.14 -1.23 16 7 C -0.07 -0.55 6.77 -26.85 -0.18 -0.73 16 8 C -0.08 -0.80 6.13 -104.21 -0.64 -1.44 16 9 C -0.14 -1.56 9.96 -39.34 -0.39 -1.96 16 10 C 0.18 2.37 6.28 -83.74 -0.53 1.84 16 11 N -0.69 -8.74 5.35 -14.25 -0.08 -8.81 16 12 C 0.70 11.57 8.31 -86.92 -0.72 10.85 16 13 O -0.57 -11.74 14.00 5.29 0.07 -11.66 16 14 N -0.74 -11.89 5.56 -65.23 -0.36 -12.25 16 15 C 0.15 2.96 5.61 -4.04 -0.02 2.94 16 16 C -0.02 -0.49 4.16 -27.88 -0.12 -0.61 16 17 C -0.52 -14.53 9.66 -34.44 -0.33 -14.86 16 18 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 19 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 20 N -0.90 -27.20 13.96 55.43 0.77 -26.42 16 21 Si 0.88 20.88 27.47 -169.99 -4.67 16.21 16 22 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 25 C -0.12 -1.74 8.66 -39.44 -0.34 -2.08 16 26 C -0.07 -0.80 9.75 -39.56 -0.39 -1.18 16 27 C -0.11 -1.22 4.35 -104.14 -0.45 -1.67 16 28 H 0.03 0.23 6.11 -51.93 -0.32 -0.09 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.80 6.76 -51.93 -0.35 0.45 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.03 0.15 7.43 -51.93 -0.39 -0.23 16 34 H 0.08 0.58 5.56 -51.93 -0.29 0.29 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.40 3.67 8.83 -40.82 -0.36 3.31 16 40 H 0.39 5.13 8.49 -40.82 -0.35 4.79 16 41 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 42 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 43 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 44 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 45 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 46 H 0.14 2.24 6.40 -52.49 -0.34 1.91 16 47 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 374.04 15.07 5.64 5.64 Total: -1.00 -32.80 374.04 -10.68 -43.47 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -7.39 Total: 5.66 kcal Atomic # 6 Polarization: -2.52 SS G_CDS: -3.45 Total: -5.97 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: -0.88 Total: -53.35 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.67 Total: 16.21 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.80 -10.68 -43.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455843263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.237 kcal (2) G-P(sol) polarization free energy of solvation -32.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds