Wall clock time and date at job start Tue Mar 31 2020 11:37:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00151 * 2 1 4 4 C 1.46901 * 111.00252 * 123.95200 * 2 1 3 5 5 C 1.52997 * 109.46933 * 162.78977 * 4 2 1 6 6 N 1.46505 * 112.90719 * 291.27164 * 5 4 2 7 7 C 1.34781 * 119.99889 * 304.90194 * 6 5 4 8 8 O 1.21579 * 119.99787 * 4.81898 * 7 6 5 9 9 N 1.34772 * 119.99850 * 184.81699 * 7 6 5 10 10 C 1.39962 * 119.99834 * 185.23764 * 9 7 6 11 11 C 1.39278 * 119.94542 * 325.05603 * 10 9 7 12 12 C 1.38491 * 120.42824 * 179.72158 * 11 10 9 13 13 C 1.37683 * 120.32034 * 0.55639 * 12 11 10 14 14 C 1.40745 * 119.88227 * 359.72441 * 13 12 11 15 15 C 1.41405 * 120.20768 * 180.02562 * 14 13 12 16 16 H 1.08001 * 119.99835 * 212.01095 * 15 14 13 17 17 C 1.39932 * 120.00219 * 32.01750 * 15 14 13 18 18 N 1.30833 * 120.00113 * 7.40440 * 17 15 14 19 19 Si 1.86803 * 119.99968 * 187.40659 * 17 15 14 20 20 H 1.48496 * 109.47130 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46894 * 119.99870 * 19 17 15 22 22 H 1.48501 * 109.46656 * 239.99631 * 19 17 15 23 23 C 1.38231 * 119.94377 * 145.33346 * 10 9 7 24 24 C 1.53777 * 113.61718 * 62.52245 * 5 4 2 25 25 C 1.53779 * 87.08358 * 139.98059 * 24 5 4 26 26 C 1.53785 * 113.61406 * 160.02285 * 5 4 2 27 27 H 1.09007 * 109.46652 * 296.04645 * 1 2 3 28 28 H 1.09001 * 109.46993 * 56.04268 * 1 2 3 29 29 H 1.08998 * 109.46933 * 176.04793 * 1 2 3 30 30 H 1.09001 * 109.47725 * 191.57383 * 3 2 1 31 31 H 1.09008 * 109.46943 * 311.56815 * 3 2 1 32 32 H 1.09004 * 109.47373 * 71.56809 * 3 2 1 33 33 H 1.08998 * 109.46706 * 42.79329 * 4 2 1 34 34 H 1.08997 * 109.47351 * 282.78945 * 4 2 1 35 35 H 0.97005 * 119.99979 * 124.90960 * 6 5 4 36 36 H 0.97006 * 120.00558 * 5.23303 * 9 7 6 37 37 H 1.08009 * 119.78742 * 359.97438 * 11 10 9 38 38 H 1.08004 * 119.83719 * 180.25808 * 12 11 10 39 39 H 1.07996 * 120.05878 * 179.74353 * 13 12 11 40 40 H 0.96991 * 119.99933 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.16787 * 359.97073 * 23 10 9 42 42 H 1.09002 * 113.61563 * 25.42893 * 24 5 4 43 43 H 1.09006 * 113.61737 * 254.52636 * 24 5 4 44 44 H 1.09000 * 113.61537 * 89.11837 * 25 24 5 45 45 H 1.08999 * 113.61594 * 220.01929 * 25 24 5 46 46 H 1.09001 * 113.61613 * 105.47060 * 26 5 4 47 47 H 1.08999 * 113.68981 * 334.57592 * 26 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7659 1.1376 5 6 3.4647 -1.1100 0.8845 6 7 3.6449 -2.0774 -0.2009 7 6 3.0067 -3.2638 -0.1591 8 8 2.2143 -3.4967 0.7330 9 7 3.2470 -4.1919 -1.1064 10 6 2.5058 -5.3790 -1.1269 11 6 2.0992 -5.9656 0.0691 12 6 1.3606 -7.1370 0.0603 13 6 1.0296 -7.7410 -1.1319 14 6 1.4385 -7.1629 -2.3482 15 6 1.1020 -7.7771 -3.5766 16 1 1.7701 -7.6970 -4.4213 17 6 -0.0968 -8.4888 -3.6977 18 7 -0.9723 -8.4658 -2.7258 19 14 -0.4470 -9.4716 -5.2472 20 1 0.6933 -9.3347 -6.1885 21 1 -0.6297 -10.9026 -4.8949 22 1 -1.6834 -8.9583 -5.8900 23 6 2.1834 -5.9703 -2.3340 24 6 4.3751 0.1237 0.7675 25 6 5.4184 -0.6672 1.5741 26 6 4.2430 -1.4657 2.1622 27 1 -0.3633 0.4513 0.9234 28 1 -0.3633 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0708 30 1 3.0656 1.3499 -0.2062 31 1 1.4891 1.9550 -0.7689 32 1 1.8224 1.8271 0.9750 33 1 1.4217 -1.6854 1.2532 34 1 1.9134 -0.1697 2.0463 35 1 4.2237 -1.8641 -0.9496 36 1 3.9336 -4.0373 -1.7740 37 1 2.3582 -5.5017 1.0095 38 1 1.0467 -7.5814 0.9933 39 1 0.4569 -8.6567 -1.1337 40 1 -1.8030 -8.9593 -2.8096 41 1 2.5016 -5.5184 -3.2619 42 1 3.9919 1.0003 1.2900 43 1 4.6865 0.3414 -0.2542 44 1 6.0867 -1.2658 0.9552 45 1 5.9490 -0.0645 2.3112 46 1 4.4478 -2.5312 2.2665 47 1 3.8247 -1.0245 3.0669 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455912698.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:37:33 Heat of formation + Delta-G solvation = 12.760330 kcal Electronic energy + Delta-G solvation = -26944.276355 eV Core-core repulsion = 23320.202715 eV Total energy + Delta-G solvation = -3624.073640 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.86767 -40.32396 -38.78458 -37.37951 -35.99634 -34.91858 -33.88235 -31.70371 -30.06606 -29.13058 -28.82589 -27.12294 -26.40254 -24.85603 -23.54494 -22.81019 -22.19449 -21.54778 -20.20423 -19.33043 -19.21117 -17.47938 -17.14808 -16.74878 -16.52251 -16.46228 -16.24017 -15.82596 -15.59667 -15.39725 -15.22127 -14.79516 -14.62184 -14.07607 -13.87402 -13.59701 -13.45862 -13.26245 -13.17062 -12.99836 -12.91367 -12.86172 -12.78643 -12.52065 -12.34153 -12.20742 -11.87508 -11.75631 -11.40488 -11.34557 -11.23974 -11.13751 -10.90224 -10.47546 -9.90674 -9.31668 -9.22645 -8.67397 -8.48085 -6.34970 1.00143 1.00678 1.41214 1.52826 1.56539 1.74147 2.25409 2.30082 2.84501 2.97426 3.29585 3.55782 3.73131 3.78612 3.92128 4.01486 4.25580 4.34836 4.40986 4.46374 4.51504 4.64317 4.74345 4.75145 4.78403 4.81523 4.94502 4.98009 5.04035 5.05445 5.07390 5.07835 5.13599 5.17785 5.19626 5.28302 5.36300 5.38952 5.76832 5.80799 5.84692 6.05076 6.11770 6.14216 6.22223 6.23993 6.43564 6.73032 6.98448 7.03160 7.20876 7.72051 8.45184 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.002979 C = 0.002825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.847310 B = 9398.282815 C = 9908.450396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.553 5.553 3 C 0.009 3.991 4 C 0.048 3.952 5 C 0.172 3.828 6 N -0.698 5.698 7 C 0.704 3.296 8 O -0.607 6.607 9 N -0.675 5.675 10 C 0.179 3.821 11 C -0.227 4.227 12 C -0.104 4.104 13 C -0.185 4.185 14 C 0.095 3.905 15 C -0.500 4.500 16 H 0.079 0.921 17 C 0.029 3.971 18 N -0.842 5.842 19 Si 0.988 3.012 20 H -0.255 1.255 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.247 4.247 24 C -0.121 4.121 25 C -0.129 4.129 26 C -0.151 4.151 27 H 0.030 0.970 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.096 0.904 31 H 0.068 0.932 32 H 0.031 0.969 33 H 0.063 0.937 34 H 0.049 0.951 35 H 0.409 0.591 36 H 0.414 0.586 37 H 0.109 0.891 38 H 0.106 0.894 39 H 0.102 0.898 40 H 0.284 0.716 41 H 0.109 0.891 42 H 0.111 0.889 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.603 19.196 4.493 22.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.277 5.277 3 C -0.138 4.138 4 C -0.081 4.081 5 C 0.085 3.915 6 N -0.353 5.353 7 C 0.405 3.595 8 O -0.487 6.487 9 N -0.323 5.323 10 C 0.085 3.915 11 C -0.248 4.248 12 C -0.123 4.123 13 C -0.205 4.205 14 C 0.092 3.908 15 C -0.531 4.531 16 H 0.097 0.903 17 C -0.184 4.184 18 N -0.470 5.470 19 Si 0.808 3.192 20 H -0.178 1.178 21 H -0.191 1.191 22 H -0.195 1.195 23 C -0.269 4.269 24 C -0.158 4.158 25 C -0.166 4.166 26 C -0.190 4.190 27 H 0.048 0.952 28 H 0.097 0.903 29 H 0.058 0.942 30 H 0.114 0.886 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.082 0.918 34 H 0.067 0.933 35 H 0.246 0.754 36 H 0.250 0.750 37 H 0.127 0.873 38 H 0.125 0.875 39 H 0.120 0.880 40 H 0.094 0.906 41 H 0.127 0.873 42 H 0.129 0.871 43 H 0.110 0.890 44 H 0.101 0.899 45 H 0.106 0.894 46 H 0.064 0.936 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 9.848 18.763 4.935 21.757 hybrid contribution -0.595 -0.362 -0.308 0.762 sum 9.252 18.401 4.627 21.109 Atomic orbital electron populations 1.22315 0.87799 1.00962 1.00861 1.61831 1.07575 1.14915 1.43329 1.22911 1.02857 0.87495 1.00545 1.22479 0.96262 0.98068 0.91247 1.21173 0.93144 0.89844 0.87388 1.44408 1.50895 1.13973 1.26028 1.16042 0.80804 0.80745 0.81897 1.90827 1.39649 1.80025 1.38167 1.42398 1.40001 1.16707 1.33173 1.17221 0.95187 0.85631 0.93467 1.20664 1.08987 0.98615 0.96558 1.20845 0.98410 0.95839 0.97186 1.21314 1.05653 1.01480 0.92086 1.17737 0.89333 0.89997 0.93722 1.19789 1.04961 1.30556 0.97757 0.90284 1.26770 0.94927 0.95459 1.01209 1.69893 1.07774 1.35101 1.34197 0.85079 0.78939 0.77864 0.77273 1.17849 1.19131 1.19477 1.20939 1.11498 0.99437 0.94999 1.23383 0.94636 0.95553 1.02241 1.22842 0.95740 0.98250 0.99763 1.23380 0.97944 1.00247 0.97420 0.95153 0.90322 0.94234 0.88595 0.91349 0.95082 0.91831 0.93292 0.75415 0.74980 0.87262 0.87543 0.88044 0.90571 0.87256 0.87078 0.88997 0.89933 0.89400 0.93629 0.88805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.52 127.69 1.22 1.93 16 2 N -0.55 -13.11 4.97 -948.82 -4.71 -17.82 16 3 C 0.01 0.14 8.45 127.69 1.08 1.22 16 4 C 0.05 1.25 4.47 86.30 0.39 1.63 16 5 C 0.17 3.68 0.76 4.13 0.00 3.69 16 6 N -0.70 -17.07 5.20 -435.60 -2.27 -19.34 16 7 C 0.70 24.86 8.16 179.05 1.46 26.32 16 8 O -0.61 -26.61 11.51 -3.96 -0.05 -26.65 16 9 N -0.68 -24.21 5.34 -317.34 -1.69 -25.91 16 10 C 0.18 8.32 6.29 38.09 0.24 8.56 16 11 C -0.23 -11.27 8.71 22.58 0.20 -11.08 16 12 C -0.10 -5.34 10.02 22.20 0.22 -5.12 16 13 C -0.19 -10.35 8.64 22.75 0.20 -10.15 16 14 C 0.09 5.29 5.52 -21.31 -0.12 5.17 16 15 C -0.50 -27.49 9.05 23.46 0.21 -27.28 16 16 H 0.08 4.12 7.86 -2.91 -0.02 4.10 16 17 C 0.03 1.49 5.29 85.25 0.45 1.95 16 18 N -0.84 -46.27 10.89 21.82 0.24 -46.03 16 19 Si 0.99 39.42 29.57 68.60 2.03 41.45 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 21 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 22 H -0.27 -10.42 7.11 99.48 0.71 -9.72 16 23 C -0.25 -12.30 9.70 22.85 0.22 -12.07 16 24 C -0.12 -1.50 4.92 31.12 0.15 -1.35 16 25 C -0.13 -1.69 7.99 31.12 0.25 -1.44 16 26 C -0.15 -3.06 7.37 31.12 0.23 -2.83 16 27 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 28 H 0.08 1.66 8.04 -2.39 -0.02 1.64 16 29 H 0.04 1.20 8.08 -2.39 -0.02 1.18 16 30 H 0.10 1.18 4.55 -2.39 -0.01 1.17 16 31 H 0.07 0.99 7.98 -2.38 -0.02 0.97 16 32 H 0.03 0.44 7.94 -2.38 -0.02 0.42 16 33 H 0.06 2.27 5.57 -2.39 -0.01 2.25 16 34 H 0.05 1.11 7.76 -2.39 -0.02 1.09 16 35 H 0.41 7.40 8.65 -92.70 -0.80 6.60 16 36 H 0.41 11.43 8.85 -92.70 -0.82 10.61 16 37 H 0.11 5.43 6.17 -2.91 -0.02 5.41 16 38 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 39 H 0.10 5.90 6.35 -2.91 -0.02 5.88 16 40 H 0.28 14.16 8.30 -92.72 -0.77 13.40 16 41 H 0.11 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.11 1.09 6.71 -2.39 -0.02 1.08 16 43 H 0.09 0.91 7.63 -2.38 -0.02 0.89 16 44 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 47 H 0.09 1.72 8.00 -2.39 -0.02 1.71 16 Total: -1.00 -70.78 370.76 -0.68 -71.46 By element: Atomic # 1 Polarization: 44.33 SS G_CDS: -0.63 Total: 43.70 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 6.40 Total: -20.86 kcal Atomic # 7 Polarization: -100.66 SS G_CDS: -8.43 Total: -109.10 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.65 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -70.78 -0.68 -71.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455912698.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.216 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds