Wall clock time and date at job start Tue Mar 31 2020 11:42:20
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46895 * 1
3 3 C 1.46905 * 110.99800 * 2 1
4 4 C 1.46904 * 110.99800 * 123.94991 * 2 1 3
5 5 H 1.09003 * 110.26907 * 182.91588 * 4 2 1
6 6 C 1.54340 * 110.30312 * 304.99233 * 4 2 1
7 7 C 1.54336 * 102.39914 * 145.30234 * 6 4 2
8 8 C 1.51387 * 105.17150 * 333.62417 * 7 6 4
9 9 C 1.38388 * 130.32701 * 197.19922 * 8 7 6
10 10 C 1.38728 * 120.15932 * 180.02562 * 9 8 7
11 11 N 1.39943 * 120.10378 * 179.97438 * 10 9 8
12 12 C 1.34775 * 119.99952 * 147.08212 * 11 10 9
13 13 O 1.21591 * 120.00038 * 355.21291 * 12 11 10
14 14 N 1.34777 * 120.00308 * 174.93320 * 12 11 10
15 15 C 1.46499 * 120.00110 * 180.02562 * 14 12 11
16 16 C 1.53000 * 109.46977 * 180.02562 * 15 14 12
17 17 C 1.50708 * 109.47148 * 180.02562 * 16 15 14
18 18 H 1.08001 * 119.99511 * 359.97438 * 17 16 15
19 19 C 1.37868 * 119.99719 * 179.97438 * 17 16 15
20 20 N 1.31520 * 119.99624 * 179.97438 * 19 17 16
21 21 Si 1.86796 * 120.00473 * 0.02562 * 19 17 16
22 22 H 1.48500 * 109.47371 * 90.00238 * 21 19 17
23 23 H 1.48511 * 109.47228 * 209.99877 * 21 19 17
24 24 H 1.48497 * 109.47268 * 329.99744 * 21 19 17
25 25 C 1.38878 * 119.78779 * 0.25586 * 10 9 8
26 26 C 1.37976 * 119.86469 * 359.44596 * 25 10 9
27 27 C 1.38282 * 109.75238 * 17.20447 * 8 7 6
28 28 H 1.09006 * 109.47460 * 302.55718 * 1 2 3
29 29 H 1.09003 * 109.47083 * 62.55610 * 1 2 3
30 30 H 1.09003 * 109.47164 * 182.55569 * 1 2 3
31 31 H 1.09001 * 109.46603 * 183.95214 * 3 2 1
32 32 H 1.08994 * 109.47010 * 303.94695 * 3 2 1
33 33 H 1.08998 * 109.46947 * 63.95486 * 3 2 1
34 34 H 1.08993 * 110.82177 * 27.07316 * 6 4 2
35 35 H 1.09002 * 110.98910 * 263.60306 * 6 4 2
36 36 H 1.08993 * 110.30516 * 214.69988 * 7 6 4
37 37 H 1.09006 * 110.38961 * 92.58800 * 7 6 4
38 38 H 1.08000 * 119.91577 * 0.02562 * 9 8 7
39 39 H 0.97005 * 120.00375 * 327.09233 * 11 10 9
40 40 H 0.97001 * 119.99569 * 359.97438 * 14 12 11
41 41 H 1.08998 * 109.46978 * 299.99948 * 15 14 12
42 42 H 1.08997 * 109.47162 * 60.00237 * 15 14 12
43 43 H 1.08998 * 109.47126 * 299.99737 * 16 15 14
44 44 H 1.09004 * 109.47451 * 59.99982 * 16 15 14
45 45 H 0.97003 * 120.00105 * 180.02562 * 20 19 17
46 46 H 1.08000 * 120.07044 * 179.72440 * 25 10 9
47 47 H 1.08001 * 119.84750 * 180.25488 * 26 25 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9954 1.3715 0.0000
4 6 1.9954 -0.7659 1.1377
5 1 3.0841 -0.7153 1.1556
6 6 1.4123 -0.2276 2.4614
7 6 1.2776 -1.5097 3.3099
8 6 1.1232 -2.6337 2.3076
9 6 0.6588 -3.9264 2.4761
10 6 0.6067 -4.7947 1.3953
11 7 0.1374 -6.1019 1.5671
12 6 -0.5305 -6.7146 0.5697
13 8 -0.8015 -6.1033 -0.4458
14 7 -0.8931 -8.0066 0.6956
15 6 -1.6186 -8.6727 -0.3889
16 6 -1.9073 -10.1224 0.0059
17 6 -2.6532 -10.8080 -1.1099
18 1 -2.8971 -10.2639 -2.0104
19 6 -3.0239 -12.1296 -0.9811
20 7 -3.6752 -12.7277 -1.9547
21 14 -2.6025 -13.0704 0.5766
22 1 -3.7072 -12.9232 1.5580
23 1 -2.4171 -14.5077 0.2521
24 1 -1.3482 -12.5286 1.1582
25 6 1.0271 -4.3643 0.1436
26 6 1.4836 -3.0727 -0.0212
27 6 1.5358 -2.2063 1.0589
28 1 -0.3634 0.5530 0.8662
29 1 -0.3633 0.4736 -0.9120
30 1 -0.3633 -1.0267 0.0458
31 1 3.0827 1.3432 -0.0708
32 1 1.5898 1.9163 -0.8525
33 1 1.7043 1.8724 0.9233
34 1 0.4379 0.2323 2.2969
35 1 2.0975 0.4778 2.9316
36 1 0.3968 -1.4495 3.9491
37 1 2.1725 -1.6615 3.9134
38 1 0.3363 -4.2601 3.4513
39 1 0.2927 -6.5669 2.4042
40 1 -0.6730 -8.4955 1.5039
41 1 -2.5587 -8.1519 -0.5707
42 1 -1.0130 -8.6563 -1.2950
43 1 -0.9675 -10.6435 0.1880
44 1 -2.5132 -10.1386 0.9120
45 1 -3.9364 -13.6575 -1.8640
46 1 0.9927 -5.0378 -0.6999
47 1 1.8066 -2.7371 -0.9956
RHF calculation, no. of doubly occupied orbitals= 60
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000455843263.mol2 47
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:42:20
Heat of formation + Delta-G solvation = -17.380692 kcal
Electronic energy + Delta-G solvation = -25725.552303 eV
Core-core repulsion = 22100.171651 eV
Total energy + Delta-G solvation = -3625.380652 eV
No. of doubly occupied orbitals = 60
Molecular weight
(most abundant/longest-lived isotopes) = 317.184 amu
Computer time = 0.75 seconds
Orbital eigenvalues (eV)
-41.89821 -40.96586 -38.53257 -36.78340 -36.00195 -34.93005 -34.40261 -32.18147
-31.43007 -29.34848 -28.44730 -27.92656 -26.60250 -24.34376 -23.57117 -23.19979
-22.51925 -21.22922 -20.75638 -19.62468 -18.91393 -18.13317 -17.15873 -17.06636
-16.95232 -16.35870 -16.03170 -15.99552 -15.39787 -15.35888 -15.27279 -15.02254
-14.88877 -14.59526 -14.33532 -14.04666 -13.72897 -13.36067 -13.21843 -13.10853
-12.88679 -12.72046 -12.58282 -12.52161 -12.27812 -12.20456 -12.14759 -12.04458
-11.76369 -11.56519 -11.54617 -11.35242 -10.99997 -10.78728 -10.12944 -9.66172
-9.19727 -8.90117 -8.29708 -6.37182 0.31581 0.46014 1.39273 1.42187
1.53156 1.55355 2.00863 2.37045 2.80846 3.05238 3.06720 3.18790
3.59001 3.59260 4.06195 4.08835 4.19311 4.25747 4.31105 4.37171
4.39986 4.43043 4.45196 4.58311 4.64261 4.73073 4.74456 4.78951
4.81022 4.96514 5.00321 5.06633 5.08325 5.08625 5.19655 5.26939
5.31982 5.35445 5.40165 5.42269 5.58153 5.64074 5.67819 5.96776
6.07346 6.11647 6.19552 6.22803 6.70051 6.99062 7.27052 7.45185
8.87036
Molecular weight = 317.18amu
Principal moments of inertia in cm(-1)
A = 0.032954 B = 0.002103 C = 0.002019
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 849.459112 B =13308.366858 C =13864.128009
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.024 3.976
2 N -0.552 5.552
3 C 0.024 3.976
4 C 0.127 3.873
5 H 0.102 0.898
6 C -0.150 4.150
7 C -0.071 4.071
8 C -0.080 4.080
9 C -0.137 4.137
10 C 0.160 3.840
11 N -0.671 5.671
12 C 0.697 3.303
13 O -0.619 6.619
14 N -0.724 5.724
15 C 0.164 3.836
16 C -0.012 4.012
17 C -0.539 4.539
18 H 0.028 0.972
19 C 0.002 3.998
20 N -0.950 5.950
21 Si 0.961 3.039
22 H -0.265 1.265
23 H -0.288 1.288
24 H -0.236 1.236
25 C -0.148 4.148
26 C -0.075 4.075
27 C -0.115 4.115
28 H 0.041 0.959
29 H 0.069 0.931
30 H 0.049 0.951
31 H 0.075 0.925
32 H 0.070 0.930
33 H 0.038 0.962
34 H 0.075 0.925
35 H 0.097 0.903
36 H 0.085 0.915
37 H 0.100 0.900
38 H 0.148 0.852
39 H 0.424 0.576
40 H 0.413 0.587
41 H 0.043 0.957
42 H 0.043 0.957
43 H 0.038 0.962
44 H 0.037 0.963
45 H 0.268 0.732
46 H 0.108 0.892
47 H 0.121 0.879
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 15.240 27.777 17.180 36.041
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.124 4.124
2 N -0.275 5.275
3 C -0.124 4.124
4 C 0.018 3.982
5 H 0.120 0.880
6 C -0.189 4.189
7 C -0.108 4.108
8 C -0.081 4.081
9 C -0.157 4.157
10 C 0.065 3.935
11 N -0.320 5.320
12 C 0.397 3.603
13 O -0.498 6.498
14 N -0.379 5.379
15 C 0.039 3.961
16 C -0.050 4.050
17 C -0.577 4.577
18 H 0.047 0.953
19 C -0.195 4.195
20 N -0.590 5.590
21 Si 0.783 3.217
22 H -0.190 1.190
23 H -0.214 1.214
24 H -0.159 1.159
25 C -0.168 4.168
26 C -0.094 4.094
27 C -0.116 4.116
28 H 0.059 0.941
29 H 0.088 0.912
30 H 0.067 0.933
31 H 0.093 0.907
32 H 0.088 0.912
33 H 0.056 0.944
34 H 0.093 0.907
35 H 0.116 0.884
36 H 0.104 0.896
37 H 0.118 0.882
38 H 0.166 0.834
39 H 0.263 0.737
40 H 0.250 0.750
41 H 0.061 0.939
42 H 0.062 0.938
43 H 0.057 0.943
44 H 0.056 0.944
45 H 0.077 0.923
46 H 0.126 0.874
47 H 0.139 0.861
Dipole moment (debyes) X Y Z Total
from point charges 15.050 27.857 15.735 35.357
hybrid contribution -0.564 -1.138 0.868 1.539
sum 14.486 26.718 16.604 34.632
Atomic orbital electron populations
1.22370 0.87577 1.01335 1.01097 1.62097 1.08164 1.14974 1.42268
1.22414 1.01089 0.87665 1.01220 1.21269 0.99769 0.88231 0.88889
0.87977 1.22978 1.02489 0.97840 0.95546 1.21013 1.03785 0.90077
0.95950 1.20628 0.97190 0.94196 0.96063 1.20406 1.04466 0.92213
0.98643 1.17487 0.97022 0.84168 0.94807 1.42380 1.57797 1.13934
1.17937 1.16120 0.78630 0.82068 0.83434 1.90919 1.61790 1.65887
1.31237 1.45120 1.60866 1.09575 1.22311 1.20934 0.94230 0.92735
0.88157 1.19652 0.97262 0.91437 0.96601 1.21241 1.36780 0.96924
1.02802 0.95315 1.26103 0.94103 0.98624 1.00648 1.70083 1.40825
1.12851 1.35286 0.85517 0.80538 0.77076 0.78590 1.18975 1.21356
1.15867 1.21040 1.01316 0.97384 0.97098 1.20481 0.98221 0.91727
0.98985 1.20527 1.01534 0.96205 0.93349 0.94093 0.91246 0.93258
0.90661 0.91167 0.94374 0.90677 0.88450 0.89640 0.88227 0.83432
0.73710 0.75037 0.93853 0.93828 0.94337 0.94428 0.92344 0.87396
0.86090
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.02 0.41 8.90 127.69 1.14 1.55 16
2 N -0.55 -8.85 4.99 -923.68 -4.61 -13.46 16
3 C 0.02 0.26 9.42 127.69 1.20 1.46 16
4 C 0.13 1.89 2.96 44.84 0.13 2.02 16
5 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16
6 C -0.15 -1.55 5.55 31.50 0.17 -1.38 16
7 C -0.07 -0.77 6.77 30.52 0.21 -0.56 16
8 C -0.08 -1.42 6.13 -19.60 -0.12 -1.55 16
9 C -0.14 -2.66 9.96 22.42 0.22 -2.44 16
10 C 0.16 4.11 6.28 38.12 0.24 4.35 16
11 N -0.67 -16.29 5.35 -317.27 -1.70 -17.99 16
12 C 0.70 23.23 8.31 179.05 1.49 24.72 16
13 O -0.62 -26.52 14.00 -4.00 -0.06 -26.58 16
14 N -0.72 -22.75 5.56 -478.54 -2.66 -25.41 16
15 C 0.16 6.72 5.61 86.38 0.48 7.20 16
16 C -0.01 -0.51 4.16 29.85 0.12 -0.39 16
17 C -0.54 -30.78 9.66 25.60 0.25 -30.53 16
18 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16
19 C 0.00 0.13 5.47 84.65 0.46 0.59 16
20 N -0.95 -59.39 13.96 21.44 0.30 -59.09 16
21 Si 0.96 42.08 27.47 68.60 1.88 43.97 16
22 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16
23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16
24 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16
25 C -0.15 -4.39 8.66 22.36 0.19 -4.19 16
26 C -0.08 -1.92 9.75 22.29 0.22 -1.70 16
27 C -0.11 -2.34 4.35 -19.55 -0.09 -2.42 16
28 H 0.04 0.58 6.11 -2.38 -0.01 0.56 16
29 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16
30 H 0.05 1.07 6.76 -2.39 -0.02 1.06 16
31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16
32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
33 H 0.04 0.33 7.43 -2.39 -0.02 0.31 16
34 H 0.07 0.86 5.56 -2.39 -0.01 0.84 16
35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16
36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16
37 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16
38 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16
39 H 0.42 6.65 8.83 -92.70 -0.82 5.83 16
40 H 0.41 9.69 8.49 -92.71 -0.79 8.90 16
41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16
42 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16
43 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16
44 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16
45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16
46 H 0.11 3.84 6.40 -2.91 -0.02 3.82 16
47 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16
Total: -1.00 -75.54 374.04 -1.19 -76.73
By element:
Atomic # 1 Polarization: 25.78 SS G_CDS: -0.67 Total: 25.11 kcal
Atomic # 6 Polarization: -9.61 SS G_CDS: 6.33 Total: -3.28 kcal
Atomic # 7 Polarization: -107.28 SS G_CDS: -8.67 Total: -115.95 kcal
Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.58 kcal
Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal
Total: -75.54 -1.19 -76.73 kcal
The number of atoms in the molecule is 47
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000455843263.mol2 47
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 59.346 kcal
(2) G-P(sol) polarization free energy of solvation -75.540 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.194 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.727 kcal
(6) G-S(sol) free energy of system = (1) + (5) -17.381 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.75 seconds