Wall clock time and date at job start Tue Mar 31 2020 11:37:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00151 * 2 1 4 4 C 1.46901 * 111.00252 * 123.95200 * 2 1 3 5 5 C 1.52997 * 109.46933 * 162.78977 * 4 2 1 6 6 N 1.46505 * 112.90719 * 291.27164 * 5 4 2 7 7 C 1.34781 * 119.99889 * 304.90194 * 6 5 4 8 8 O 1.21579 * 119.99787 * 4.81898 * 7 6 5 9 9 N 1.34772 * 119.99850 * 184.81699 * 7 6 5 10 10 C 1.39962 * 119.99834 * 185.23764 * 9 7 6 11 11 C 1.39278 * 119.94542 * 325.05603 * 10 9 7 12 12 C 1.38491 * 120.42824 * 179.72158 * 11 10 9 13 13 C 1.37683 * 120.32034 * 0.55639 * 12 11 10 14 14 C 1.40745 * 119.88227 * 359.72441 * 13 12 11 15 15 C 1.41405 * 120.20768 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99835 * 212.01095 * 15 14 13 17 17 C 1.39932 * 120.00219 * 32.01750 * 15 14 13 18 18 N 1.30833 * 120.00113 * 7.40440 * 17 15 14 19 19 Si 1.86803 * 119.99968 * 187.40659 * 17 15 14 20 20 H 1.48496 * 109.47130 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46894 * 119.99870 * 19 17 15 22 22 H 1.48501 * 109.46656 * 239.99631 * 19 17 15 23 23 C 1.38231 * 119.94377 * 145.33346 * 10 9 7 24 24 C 1.53777 * 113.61718 * 62.52245 * 5 4 2 25 25 C 1.53779 * 87.08358 * 139.98059 * 24 5 4 26 26 C 1.53785 * 113.61406 * 160.02285 * 5 4 2 27 27 H 1.09007 * 109.46652 * 296.04645 * 1 2 3 28 28 H 1.09001 * 109.46993 * 56.04268 * 1 2 3 29 29 H 1.08998 * 109.46933 * 176.04793 * 1 2 3 30 30 H 1.09001 * 109.47725 * 191.57383 * 3 2 1 31 31 H 1.09008 * 109.46943 * 311.56815 * 3 2 1 32 32 H 1.09004 * 109.47373 * 71.56809 * 3 2 1 33 33 H 1.08998 * 109.46706 * 42.79329 * 4 2 1 34 34 H 1.08997 * 109.47351 * 282.78945 * 4 2 1 35 35 H 0.97005 * 119.99979 * 124.90960 * 6 5 4 36 36 H 0.97006 * 120.00558 * 5.23303 * 9 7 6 37 37 H 1.08009 * 119.78742 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.83719 * 180.25808 * 12 11 10 39 39 H 1.07996 * 120.05878 * 179.74353 * 13 12 11 40 40 H 0.96991 * 119.99933 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.16787 * 359.97073 * 23 10 9 42 42 H 1.09002 * 113.61563 * 25.42893 * 24 5 4 43 43 H 1.09006 * 113.61737 * 254.52636 * 24 5 4 44 44 H 1.09000 * 113.61537 * 89.11837 * 25 24 5 45 45 H 1.08999 * 113.61594 * 220.01929 * 25 24 5 46 46 H 1.09001 * 113.61613 * 105.47060 * 26 5 4 47 47 H 1.08999 * 113.68981 * 334.57592 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4647 -1.1100 0.8845 6 7 3.6449 -2.0774 -0.2009 7 6 3.0067 -3.2638 -0.1591 8 8 2.2143 -3.4967 0.7330 9 7 3.2470 -4.1919 -1.1064 10 6 2.5058 -5.3790 -1.1269 11 6 2.0992 -5.9656 0.0691 12 6 1.3606 -7.1370 0.0603 13 6 1.0296 -7.7410 -1.1319 14 6 1.4385 -7.1629 -2.3482 15 6 1.1020 -7.7771 -3.5766 16 1 1.7701 -7.6970 -4.4213 17 6 -0.0968 -8.4888 -3.6977 18 7 -0.9723 -8.4658 -2.7258 19 14 -0.4470 -9.4716 -5.2472 20 1 0.6933 -9.3347 -6.1885 21 1 -0.6297 -10.9026 -4.8949 22 1 -1.6834 -8.9583 -5.8900 23 6 2.1834 -5.9703 -2.3340 24 6 4.3751 0.1237 0.7675 25 6 5.4184 -0.6672 1.5741 26 6 4.2430 -1.4657 2.1622 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0656 1.3499 -0.2062 31 1 1.4891 1.9550 -0.7689 32 1 1.8224 1.8271 0.9750 33 1 1.4217 -1.6854 1.2532 34 1 1.9134 -0.1697 2.0463 35 1 4.2237 -1.8641 -0.9496 36 1 3.9336 -4.0373 -1.7740 37 1 2.3582 -5.5017 1.0095 38 1 1.0467 -7.5814 0.9933 39 1 0.4569 -8.6567 -1.1337 40 1 -1.8030 -8.9593 -2.8096 41 1 2.5016 -5.5184 -3.2619 42 1 3.9919 1.0003 1.2900 43 1 4.6865 0.3414 -0.2542 44 1 6.0867 -1.2658 0.9552 45 1 5.9490 -0.0645 2.3112 46 1 4.4478 -2.5312 2.2665 47 1 3.8247 -1.0245 3.0669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455912698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:34 Heat of formation + Delta-G solvation = 33.450912 kcal Electronic energy + Delta-G solvation = -26943.379144 eV Core-core repulsion = 23320.202715 eV Total energy + Delta-G solvation = -3623.176429 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71845 -38.95983 -37.04570 -36.46443 -34.23714 -33.25495 -32.48346 -29.71522 -28.75783 -27.99387 -27.66355 -25.61860 -25.12550 -23.92353 -22.10131 -21.17670 -20.81752 -20.01719 -19.14564 -17.88782 -17.44393 -16.27256 -15.72808 -15.40275 -15.24160 -14.96039 -14.84846 -14.70635 -14.24646 -14.17896 -13.96244 -13.07762 -12.99100 -12.82861 -12.68081 -12.38667 -12.28546 -12.15862 -12.11243 -11.69518 -11.57166 -11.39304 -11.13966 -11.10081 -11.01148 -10.83333 -10.58892 -10.41618 -10.31818 -10.03929 -9.44917 -9.32965 -9.19941 -8.80301 -8.73483 -8.29122 -7.32125 -6.79694 -6.55794 -4.30038 2.84707 2.89561 3.06741 3.13774 3.18572 3.28222 3.77901 3.87848 4.02674 4.35164 4.48382 4.58351 4.71840 4.78132 4.88268 5.12386 5.23038 5.28757 5.35993 5.45397 5.50084 5.54650 5.63975 5.66763 5.73948 5.76557 5.93137 5.94752 5.98192 6.04764 6.21021 6.35675 6.66600 6.78686 6.86803 6.96250 7.01661 7.04369 7.13181 7.13919 7.33822 7.47273 7.73300 7.91232 8.13740 8.17588 8.35689 8.54359 8.72486 8.98901 9.02787 9.15566 10.36937 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.002979 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.847310 B = 9398.282815 C = 9908.450396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.537 5.537 3 C 0.009 3.991 4 C 0.044 3.956 5 C 0.189 3.811 6 N -0.719 5.719 7 C 0.708 3.292 8 O -0.570 6.570 9 N -0.682 5.682 10 C 0.166 3.834 11 C -0.217 4.217 12 C -0.102 4.102 13 C -0.159 4.159 14 C 0.121 3.879 15 C -0.469 4.469 16 H 0.075 0.925 17 C 0.073 3.927 18 N -0.808 5.808 19 Si 0.910 3.090 20 H -0.263 1.263 21 H -0.274 1.274 22 H -0.276 1.276 23 C -0.237 4.237 24 C -0.139 4.139 25 C -0.142 4.142 26 C -0.144 4.144 27 H 0.020 0.980 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.060 0.940 32 H 0.021 0.979 33 H 0.110 0.890 34 H 0.037 0.963 35 H 0.393 0.607 36 H 0.394 0.606 37 H 0.110 0.890 38 H 0.090 0.910 39 H 0.118 0.882 40 H 0.277 0.723 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.067 0.933 46 H 0.074 0.926 47 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.963 16.803 5.478 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.260 5.260 3 C -0.139 4.139 4 C -0.084 4.084 5 C 0.100 3.900 6 N -0.374 5.374 7 C 0.409 3.591 8 O -0.447 6.447 9 N -0.327 5.327 10 C 0.073 3.927 11 C -0.238 4.238 12 C -0.121 4.121 13 C -0.179 4.179 14 C 0.119 3.881 15 C -0.500 4.500 16 H 0.093 0.907 17 C -0.142 4.142 18 N -0.435 5.435 19 Si 0.735 3.265 20 H -0.186 1.186 21 H -0.200 1.200 22 H -0.202 1.202 23 C -0.259 4.259 24 C -0.177 4.177 25 C -0.179 4.179 26 C -0.183 4.183 27 H 0.039 0.961 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.098 0.902 31 H 0.079 0.921 32 H 0.039 0.961 33 H 0.128 0.872 34 H 0.055 0.945 35 H 0.227 0.773 36 H 0.228 0.772 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.136 0.864 40 H 0.088 0.912 41 H 0.112 0.888 42 H 0.112 0.888 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.086 0.914 46 H 0.093 0.907 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 8.145 16.303 5.926 19.163 hybrid contribution -0.090 0.270 -0.727 0.781 sum 8.055 16.572 5.199 19.146 Atomic orbital electron populations 1.22378 0.87277 1.02740 0.99752 1.61818 1.07753 1.12887 1.43580 1.22829 1.01989 0.89401 0.99663 1.22626 0.95862 0.99697 0.90240 1.20840 0.93375 0.88382 0.87366 1.44576 1.52119 1.15573 1.25173 1.15855 0.80820 0.79734 0.82694 1.90834 1.37961 1.79130 1.36737 1.42588 1.39981 1.17917 1.32264 1.17245 0.96266 0.84693 0.94455 1.20547 1.08629 0.98671 0.95951 1.20640 0.98780 0.95659 0.97000 1.21398 1.04032 1.01230 0.91208 1.17366 0.88519 0.88898 0.93357 1.19488 1.03956 1.29032 0.97550 0.90700 1.25830 0.95674 0.95008 0.97699 1.69805 1.07195 1.34466 1.32057 0.86242 0.78958 0.79558 0.81747 1.18646 1.19951 1.20152 1.20794 1.11566 0.99768 0.93818 1.23411 0.96452 0.96820 1.00970 1.22886 0.96527 0.98826 0.99683 1.23316 0.96307 1.01509 0.97192 0.96095 0.91697 0.90958 0.90193 0.92087 0.96079 0.87243 0.94496 0.77325 0.77238 0.87242 0.89155 0.86384 0.91235 0.88788 0.88786 0.90679 0.90130 0.91390 0.90681 0.89603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.52 60.07 0.57 0.90 16 2 N -0.54 -6.74 4.97 -251.25 -1.25 -7.98 16 3 C 0.01 0.09 8.45 60.07 0.51 0.59 16 4 C 0.04 0.58 4.47 -3.82 -0.02 0.57 16 5 C 0.19 2.18 0.76 -131.01 -0.10 2.08 16 6 N -0.72 -9.32 5.20 -51.65 -0.27 -9.59 16 7 C 0.71 12.54 8.16 -86.92 -0.71 11.83 16 8 O -0.57 -12.13 11.51 5.30 0.06 -12.07 16 9 N -0.68 -12.39 5.34 -14.27 -0.08 -12.46 16 10 C 0.17 3.81 6.29 -83.76 -0.53 3.28 16 11 C -0.22 -5.25 8.71 -39.10 -0.34 -5.59 16 12 C -0.10 -2.53 10.02 -39.69 -0.40 -2.92 16 13 C -0.16 -4.25 8.64 -38.84 -0.34 -4.59 16 14 C 0.12 3.28 5.52 -106.85 -0.59 2.69 16 15 C -0.47 -12.63 9.05 -37.74 -0.34 -12.98 16 16 H 0.07 1.93 7.86 -52.49 -0.41 1.52 16 17 C 0.07 1.89 5.29 -17.34 -0.09 1.80 16 18 N -0.81 -21.64 10.89 55.55 0.61 -21.03 16 19 Si 0.91 19.19 29.57 -169.99 -5.03 14.16 16 20 H -0.26 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 22 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 23 C -0.24 -5.84 9.70 -38.69 -0.38 -6.21 16 24 C -0.14 -1.14 4.92 -25.92 -0.13 -1.27 16 25 C -0.14 -1.17 7.99 -25.92 -0.21 -1.38 16 26 C -0.14 -1.56 7.37 -25.91 -0.19 -1.76 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.71 8.04 -51.93 -0.42 0.30 16 29 H 0.07 1.04 8.08 -51.93 -0.42 0.62 16 30 H 0.08 0.66 4.55 -51.93 -0.24 0.43 16 31 H 0.06 0.54 7.98 -51.92 -0.41 0.12 16 32 H 0.02 0.18 7.94 -51.93 -0.41 -0.23 16 33 H 0.11 1.87 5.57 -51.93 -0.29 1.59 16 34 H 0.04 0.44 7.76 -51.93 -0.40 0.04 16 35 H 0.39 4.08 8.65 -40.82 -0.35 3.73 16 36 H 0.39 5.74 8.85 -40.82 -0.36 5.38 16 37 H 0.11 2.64 6.17 -52.48 -0.32 2.32 16 38 H 0.09 2.03 8.06 -52.48 -0.42 1.61 16 39 H 0.12 3.26 6.35 -52.49 -0.33 2.92 16 40 H 0.28 6.77 8.30 -40.82 -0.34 6.43 16 41 H 0.09 2.15 8.06 -52.49 -0.42 1.72 16 42 H 0.09 0.69 6.71 -51.93 -0.35 0.34 16 43 H 0.07 0.56 7.63 -51.93 -0.40 0.17 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.09 0.85 8.00 -51.93 -0.42 0.43 16 LS Contribution 370.76 15.07 5.59 5.59 Total: -1.00 -31.06 370.76 -10.84 -41.90 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -7.21 Total: 14.43 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -3.27 Total: -12.95 kcal Atomic # 7 Polarization: -50.08 SS G_CDS: -0.99 Total: -51.07 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.03 Total: 14.16 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -31.06 -10.84 -41.90 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455912698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.355 kcal (2) G-P(sol) polarization free energy of solvation -31.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.905 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds