Wall clock time and date at job start Tue Mar 31 2020 11:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99395 * 2 1 4 4 C 1.52998 * 109.47456 * 269.99923 * 3 2 1 5 5 N 1.46908 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.48531 * 110.99695 * 52.60053 * 5 4 3 7 7 C 1.54940 * 103.22093 * 159.72081 * 6 5 4 8 8 C 1.54588 * 102.92674 * 322.58640 * 7 6 5 9 9 C 1.47900 * 110.99811 * 170.00139 * 5 4 3 10 10 C 1.34768 * 120.00538 * 179.97438 * 2 1 3 11 11 O 1.21582 * 120.00420 * 180.02562 * 10 2 1 12 12 N 1.34775 * 119.99872 * 0.28052 * 10 2 1 13 13 C 1.39953 * 120.00255 * 174.53959 * 12 10 2 14 14 C 1.39286 * 119.95031 * 145.79086 * 13 12 10 15 15 C 1.38491 * 120.42954 * 179.97438 * 14 13 12 16 16 C 1.37676 * 120.32323 * 359.97174 * 15 14 13 17 17 C 1.40740 * 119.88173 * 0.02610 * 16 15 14 18 18 C 1.41413 * 120.21124 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00031 * 205.17434 * 18 17 16 20 20 C 1.39928 * 120.00062 * 25.16729 * 18 17 16 21 21 N 1.30837 * 119.99825 * 16.79013 * 20 18 17 22 22 Si 1.86802 * 120.00386 * 196.78605 * 20 18 17 23 23 H 1.48491 * 109.46880 * 60.00277 * 22 20 18 24 24 H 1.48502 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46800 * 300.00107 * 22 20 18 26 26 C 1.38238 * 119.94346 * 325.50994 * 13 12 10 27 27 H 1.08997 * 109.47601 * 269.99407 * 1 2 3 28 28 H 1.09004 * 109.47729 * 30.00125 * 1 2 3 29 29 H 1.09007 * 109.46924 * 149.99676 * 1 2 3 30 30 H 1.09007 * 109.47487 * 30.00299 * 3 2 1 31 31 H 1.09001 * 109.47176 * 149.99869 * 3 2 1 32 32 H 1.08995 * 109.47019 * 300.00235 * 4 3 2 33 33 H 1.09002 * 109.47180 * 60.00331 * 4 3 2 34 34 H 1.08996 * 110.67229 * 278.15450 * 6 5 4 35 35 H 1.08996 * 110.66650 * 41.29230 * 6 5 4 36 36 H 1.09004 * 110.72228 * 204.22930 * 7 6 5 37 37 H 1.09000 * 110.72571 * 80.95050 * 7 6 5 38 38 H 1.08997 * 110.31132 * 263.04333 * 8 7 6 39 39 H 1.08998 * 110.39810 * 140.91480 * 8 7 6 40 40 H 1.09002 * 109.91658 * 333.50302 * 9 5 4 41 41 H 1.08996 * 109.91612 * 94.60574 * 9 5 4 42 42 H 0.97009 * 120.00152 * 354.53263 * 12 10 2 43 43 H 1.08000 * 119.78584 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.83517 * 179.97438 * 15 14 13 45 45 H 1.08000 * 120.06312 * 180.02562 * 16 15 14 46 46 H 0.96993 * 119.99897 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.16101 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1973 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1873 2.9826 -1.4424 6 6 4.4075 2.8922 -0.6003 7 6 5.2855 4.0571 -1.1226 8 6 5.0125 4.0407 -2.6441 9 6 3.6599 3.3216 -2.8022 10 6 2.1390 -1.1671 0.0005 11 8 3.3548 -1.1670 0.0010 12 7 1.4652 -2.3343 -0.0047 13 6 2.1607 -3.5433 -0.1195 14 6 1.6968 -4.6780 0.5419 15 6 2.3769 -5.8796 0.4348 16 6 3.5199 -5.9657 -0.3279 17 6 4.0005 -4.8276 -1.0019 18 6 5.1741 -4.9081 -1.7868 19 1 5.7669 -4.0229 -1.9641 20 6 5.5674 -6.1346 -2.3335 21 7 4.7123 -7.1221 -2.4075 22 14 7.3132 -6.3621 -2.9579 23 1 8.2699 -6.1429 -1.8435 24 1 7.4745 -7.7409 -3.4854 25 1 7.5828 -5.3833 -4.0416 26 6 3.3038 -3.6109 -0.8938 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3635 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6082 2.0284 0.5139 31 1 3.1498 1.1386 0.5139 32 1 3.0415 0.9510 -1.9563 33 1 1.4999 1.8409 -1.9563 34 1 4.1609 3.0379 0.4513 35 1 4.9084 1.9358 -0.7502 36 1 6.3393 3.8676 -0.9178 37 1 4.9706 5.0041 -0.6843 38 1 5.7967 3.4899 -3.1633 39 1 4.9473 5.0583 -3.0293 40 1 3.7894 2.4116 -3.3880 41 1 2.9415 3.9791 -3.2918 42 1 0.4981 -2.3365 0.0713 43 1 0.8008 -4.6203 1.1422 44 1 2.0089 -6.7533 0.9521 45 1 4.0468 -6.9050 -0.4089 46 1 4.9848 -7.9722 -2.7869 47 1 3.6616 -2.7329 -1.4110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455910493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:57 Heat of formation + Delta-G solvation = 6.679873 kcal Electronic energy + Delta-G solvation = -26468.823054 eV Core-core repulsion = 22844.485746 eV Total energy + Delta-G solvation = -3624.337308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.21483 -38.98053 -37.42863 -35.52423 -34.48030 -33.19079 -32.40026 -29.77928 -29.26664 -28.55495 -27.71491 -26.16445 -25.24423 -23.42760 -21.47603 -20.97328 -20.87446 -20.49980 -19.19213 -18.06772 -17.34081 -16.44560 -16.24047 -15.63350 -15.40783 -15.01067 -14.71121 -14.54744 -14.30226 -14.07265 -13.57883 -13.43133 -12.99011 -12.95678 -12.81451 -12.77918 -12.31207 -12.15276 -11.96305 -11.61798 -11.59337 -11.52555 -11.25959 -11.17028 -11.07888 -10.92327 -10.85839 -10.69559 -10.46352 -10.13884 -9.68136 -9.44774 -9.07121 -8.97885 -8.58742 -8.56398 -7.40448 -6.85248 -6.66849 -4.29953 2.70442 2.84846 3.01090 3.10235 3.14205 3.25732 3.69337 3.93714 3.98925 4.29561 4.50486 4.55018 4.69154 4.81673 4.98782 4.99861 5.06429 5.19911 5.34525 5.40341 5.46240 5.53341 5.54695 5.64885 5.68532 5.74603 5.78076 5.83103 5.94889 5.95455 6.04520 6.27269 6.43206 6.43911 6.72633 6.81412 6.83535 6.94239 7.08201 7.13041 7.27729 7.34762 7.70906 7.84061 8.03336 8.14413 8.28282 8.42724 8.70018 8.93238 9.01116 9.07262 10.25396 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003511 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.747202 B = 7972.669102 C =10017.683400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.637 5.637 3 C 0.137 3.863 4 C 0.030 3.970 5 N -0.516 5.516 6 C 0.028 3.972 7 C -0.123 4.123 8 C -0.131 4.131 9 C 0.035 3.965 10 C 0.700 3.300 11 O -0.564 6.564 12 N -0.680 5.680 13 C 0.168 3.832 14 C -0.263 4.263 15 C -0.092 4.092 16 C -0.174 4.174 17 C 0.121 3.879 18 C -0.459 4.459 19 H 0.077 0.923 20 C 0.076 3.924 21 N -0.796 5.796 22 Si 0.908 3.092 23 H -0.263 1.263 24 H -0.279 1.279 25 H -0.266 1.266 26 C -0.209 4.209 27 H 0.054 0.946 28 H 0.073 0.927 29 H 0.067 0.933 30 H 0.080 0.920 31 H 0.086 0.914 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.054 0.946 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.046 0.954 41 H 0.077 0.923 42 H 0.394 0.606 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.119 0.881 46 H 0.280 0.720 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.009 17.050 1.501 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.377 5.377 3 C 0.013 3.987 4 C -0.100 4.100 5 N -0.241 5.241 6 C -0.100 4.100 7 C -0.162 4.162 8 C -0.169 4.169 9 C -0.093 4.093 10 C 0.401 3.599 11 O -0.439 6.439 12 N -0.328 5.328 13 C 0.076 3.924 14 C -0.285 4.285 15 C -0.111 4.111 16 C -0.194 4.194 17 C 0.118 3.882 18 C -0.489 4.489 19 H 0.095 0.905 20 C -0.141 4.141 21 N -0.422 5.422 22 Si 0.732 3.268 23 H -0.188 1.188 24 H -0.204 1.204 25 H -0.191 1.191 26 C -0.231 4.231 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.085 0.915 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.063 0.937 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.089 0.911 40 H 0.064 0.936 41 H 0.095 0.905 42 H 0.229 0.771 43 H 0.106 0.894 44 H 0.109 0.891 45 H 0.137 0.863 46 H 0.091 0.909 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -5.516 17.219 1.587 18.151 hybrid contribution 0.528 -0.860 -0.695 1.225 sum -4.989 16.359 0.892 17.126 Atomic orbital electron populations 1.21714 0.80139 1.02997 1.01581 1.47014 1.06177 1.04961 1.79517 1.21252 0.98068 0.83432 0.95928 1.22702 0.99054 0.90045 0.98188 1.64810 1.20738 1.29964 1.08542 1.23312 0.90213 0.98111 0.98332 1.22475 0.99573 0.98948 0.95154 1.22390 0.96740 1.00881 0.96929 1.22866 0.96160 0.99555 0.90718 1.15921 0.85518 0.80229 0.78184 1.90962 1.11221 1.85607 1.56109 1.42742 1.09428 1.04183 1.76452 1.17243 0.94734 0.82710 0.97694 1.20006 1.04799 0.93635 1.10045 1.20441 0.96259 0.95213 0.99151 1.21334 0.97990 0.99992 1.00036 1.17475 0.91218 0.90223 0.89276 1.19540 1.07150 0.94822 1.27384 0.90512 1.25885 0.98700 0.95322 0.94158 1.69823 1.34706 1.03766 1.33921 0.86379 0.82731 0.77913 0.79750 1.18805 1.20364 1.19081 1.20974 0.97844 0.99046 1.05220 0.92736 0.90864 0.91460 0.90118 0.89616 0.93651 0.90784 0.89903 0.92763 0.91034 0.90882 0.91460 0.91128 0.93577 0.90463 0.77098 0.89407 0.89065 0.86339 0.90942 0.87705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.75 10.16 59.85 0.61 1.36 16 2 N -0.64 -8.84 2.87 -187.35 -0.54 -9.37 16 3 C 0.14 1.72 5.07 -4.04 -0.02 1.70 16 4 C 0.03 0.37 5.35 -3.82 -0.02 0.35 16 5 N -0.52 -5.90 5.40 -230.45 -1.24 -7.14 16 6 C 0.03 0.31 5.10 -1.90 -0.01 0.30 16 7 C -0.12 -1.14 7.06 -24.87 -0.18 -1.31 16 8 C -0.13 -1.19 6.93 -25.37 -0.18 -1.37 16 9 C 0.04 0.37 6.70 -2.75 -0.02 0.35 16 10 C 0.70 13.27 8.01 -86.93 -0.70 12.58 16 11 O -0.56 -13.20 13.68 5.29 0.07 -13.12 16 12 N -0.68 -12.76 5.17 -14.27 -0.07 -12.84 16 13 C 0.17 3.93 6.25 -83.76 -0.52 3.41 16 14 C -0.26 -5.93 9.97 -39.10 -0.39 -6.32 16 15 C -0.09 -2.18 10.02 -39.69 -0.40 -2.58 16 16 C -0.17 -4.65 8.69 -38.84 -0.34 -4.98 16 17 C 0.12 3.40 5.57 -106.85 -0.59 2.81 16 18 C -0.46 -12.86 9.05 -37.74 -0.34 -13.20 16 19 H 0.08 2.12 7.90 -52.49 -0.41 1.71 16 20 C 0.08 1.99 5.16 -17.34 -0.09 1.90 16 21 N -0.80 -21.03 10.94 55.55 0.61 -20.43 16 22 Si 0.91 19.39 29.59 -169.99 -5.03 14.36 16 23 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 24 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.21 -5.58 8.39 -38.68 -0.32 -5.90 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.54 8.07 -51.93 -0.42 0.12 16 29 H 0.07 0.61 6.44 -51.92 -0.33 0.27 16 30 H 0.08 0.82 8.07 -51.92 -0.42 0.40 16 31 H 0.09 1.25 6.07 -51.93 -0.32 0.93 16 32 H 0.05 0.71 7.81 -51.93 -0.41 0.30 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 34 H 0.08 0.86 7.66 -51.93 -0.40 0.46 16 35 H 0.05 0.73 8.00 -51.93 -0.42 0.31 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.05 0.53 7.57 -51.93 -0.39 0.13 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.39 5.83 6.63 -40.82 -0.27 5.56 16 43 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 44 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 45 H 0.12 3.24 6.16 -52.49 -0.32 2.92 16 46 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 47 H 0.10 2.91 6.48 -52.49 -0.34 2.57 16 LS Contribution 374.70 15.07 5.65 5.65 Total: -1.00 -31.82 374.70 -11.45 -43.28 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -7.39 Total: 10.52 kcal Atomic # 6 Polarization: -7.40 SS G_CDS: -3.51 Total: -10.91 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -1.25 Total: -49.77 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.07 Total: -13.12 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.03 Total: 14.36 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.82 -11.45 -43.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455910493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.955 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds