Wall clock time and date at job start Tue Mar 31 2020 11:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46905 * 110.99800 * 2 1 4 4 C 1.46904 * 110.99800 * 123.94991 * 2 1 3 5 5 H 1.09003 * 110.26907 * 182.91588 * 4 2 1 6 6 C 1.54340 * 110.30312 * 304.99233 * 4 2 1 7 7 C 1.54336 * 102.39914 * 145.30234 * 6 4 2 8 8 C 1.51387 * 105.17150 * 333.62417 * 7 6 4 9 9 C 1.38388 * 130.32701 * 197.19922 * 8 7 6 10 10 C 1.38728 * 120.15932 * 180.02562 * 9 8 7 11 11 N 1.39943 * 120.10378 * 179.97438 * 10 9 8 12 12 C 1.34775 * 119.99952 * 147.08212 * 11 10 9 13 13 O 1.21591 * 120.00038 * 355.21291 * 12 11 10 14 14 N 1.34777 * 120.00308 * 174.93320 * 12 11 10 15 15 C 1.46499 * 120.00110 * 180.02562 * 14 12 11 16 16 C 1.53000 * 109.46977 * 180.02562 * 15 14 12 17 17 C 1.50708 * 109.47148 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99511 * 359.97438 * 17 16 15 19 19 C 1.37868 * 119.99719 * 179.97438 * 17 16 15 20 20 N 1.31520 * 119.99624 * 179.97438 * 19 17 16 21 21 Si 1.86796 * 120.00473 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47371 * 90.00238 * 21 19 17 23 23 H 1.48511 * 109.47228 * 209.99877 * 21 19 17 24 24 H 1.48497 * 109.47268 * 329.99744 * 21 19 17 25 25 C 1.38878 * 119.78779 * 0.25586 * 10 9 8 26 26 C 1.37976 * 119.86469 * 359.44596 * 25 10 9 27 27 C 1.38282 * 109.75238 * 17.20447 * 8 7 6 28 28 H 1.09006 * 109.47460 * 302.55718 * 1 2 3 29 29 H 1.09003 * 109.47083 * 62.55610 * 1 2 3 30 30 H 1.09003 * 109.47164 * 182.55569 * 1 2 3 31 31 H 1.09001 * 109.46603 * 183.95214 * 3 2 1 32 32 H 1.08994 * 109.47010 * 303.94695 * 3 2 1 33 33 H 1.08998 * 109.46947 * 63.95486 * 3 2 1 34 34 H 1.08993 * 110.82177 * 27.07316 * 6 4 2 35 35 H 1.09002 * 110.98910 * 263.60306 * 6 4 2 36 36 H 1.08993 * 110.30516 * 214.69988 * 7 6 4 37 37 H 1.09006 * 110.38961 * 92.58800 * 7 6 4 38 38 H 1.08000 * 119.91577 * 0.02562 * 9 8 7 39 39 H 0.97005 * 120.00375 * 327.09233 * 11 10 9 40 40 H 0.97001 * 119.99569 * 359.97438 * 14 12 11 41 41 H 1.08998 * 109.46978 * 299.99948 * 15 14 12 42 42 H 1.08997 * 109.47162 * 60.00237 * 15 14 12 43 43 H 1.08998 * 109.47126 * 299.99737 * 16 15 14 44 44 H 1.09004 * 109.47451 * 59.99982 * 16 15 14 45 45 H 0.97003 * 120.00105 * 180.02562 * 20 19 17 46 46 H 1.08000 * 120.07044 * 179.72440 * 25 10 9 47 47 H 1.08001 * 119.84750 * 180.25488 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 3.0841 -0.7153 1.1556 6 6 1.4123 -0.2276 2.4614 7 6 1.2776 -1.5097 3.3099 8 6 1.1232 -2.6337 2.3076 9 6 0.6588 -3.9264 2.4761 10 6 0.6067 -4.7947 1.3953 11 7 0.1374 -6.1019 1.5671 12 6 -0.5305 -6.7146 0.5697 13 8 -0.8015 -6.1033 -0.4458 14 7 -0.8931 -8.0066 0.6956 15 6 -1.6186 -8.6727 -0.3889 16 6 -1.9073 -10.1224 0.0059 17 6 -2.6532 -10.8080 -1.1099 18 1 -2.8971 -10.2639 -2.0104 19 6 -3.0239 -12.1296 -0.9811 20 7 -3.6752 -12.7277 -1.9547 21 14 -2.6025 -13.0704 0.5766 22 1 -3.7072 -12.9232 1.5580 23 1 -2.4171 -14.5077 0.2521 24 1 -1.3482 -12.5286 1.1582 25 6 1.0271 -4.3643 0.1436 26 6 1.4836 -3.0727 -0.0212 27 6 1.5358 -2.2063 1.0589 28 1 -0.3634 0.5530 0.8662 29 1 -0.3633 0.4736 -0.9120 30 1 -0.3633 -1.0267 0.0458 31 1 3.0827 1.3432 -0.0708 32 1 1.5898 1.9163 -0.8525 33 1 1.7043 1.8724 0.9233 34 1 0.4379 0.2323 2.2969 35 1 2.0975 0.4778 2.9316 36 1 0.3968 -1.4495 3.9491 37 1 2.1725 -1.6615 3.9134 38 1 0.3363 -4.2601 3.4513 39 1 0.2927 -6.5669 2.4042 40 1 -0.6730 -8.4955 1.5039 41 1 -2.5587 -8.1519 -0.5707 42 1 -1.0130 -8.6563 -1.2950 43 1 -0.9675 -10.6435 0.1880 44 1 -2.5132 -10.1386 0.9120 45 1 -3.9364 -13.6575 -1.8640 46 1 0.9927 -5.0378 -0.6999 47 1 1.8066 -2.7371 -0.9956 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455843263.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:20 Heat of formation + Delta-G solvation = -17.380692 kcal Electronic energy + Delta-G solvation = -25725.552303 eV Core-core repulsion = 22100.171651 eV Total energy + Delta-G solvation = -3625.380652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.89821 -40.96586 -38.53257 -36.78340 -36.00195 -34.93005 -34.40261 -32.18147 -31.43007 -29.34848 -28.44730 -27.92656 -26.60250 -24.34376 -23.57117 -23.19979 -22.51925 -21.22922 -20.75638 -19.62468 -18.91393 -18.13317 -17.15873 -17.06636 -16.95232 -16.35870 -16.03170 -15.99552 -15.39787 -15.35888 -15.27279 -15.02254 -14.88877 -14.59526 -14.33532 -14.04666 -13.72897 -13.36067 -13.21843 -13.10853 -12.88679 -12.72046 -12.58282 -12.52161 -12.27812 -12.20456 -12.14759 -12.04458 -11.76369 -11.56519 -11.54617 -11.35242 -10.99997 -10.78728 -10.12944 -9.66172 -9.19727 -8.90117 -8.29708 -6.37182 0.31581 0.46014 1.39273 1.42187 1.53156 1.55355 2.00863 2.37045 2.80846 3.05238 3.06720 3.18790 3.59001 3.59260 4.06195 4.08835 4.19311 4.25747 4.31105 4.37171 4.39986 4.43043 4.45196 4.58311 4.64261 4.73073 4.74456 4.78951 4.81022 4.96514 5.00321 5.06633 5.08325 5.08625 5.19655 5.26939 5.31982 5.35445 5.40165 5.42269 5.58153 5.64074 5.67819 5.96776 6.07346 6.11647 6.19552 6.22803 6.70051 6.99062 7.27052 7.45185 8.87036 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.032954 B = 0.002103 C = 0.002019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.459112 B =13308.366858 C =13864.128009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.552 5.552 3 C 0.024 3.976 4 C 0.127 3.873 5 H 0.102 0.898 6 C -0.150 4.150 7 C -0.071 4.071 8 C -0.080 4.080 9 C -0.137 4.137 10 C 0.160 3.840 11 N -0.671 5.671 12 C 0.697 3.303 13 O -0.619 6.619 14 N -0.724 5.724 15 C 0.164 3.836 16 C -0.012 4.012 17 C -0.539 4.539 18 H 0.028 0.972 19 C 0.002 3.998 20 N -0.950 5.950 21 Si 0.961 3.039 22 H -0.265 1.265 23 H -0.288 1.288 24 H -0.236 1.236 25 C -0.148 4.148 26 C -0.075 4.075 27 C -0.115 4.115 28 H 0.041 0.959 29 H 0.069 0.931 30 H 0.049 0.951 31 H 0.075 0.925 32 H 0.070 0.930 33 H 0.038 0.962 34 H 0.075 0.925 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.148 0.852 39 H 0.424 0.576 40 H 0.413 0.587 41 H 0.043 0.957 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.037 0.963 45 H 0.268 0.732 46 H 0.108 0.892 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.240 27.777 17.180 36.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.275 5.275 3 C -0.124 4.124 4 C 0.018 3.982 5 H 0.120 0.880 6 C -0.189 4.189 7 C -0.108 4.108 8 C -0.081 4.081 9 C -0.157 4.157 10 C 0.065 3.935 11 N -0.320 5.320 12 C 0.397 3.603 13 O -0.498 6.498 14 N -0.379 5.379 15 C 0.039 3.961 16 C -0.050 4.050 17 C -0.577 4.577 18 H 0.047 0.953 19 C -0.195 4.195 20 N -0.590 5.590 21 Si 0.783 3.217 22 H -0.190 1.190 23 H -0.214 1.214 24 H -0.159 1.159 25 C -0.168 4.168 26 C -0.094 4.094 27 C -0.116 4.116 28 H 0.059 0.941 29 H 0.088 0.912 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.056 0.944 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.104 0.896 37 H 0.118 0.882 38 H 0.166 0.834 39 H 0.263 0.737 40 H 0.250 0.750 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.077 0.923 46 H 0.126 0.874 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 15.050 27.857 15.735 35.357 hybrid contribution -0.564 -1.138 0.868 1.539 sum 14.486 26.718 16.604 34.632 Atomic orbital electron populations 1.22370 0.87577 1.01335 1.01097 1.62097 1.08164 1.14974 1.42268 1.22414 1.01089 0.87665 1.01220 1.21269 0.99769 0.88231 0.88889 0.87977 1.22978 1.02489 0.97840 0.95546 1.21013 1.03785 0.90077 0.95950 1.20628 0.97190 0.94196 0.96063 1.20406 1.04466 0.92213 0.98643 1.17487 0.97022 0.84168 0.94807 1.42380 1.57797 1.13934 1.17937 1.16120 0.78630 0.82068 0.83434 1.90919 1.61790 1.65887 1.31237 1.45120 1.60866 1.09575 1.22311 1.20934 0.94230 0.92735 0.88157 1.19652 0.97262 0.91437 0.96601 1.21241 1.36780 0.96924 1.02802 0.95315 1.26103 0.94103 0.98624 1.00648 1.70083 1.40825 1.12851 1.35286 0.85517 0.80538 0.77076 0.78590 1.18975 1.21356 1.15867 1.21040 1.01316 0.97384 0.97098 1.20481 0.98221 0.91727 0.98985 1.20527 1.01534 0.96205 0.93349 0.94093 0.91246 0.93258 0.90661 0.91167 0.94374 0.90677 0.88450 0.89640 0.88227 0.83432 0.73710 0.75037 0.93853 0.93828 0.94337 0.94428 0.92344 0.87396 0.86090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 8.90 127.69 1.14 1.55 16 2 N -0.55 -8.85 4.99 -923.68 -4.61 -13.46 16 3 C 0.02 0.26 9.42 127.69 1.20 1.46 16 4 C 0.13 1.89 2.96 44.84 0.13 2.02 16 5 H 0.10 1.37 8.13 -2.39 -0.02 1.35 16 6 C -0.15 -1.55 5.55 31.50 0.17 -1.38 16 7 C -0.07 -0.77 6.77 30.52 0.21 -0.56 16 8 C -0.08 -1.42 6.13 -19.60 -0.12 -1.55 16 9 C -0.14 -2.66 9.96 22.42 0.22 -2.44 16 10 C 0.16 4.11 6.28 38.12 0.24 4.35 16 11 N -0.67 -16.29 5.35 -317.27 -1.70 -17.99 16 12 C 0.70 23.23 8.31 179.05 1.49 24.72 16 13 O -0.62 -26.52 14.00 -4.00 -0.06 -26.58 16 14 N -0.72 -22.75 5.56 -478.54 -2.66 -25.41 16 15 C 0.16 6.72 5.61 86.38 0.48 7.20 16 16 C -0.01 -0.51 4.16 29.85 0.12 -0.39 16 17 C -0.54 -30.78 9.66 25.60 0.25 -30.53 16 18 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 19 C 0.00 0.13 5.47 84.65 0.46 0.59 16 20 N -0.95 -59.39 13.96 21.44 0.30 -59.09 16 21 Si 0.96 42.08 27.47 68.60 1.88 43.97 16 22 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 23 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 24 H -0.24 -9.10 6.54 99.48 0.65 -8.45 16 25 C -0.15 -4.39 8.66 22.36 0.19 -4.19 16 26 C -0.08 -1.92 9.75 22.29 0.22 -1.70 16 27 C -0.11 -2.34 4.35 -19.55 -0.09 -2.42 16 28 H 0.04 0.58 6.11 -2.38 -0.01 0.56 16 29 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.05 1.07 6.76 -2.39 -0.02 1.06 16 31 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.04 0.33 7.43 -2.39 -0.02 0.31 16 34 H 0.07 0.86 5.56 -2.39 -0.01 0.84 16 35 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 0.77 8.14 -2.38 -0.02 0.75 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.00 16 39 H 0.42 6.65 8.83 -92.70 -0.82 5.83 16 40 H 0.41 9.69 8.49 -92.71 -0.79 8.90 16 41 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.04 1.59 7.20 -2.39 -0.02 1.57 16 44 H 0.04 1.53 7.57 -2.38 -0.02 1.51 16 45 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 46 H 0.11 3.84 6.40 -2.91 -0.02 3.82 16 47 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -75.54 374.04 -1.19 -76.73 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -0.67 Total: 25.11 kcal Atomic # 6 Polarization: -9.61 SS G_CDS: 6.33 Total: -3.28 kcal Atomic # 7 Polarization: -107.28 SS G_CDS: -8.67 Total: -115.95 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.06 Total: -26.58 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Total: -75.54 -1.19 -76.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455843263.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.346 kcal (2) G-P(sol) polarization free energy of solvation -75.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds