Wall clock time and date at job start Tue Mar 31 2020 11:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46497 * 119.99395 * 2 1 4 4 C 1.52998 * 109.47456 * 269.99923 * 3 2 1 5 5 N 1.46908 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.48531 * 110.99695 * 52.60053 * 5 4 3 7 7 C 1.54940 * 103.22093 * 159.72081 * 6 5 4 8 8 C 1.54588 * 102.92674 * 322.58640 * 7 6 5 9 9 C 1.47900 * 110.99811 * 170.00139 * 5 4 3 10 10 C 1.34768 * 120.00538 * 179.97438 * 2 1 3 11 11 O 1.21582 * 120.00420 * 180.02562 * 10 2 1 12 12 N 1.34775 * 119.99872 * 0.28052 * 10 2 1 13 13 C 1.39953 * 120.00255 * 174.53959 * 12 10 2 14 14 C 1.39286 * 119.95031 * 145.79086 * 13 12 10 15 15 C 1.38491 * 120.42954 * 179.97438 * 14 13 12 16 16 C 1.37676 * 120.32323 * 359.97174 * 15 14 13 17 17 C 1.40740 * 119.88173 * 0.02610 * 16 15 14 18 18 C 1.41413 * 120.21124 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00031 * 205.17434 * 18 17 16 20 20 C 1.39928 * 120.00062 * 25.16729 * 18 17 16 21 21 N 1.30837 * 119.99825 * 16.79013 * 20 18 17 22 22 Si 1.86802 * 120.00386 * 196.78605 * 20 18 17 23 23 H 1.48491 * 109.46880 * 60.00277 * 22 20 18 24 24 H 1.48502 * 109.47038 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46800 * 300.00107 * 22 20 18 26 26 C 1.38238 * 119.94346 * 325.50994 * 13 12 10 27 27 H 1.08997 * 109.47601 * 269.99407 * 1 2 3 28 28 H 1.09004 * 109.47729 * 30.00125 * 1 2 3 29 29 H 1.09007 * 109.46924 * 149.99676 * 1 2 3 30 30 H 1.09007 * 109.47487 * 30.00299 * 3 2 1 31 31 H 1.09001 * 109.47176 * 149.99869 * 3 2 1 32 32 H 1.08995 * 109.47019 * 300.00235 * 4 3 2 33 33 H 1.09002 * 109.47180 * 60.00331 * 4 3 2 34 34 H 1.08996 * 110.67229 * 278.15450 * 6 5 4 35 35 H 1.08996 * 110.66650 * 41.29230 * 6 5 4 36 36 H 1.09004 * 110.72228 * 204.22930 * 7 6 5 37 37 H 1.09000 * 110.72571 * 80.95050 * 7 6 5 38 38 H 1.08997 * 110.31132 * 263.04333 * 8 7 6 39 39 H 1.08998 * 110.39810 * 140.91480 * 8 7 6 40 40 H 1.09002 * 109.91658 * 333.50302 * 9 5 4 41 41 H 1.08996 * 109.91612 * 94.60574 * 9 5 4 42 42 H 0.97009 * 120.00152 * 354.53263 * 12 10 2 43 43 H 1.08000 * 119.78584 * 359.97438 * 14 13 12 44 44 H 1.08000 * 119.83517 * 179.97438 * 15 14 13 45 45 H 1.08000 * 120.06312 * 180.02562 * 16 15 14 46 46 H 0.96993 * 119.99897 * 179.97438 * 21 20 18 47 47 H 1.07994 * 120.16101 * 359.97438 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1973 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1873 2.9826 -1.4424 6 6 4.4075 2.8922 -0.6003 7 6 5.2855 4.0571 -1.1226 8 6 5.0125 4.0407 -2.6441 9 6 3.6599 3.3216 -2.8022 10 6 2.1390 -1.1671 0.0005 11 8 3.3548 -1.1670 0.0010 12 7 1.4652 -2.3343 -0.0047 13 6 2.1607 -3.5433 -0.1195 14 6 1.6968 -4.6780 0.5419 15 6 2.3769 -5.8796 0.4348 16 6 3.5199 -5.9657 -0.3279 17 6 4.0005 -4.8276 -1.0019 18 6 5.1741 -4.9081 -1.7868 19 1 5.7669 -4.0229 -1.9641 20 6 5.5674 -6.1346 -2.3335 21 7 4.7123 -7.1221 -2.4075 22 14 7.3132 -6.3621 -2.9579 23 1 8.2699 -6.1429 -1.8435 24 1 7.4745 -7.7409 -3.4854 25 1 7.5828 -5.3833 -4.0416 26 6 3.3038 -3.6109 -0.8938 27 1 -0.3634 -0.0001 1.0276 28 1 -0.3635 0.8900 -0.5138 29 1 -0.3633 -0.8900 -0.5139 30 1 1.6082 2.0284 0.5139 31 1 3.1498 1.1386 0.5139 32 1 3.0415 0.9510 -1.9563 33 1 1.4999 1.8409 -1.9563 34 1 4.1609 3.0379 0.4513 35 1 4.9084 1.9358 -0.7502 36 1 6.3393 3.8676 -0.9178 37 1 4.9706 5.0041 -0.6843 38 1 5.7967 3.4899 -3.1633 39 1 4.9473 5.0583 -3.0293 40 1 3.7894 2.4116 -3.3880 41 1 2.9415 3.9791 -3.2918 42 1 0.4981 -2.3365 0.0713 43 1 0.8008 -4.6203 1.1422 44 1 2.0089 -6.7533 0.9521 45 1 4.0468 -6.9050 -0.4089 46 1 4.9848 -7.9722 -2.7869 47 1 3.6616 -2.7329 -1.4110 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455910493.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:46:56 Heat of formation + Delta-G solvation = -13.643594 kcal Electronic energy + Delta-G solvation = -26469.704346 eV Core-core repulsion = 22844.485746 eV Total energy + Delta-G solvation = -3625.218600 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.67020 -39.99135 -39.17419 -36.85695 -36.24993 -34.92848 -33.48995 -31.76094 -30.34491 -29.85236 -28.90984 -27.37599 -27.14346 -24.58906 -23.03468 -22.71669 -21.79599 -21.72242 -20.68679 -19.69971 -18.89576 -17.70228 -17.26917 -17.23088 -16.89732 -16.50076 -16.27666 -16.02350 -15.49282 -15.29595 -14.93758 -14.69999 -14.65680 -14.35243 -13.98125 -13.81095 -13.64452 -13.54053 -13.16902 -13.02846 -12.95046 -12.91575 -12.77222 -12.52552 -12.33177 -12.19605 -12.11392 -11.97927 -11.86515 -11.57720 -11.46632 -11.24754 -10.98417 -10.80630 -9.77136 -9.57167 -9.40358 -8.73955 -8.59740 -6.38670 0.91273 1.01302 1.33675 1.45023 1.48658 1.58322 2.13090 2.19392 2.72411 2.85079 3.13444 3.65028 3.71686 3.72911 3.92132 4.03582 4.15434 4.22373 4.30701 4.43393 4.45853 4.55952 4.58723 4.63090 4.66700 4.69559 4.85312 4.87643 4.90941 4.92455 5.01450 5.03501 5.08817 5.10707 5.13301 5.15905 5.26789 5.31106 5.46340 5.69871 5.79633 5.80914 5.92380 6.00595 6.09036 6.11856 6.35506 6.67208 6.92274 6.93487 7.00647 7.54110 8.31962 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.011376 B = 0.003511 C = 0.002794 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.747202 B = 7972.669102 C =10017.683400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.070 3.930 2 N -0.626 5.626 3 C 0.139 3.861 4 C 0.039 3.961 5 N -0.509 5.509 6 C 0.024 3.976 7 C -0.118 4.118 8 C -0.130 4.130 9 C 0.030 3.970 10 C 0.692 3.308 11 O -0.618 6.618 12 N -0.670 5.670 13 C 0.176 3.824 14 C -0.251 4.251 15 C -0.089 4.089 16 C -0.200 4.200 17 C 0.091 3.909 18 C -0.506 4.506 19 H 0.059 0.941 20 C 0.040 3.960 21 N -0.821 5.821 22 Si 0.980 3.020 23 H -0.263 1.263 24 H -0.257 1.257 25 H -0.264 1.264 26 C -0.237 4.237 27 H 0.078 0.922 28 H 0.101 0.899 29 H 0.072 0.928 30 H 0.118 0.882 31 H 0.059 0.941 32 H 0.001 0.999 33 H 0.091 0.909 34 H 0.091 0.909 35 H 0.019 0.981 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.061 0.939 39 H 0.092 0.908 40 H 0.026 0.974 41 H 0.095 0.905 42 H 0.416 0.584 43 H 0.132 0.868 44 H 0.126 0.874 45 H 0.105 0.895 46 H 0.290 0.710 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.079 18.360 2.253 20.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 N -0.364 5.364 3 C 0.015 3.985 4 C -0.090 4.090 5 N -0.233 5.233 6 C -0.103 4.103 7 C -0.156 4.156 8 C -0.168 4.168 9 C -0.098 4.098 10 C 0.394 3.606 11 O -0.497 6.497 12 N -0.320 5.320 13 C 0.082 3.918 14 C -0.273 4.273 15 C -0.107 4.107 16 C -0.220 4.220 17 C 0.089 3.911 18 C -0.535 4.535 19 H 0.077 0.923 20 C -0.175 4.175 21 N -0.447 5.447 22 Si 0.800 3.200 23 H -0.187 1.187 24 H -0.181 1.181 25 H -0.189 1.189 26 C -0.259 4.259 27 H 0.096 0.904 28 H 0.120 0.880 29 H 0.090 0.910 30 H 0.136 0.864 31 H 0.078 0.922 32 H 0.020 0.980 33 H 0.109 0.891 34 H 0.110 0.890 35 H 0.038 0.962 36 H 0.094 0.906 37 H 0.108 0.892 38 H 0.080 0.920 39 H 0.111 0.889 40 H 0.045 0.955 41 H 0.113 0.887 42 H 0.256 0.744 43 H 0.150 0.850 44 H 0.144 0.856 45 H 0.123 0.877 46 H 0.101 0.899 47 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.679 18.573 2.347 20.235 hybrid contribution 1.008 -1.159 -0.869 1.765 sum -6.672 17.414 1.477 18.707 Atomic orbital electron populations 1.22089 0.76695 1.04727 1.03651 1.47061 1.08199 1.03470 1.77630 1.21355 0.97648 0.83504 0.95953 1.22591 0.99162 0.89426 0.97858 1.64890 1.20647 1.28651 1.09143 1.23338 0.90517 0.97430 0.99044 1.22491 0.99460 0.98557 0.95137 1.22415 0.95642 1.01820 0.96909 1.22981 0.97594 0.99222 0.90022 1.16205 0.85044 0.81446 0.77913 1.90938 1.13947 1.86539 1.58278 1.42498 1.10336 1.02859 1.76259 1.17311 0.93648 0.84775 0.96042 1.20441 1.05520 0.92414 1.08896 1.20833 0.94934 0.97044 0.97918 1.21307 0.99757 0.99055 1.01851 1.17805 0.91897 0.91358 0.90083 1.19695 1.08376 0.95607 1.29834 0.92292 1.26665 1.02844 0.94263 0.93729 1.69847 1.36469 1.04304 1.34066 0.85306 0.76909 0.78723 0.79046 1.18701 1.18106 1.18884 1.20898 0.99901 0.97864 1.07240 0.90393 0.88011 0.90977 0.86426 0.92214 0.98042 0.89061 0.89024 0.96235 0.90555 0.89211 0.91997 0.88913 0.95512 0.88698 0.74443 0.84968 0.85646 0.87663 0.89925 0.90433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.07 10.16 127.77 1.30 2.37 16 2 N -0.63 -16.64 2.87 -864.92 -2.48 -19.13 16 3 C 0.14 3.40 5.07 86.38 0.44 3.84 16 4 C 0.04 0.99 5.35 86.30 0.46 1.46 16 5 N -0.51 -11.44 5.40 -883.01 -4.76 -16.20 16 6 C 0.02 0.56 5.10 86.65 0.44 1.01 16 7 C -0.12 -2.08 7.06 31.80 0.22 -1.86 16 8 C -0.13 -2.25 6.93 31.47 0.22 -2.03 16 9 C 0.03 0.61 6.70 86.45 0.58 1.19 16 10 C 0.69 26.64 8.01 179.06 1.43 28.08 16 11 O -0.62 -30.77 13.68 -3.97 -0.05 -30.82 16 12 N -0.67 -24.60 5.17 -317.34 -1.64 -26.24 16 13 C 0.18 8.26 6.25 38.10 0.24 8.50 16 14 C -0.25 -10.82 9.97 22.58 0.23 -10.59 16 15 C -0.09 -4.12 10.02 22.20 0.22 -3.90 16 16 C -0.20 -11.00 8.69 22.75 0.20 -10.81 16 17 C 0.09 5.43 5.57 -21.31 -0.12 5.31 16 18 C -0.51 -30.28 9.05 23.46 0.21 -30.07 16 19 H 0.06 3.57 7.90 -2.91 -0.02 3.55 16 20 C 0.04 2.15 5.16 85.25 0.44 2.59 16 21 N -0.82 -44.58 10.94 21.82 0.24 -44.34 16 22 Si 0.98 40.97 29.59 68.60 2.03 43.00 16 23 H -0.26 -10.85 7.11 99.48 0.71 -10.15 16 24 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 25 H -0.26 -10.87 7.11 99.48 0.71 -10.17 16 26 C -0.24 -13.38 8.39 22.85 0.19 -13.18 16 27 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 28 H 0.10 1.05 8.07 -2.38 -0.02 1.03 16 29 H 0.07 1.06 6.44 -2.38 -0.02 1.05 16 30 H 0.12 2.05 8.07 -2.38 -0.02 2.03 16 31 H 0.06 1.81 6.07 -2.39 -0.01 1.79 16 32 H 0.00 0.04 7.81 -2.39 -0.02 0.02 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.09 1.90 7.66 -2.39 -0.02 1.89 16 35 H 0.02 0.58 8.00 -2.39 -0.02 0.56 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 40 H 0.03 0.65 7.57 -2.39 -0.02 0.63 16 41 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.42 11.23 6.63 -92.70 -0.61 10.61 16 43 H 0.13 4.52 8.06 -2.91 -0.02 4.50 16 44 H 0.13 4.91 8.06 -2.91 -0.02 4.88 16 45 H 0.11 5.97 6.16 -2.91 -0.02 5.96 16 46 H 0.29 14.10 8.30 -92.71 -0.77 13.33 16 47 H 0.08 4.70 6.48 -2.91 -0.02 4.68 16 Total: -1.00 -75.81 374.70 0.38 -75.43 By element: Atomic # 1 Polarization: 36.04 SS G_CDS: 0.35 Total: 36.40 kcal Atomic # 6 Polarization: -24.80 SS G_CDS: 6.70 Total: -18.09 kcal Atomic # 7 Polarization: -97.26 SS G_CDS: -8.65 Total: -105.91 kcal Atomic # 8 Polarization: -30.77 SS G_CDS: -0.05 Total: -30.82 kcal Atomic # 14 Polarization: 40.97 SS G_CDS: 2.03 Total: 43.00 kcal Total: -75.81 0.38 -75.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455910493.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.784 kcal (2) G-P(sol) polarization free energy of solvation -75.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds