Wall clock time and date at job start Tue Mar 31 2020 11:14:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46841 * 111.00301 * 2 1 4 4 C 1.53043 * 109.52747 * 174.15922 * 3 2 1 5 5 C 1.53114 * 109.27384 * 59.17683 * 4 3 2 6 6 C 1.53003 * 109.51959 * 182.44419 * 5 4 3 7 7 N 1.46499 * 109.47159 * 294.68208 * 6 5 4 8 8 C 1.34778 * 120.00480 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99371 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00468 * 180.02562 * 8 7 6 11 11 C 1.39956 * 120.00103 * 174.84765 * 10 8 7 12 12 C 1.39288 * 119.94300 * 145.76684 * 11 10 8 13 13 C 1.38495 * 120.42599 * 180.02562 * 12 11 10 14 14 C 1.37676 * 120.31937 * 359.97418 * 13 12 11 15 15 C 1.40742 * 119.88704 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.21246 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00313 * 205.18333 * 16 15 14 18 18 C 1.39936 * 119.99804 * 25.17929 * 16 15 14 19 19 N 1.30829 * 120.00214 * 16.78606 * 18 16 15 20 20 Si 1.86803 * 119.99911 * 196.78260 * 18 16 15 21 21 H 1.48500 * 109.47223 * 60.00147 * 20 18 16 22 22 H 1.48501 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47154 * 300.00274 * 20 18 16 24 24 C 1.38229 * 119.94644 * 325.49196 * 11 10 8 25 25 C 1.53113 * 109.16560 * 302.34917 * 5 4 3 26 26 C 1.46843 * 111.00033 * 235.78824 * 2 1 3 27 27 H 1.08998 * 109.47157 * 184.20661 * 1 2 3 28 28 H 1.09005 * 109.46672 * 64.21349 * 1 2 3 29 29 H 1.09001 * 109.47175 * 304.21329 * 1 2 3 30 30 H 1.09001 * 109.46242 * 294.17565 * 3 2 1 31 31 H 1.09006 * 109.46511 * 54.14181 * 3 2 1 32 32 H 1.08995 * 109.49975 * 299.24085 * 4 3 2 33 33 H 1.08996 * 109.53524 * 179.13677 * 4 3 2 34 34 H 1.09003 * 109.52484 * 62.25907 * 5 4 3 35 35 H 1.09001 * 109.47206 * 54.68461 * 6 5 4 36 36 H 1.08998 * 109.47290 * 174.68896 * 6 5 4 37 37 H 0.97005 * 119.99859 * 359.97438 * 7 6 5 38 38 H 0.97009 * 120.00031 * 354.84962 * 10 8 7 39 39 H 1.07991 * 119.79068 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.83867 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.06164 * 179.97438 * 14 13 12 42 42 H 0.96994 * 120.00340 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.16402 * 0.02562 * 24 11 10 44 44 H 1.09006 * 109.50461 * 297.71759 * 25 5 4 45 45 H 1.09000 * 109.53751 * 177.61830 * 25 5 4 46 46 H 1.09001 * 109.46679 * 305.85936 * 26 2 1 47 47 H 1.09002 * 109.46638 * 65.82697 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 5.6361 0.4448 -0.8404 7 7 6.2227 1.7824 -0.9537 8 6 7.5551 1.9464 -0.8337 9 8 8.2702 0.9842 -0.6309 10 7 8.0947 3.1770 -0.9375 11 6 9.4624 3.3632 -0.7063 12 6 10.1664 4.3203 -1.4332 13 6 11.5202 4.5125 -1.2129 14 6 12.1850 3.7592 -0.2717 15 6 11.4867 2.7883 0.4704 16 6 12.1629 2.0103 1.4384 17 1 11.7833 1.0363 1.7095 18 6 13.3238 2.5026 2.0451 19 7 13.6061 3.7783 1.9788 20 14 14.4706 1.3381 2.9498 21 1 14.9688 0.3033 2.0084 22 1 15.6192 2.1021 3.4995 23 1 13.7350 0.6831 4.0612 24 6 10.1111 2.6009 0.2471 25 6 3.5181 -0.8715 -1.0208 26 6 1.9952 -0.7708 -1.1337 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3633 0.4471 -0.9254 29 1 -0.3633 0.5778 0.8498 30 1 1.7325 1.8608 -0.9376 31 1 1.5635 1.9257 0.8330 32 1 3.7814 0.8567 1.0906 33 1 3.9105 2.3509 0.1314 34 1 3.8888 1.0354 -1.9560 35 1 5.8648 0.0297 0.1412 36 1 6.0520 -0.2009 -1.6138 37 1 5.6523 2.5500 -1.1159 38 1 7.5351 3.9338 -1.1724 39 1 9.6536 4.9158 -2.1739 40 1 12.0567 5.2576 -1.7816 41 1 13.2409 3.9122 -0.1036 42 1 14.4106 4.1196 2.3996 43 1 9.5652 1.8613 0.8140 44 1 3.7813 -1.3837 -0.0953 45 1 3.9098 -1.4309 -1.8703 46 1 1.5634 -1.7716 -1.1242 47 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455916439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:38 Heat of formation + Delta-G solvation = -13.747485 kcal Electronic energy + Delta-G solvation = -25785.195602 eV Core-core repulsion = 22159.972497 eV Total energy + Delta-G solvation = -3625.223105 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -40.06177 -39.28446 -37.32806 -35.62861 -34.30958 -33.19505 -32.68543 -31.18453 -29.74697 -28.70565 -27.41204 -25.25324 -24.86596 -23.52673 -22.20646 -21.33990 -20.77424 -20.23074 -19.77714 -17.93926 -17.57148 -16.12437 -15.88442 -15.50935 -15.42829 -15.11319 -14.93688 -14.65269 -14.52379 -14.26179 -13.93947 -13.54561 -13.33828 -12.99758 -12.84250 -12.75304 -12.54358 -12.31358 -12.05167 -11.89408 -11.58356 -11.50570 -11.15802 -11.05442 -10.94709 -10.84712 -10.74710 -10.61635 -10.43501 -10.13043 -9.65159 -9.42119 -9.05787 -8.94515 -8.82406 -8.70199 -7.37455 -6.82107 -6.63830 -4.26748 2.79965 2.94494 3.12199 3.12926 3.17193 3.28718 3.56078 3.79828 4.01732 4.39521 4.43056 4.49093 4.65354 4.72138 4.81359 4.95470 4.97044 5.05582 5.14973 5.24153 5.31695 5.43040 5.48071 5.49002 5.57845 5.66768 5.78494 5.82714 5.85728 5.92176 6.14495 6.30169 6.46481 6.63432 6.69634 6.71271 6.85771 6.87536 7.11257 7.16409 7.31376 7.42480 7.76061 7.90676 8.06801 8.17975 8.32158 8.51535 8.73558 8.97438 9.04721 9.12853 10.28293 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.002329 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.868758 B =12017.059932 C =12795.090457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.056 3.944 4 C -0.113 4.113 5 C -0.099 4.099 6 C 0.146 3.854 7 N -0.751 5.751 8 C 0.697 3.303 9 O -0.566 6.566 10 N -0.682 5.682 11 C 0.170 3.830 12 C -0.264 4.264 13 C -0.092 4.092 14 C -0.174 4.174 15 C 0.120 3.880 16 C -0.458 4.458 17 H 0.077 0.923 18 C 0.076 3.924 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.264 1.264 22 H -0.279 1.279 23 H -0.266 1.266 24 C -0.209 4.209 25 C -0.110 4.110 26 C 0.057 3.943 27 H 0.068 0.932 28 H 0.023 0.977 29 H 0.068 0.932 30 H 0.032 0.968 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.391 0.609 38 H 0.393 0.607 39 H 0.087 0.913 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.279 0.721 43 H 0.107 0.893 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.308 -3.304 -5.190 23.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.269 5.269 3 C -0.072 4.072 4 C -0.151 4.151 5 C -0.118 4.118 6 C 0.022 3.978 7 N -0.408 5.408 8 C 0.398 3.602 9 O -0.442 6.442 10 N -0.329 5.329 11 C 0.077 3.923 12 C -0.286 4.286 13 C -0.111 4.111 14 C -0.193 4.193 15 C 0.117 3.883 16 C -0.488 4.488 17 H 0.096 0.904 18 C -0.141 4.141 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.188 1.188 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.231 4.231 25 C -0.148 4.148 26 C -0.071 4.071 27 H 0.087 0.913 28 H 0.042 0.958 29 H 0.086 0.914 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.224 0.776 38 H 0.226 0.774 39 H 0.106 0.894 40 H 0.109 0.891 41 H 0.136 0.864 42 H 0.090 0.910 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.094 0.906 47 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -21.341 -4.291 -4.460 22.220 hybrid contribution -0.401 0.806 -0.549 1.055 sum -21.742 -3.485 -5.009 22.582 Atomic orbital electron populations 1.22351 0.87327 1.02253 1.00397 1.61915 1.07485 1.13964 1.43525 1.22110 0.95775 0.88936 1.00397 1.21670 0.93774 1.00375 0.99265 1.21447 0.94109 0.97123 0.99151 1.21158 0.90832 0.83483 1.02358 1.45129 1.05904 1.10045 1.79754 1.15974 0.81811 0.83943 0.78516 1.90979 1.59602 1.38896 1.54677 1.42590 1.09205 1.07821 1.73252 1.17223 0.80159 0.98672 0.96219 1.20004 0.95106 1.06948 1.06502 1.20439 0.93388 0.98962 0.98339 1.21327 1.00058 1.00295 0.97667 1.17490 0.89886 0.90609 0.90329 1.19544 1.06898 1.03270 1.19069 0.90437 1.25897 0.97672 0.95121 0.95459 1.69822 1.23866 1.13196 1.35362 0.86370 0.79395 0.80978 0.79967 1.18828 1.20431 1.19044 1.21002 0.94832 1.05329 1.01932 1.21563 0.93953 0.96057 1.03249 1.22085 0.95558 0.98227 0.91220 0.91347 0.95822 0.91361 0.95000 0.90685 0.90515 0.91295 0.90918 0.91430 0.91717 0.77596 0.77387 0.89435 0.89115 0.86368 0.90972 0.87543 0.90434 0.90960 0.90611 0.94957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.16 9.59 60.06 0.58 0.73 16 2 N -0.54 -4.32 4.91 -242.96 -1.19 -5.52 16 3 C 0.06 0.42 5.46 -3.83 -0.02 0.40 16 4 C -0.11 -0.92 5.22 -26.65 -0.14 -1.06 16 5 C -0.10 -0.82 2.29 -90.50 -0.21 -1.03 16 6 C 0.15 1.69 5.07 -4.04 -0.02 1.67 16 7 N -0.75 -9.66 5.31 -65.23 -0.35 -10.01 16 8 C 0.70 12.98 8.29 -86.92 -0.72 12.26 16 9 O -0.57 -13.37 14.09 5.29 0.07 -13.30 16 10 N -0.68 -12.55 5.34 -14.27 -0.08 -12.63 16 11 C 0.17 3.96 6.25 -83.76 -0.52 3.44 16 12 C -0.26 -5.96 9.97 -39.10 -0.39 -6.35 16 13 C -0.09 -2.20 10.02 -39.69 -0.40 -2.60 16 14 C -0.17 -4.67 8.69 -38.84 -0.34 -5.00 16 15 C 0.12 3.39 5.57 -106.85 -0.59 2.79 16 16 C -0.46 -12.88 9.05 -37.74 -0.34 -13.22 16 17 H 0.08 2.15 7.90 -52.49 -0.41 1.74 16 18 C 0.08 1.97 5.16 -17.34 -0.09 1.89 16 19 N -0.80 -21.14 10.94 55.55 0.61 -20.53 16 20 Si 0.91 19.51 29.59 -169.99 -5.03 14.48 16 21 H -0.26 -5.64 7.11 56.52 0.40 -5.24 16 22 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 23 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 24 C -0.21 -5.61 8.39 -38.69 -0.32 -5.93 16 25 C -0.11 -0.85 5.38 -26.65 -0.14 -0.99 16 26 C 0.06 0.41 5.46 -3.84 -0.02 0.39 16 27 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.02 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.07 0.39 8.09 -51.93 -0.42 -0.03 16 30 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 32 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.53 7.27 -51.93 -0.38 0.15 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.39 3.75 7.71 -40.82 -0.31 3.43 16 38 H 0.39 5.55 8.84 -40.82 -0.36 5.19 16 39 H 0.09 1.70 8.06 -52.49 -0.42 1.28 16 40 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 41 H 0.12 3.25 6.17 -52.48 -0.32 2.92 16 42 H 0.28 6.75 8.30 -40.82 -0.34 6.41 16 43 H 0.11 2.96 6.48 -52.49 -0.34 2.62 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 46 H 0.08 0.50 8.12 -51.93 -0.42 0.07 16 47 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 375.87 15.07 5.66 5.66 Total: -1.00 -32.41 375.87 -11.60 -44.01 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -7.60 Total: 10.45 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.70 Total: -12.62 kcal Atomic # 7 Polarization: -47.68 SS G_CDS: -1.01 Total: -48.69 kcal Atomic # 8 Polarization: -13.37 SS G_CDS: 0.07 Total: -13.30 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.03 Total: 14.48 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.41 -11.60 -44.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455916439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.264 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds