Wall clock time and date at job start Tue Mar 31 2020 11:14:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46841 * 111.00301 * 2 1 4 4 C 1.53043 * 109.52747 * 174.15922 * 3 2 1 5 5 C 1.53114 * 109.27384 * 59.17683 * 4 3 2 6 6 C 1.53003 * 109.51959 * 182.44419 * 5 4 3 7 7 N 1.46499 * 109.47159 * 294.68208 * 6 5 4 8 8 C 1.34778 * 120.00480 * 180.02562 * 7 6 5 9 9 O 1.21586 * 119.99371 * 359.97438 * 8 7 6 10 10 N 1.34769 * 120.00468 * 180.02562 * 8 7 6 11 11 C 1.39956 * 120.00103 * 174.84765 * 10 8 7 12 12 C 1.39288 * 119.94300 * 145.76684 * 11 10 8 13 13 C 1.38495 * 120.42599 * 180.02562 * 12 11 10 14 14 C 1.37676 * 120.31937 * 359.97418 * 13 12 11 15 15 C 1.40742 * 119.88704 * 0.02562 * 14 13 12 16 16 C 1.41407 * 120.21246 * 179.97438 * 15 14 13 17 17 H 1.07998 * 120.00313 * 205.18333 * 16 15 14 18 18 C 1.39936 * 119.99804 * 25.17929 * 16 15 14 19 19 N 1.30829 * 120.00214 * 16.78606 * 18 16 15 20 20 Si 1.86803 * 119.99911 * 196.78260 * 18 16 15 21 21 H 1.48500 * 109.47223 * 60.00147 * 20 18 16 22 22 H 1.48501 * 109.47024 * 180.02562 * 20 18 16 23 23 H 1.48505 * 109.47154 * 300.00274 * 20 18 16 24 24 C 1.38229 * 119.94644 * 325.49196 * 11 10 8 25 25 C 1.53113 * 109.16560 * 302.34917 * 5 4 3 26 26 C 1.46843 * 111.00033 * 235.78824 * 2 1 3 27 27 H 1.08998 * 109.47157 * 184.20661 * 1 2 3 28 28 H 1.09005 * 109.46672 * 64.21349 * 1 2 3 29 29 H 1.09001 * 109.47175 * 304.21329 * 1 2 3 30 30 H 1.09001 * 109.46242 * 294.17565 * 3 2 1 31 31 H 1.09006 * 109.46511 * 54.14181 * 3 2 1 32 32 H 1.08995 * 109.49975 * 299.24085 * 4 3 2 33 33 H 1.08996 * 109.53524 * 179.13677 * 4 3 2 34 34 H 1.09003 * 109.52484 * 62.25907 * 5 4 3 35 35 H 1.09001 * 109.47206 * 54.68461 * 6 5 4 36 36 H 1.08998 * 109.47290 * 174.68896 * 6 5 4 37 37 H 0.97005 * 119.99859 * 359.97438 * 7 6 5 38 38 H 0.97009 * 120.00031 * 354.84962 * 10 8 7 39 39 H 1.07991 * 119.79068 * 359.97438 * 12 11 10 40 40 H 1.08001 * 119.83867 * 180.02562 * 13 12 11 41 41 H 1.08003 * 120.06164 * 179.97438 * 14 13 12 42 42 H 0.96994 * 120.00340 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.16402 * 0.02562 * 24 11 10 44 44 H 1.09006 * 109.50461 * 297.71759 * 25 5 4 45 45 H 1.09000 * 109.53751 * 177.61830 * 25 5 4 46 46 H 1.09001 * 109.46679 * 305.85936 * 26 2 1 47 47 H 1.09002 * 109.46638 * 65.82697 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3709 0.0000 4 6 3.5182 1.3341 0.1468 5 6 4.1188 0.5369 -1.0143 6 6 5.6361 0.4448 -0.8404 7 7 6.2227 1.7824 -0.9537 8 6 7.5551 1.9464 -0.8337 9 8 8.2702 0.9842 -0.6309 10 7 8.0947 3.1770 -0.9375 11 6 9.4624 3.3632 -0.7063 12 6 10.1664 4.3203 -1.4332 13 6 11.5202 4.5125 -1.2129 14 6 12.1850 3.7592 -0.2717 15 6 11.4867 2.7883 0.4704 16 6 12.1629 2.0103 1.4384 17 1 11.7833 1.0363 1.7095 18 6 13.3238 2.5026 2.0451 19 7 13.6061 3.7783 1.9788 20 14 14.4706 1.3381 2.9498 21 1 14.9688 0.3033 2.0084 22 1 15.6192 2.1021 3.4995 23 1 13.7350 0.6831 4.0612 24 6 10.1111 2.6009 0.2471 25 6 3.5181 -0.8715 -1.0208 26 6 1.9952 -0.7708 -1.1337 27 1 -0.3633 -1.0249 0.0754 28 1 -0.3633 0.4471 -0.9254 29 1 -0.3633 0.5778 0.8498 30 1 1.7325 1.8608 -0.9376 31 1 1.5635 1.9257 0.8330 32 1 3.7814 0.8567 1.0906 33 1 3.9105 2.3509 0.1314 34 1 3.8888 1.0354 -1.9560 35 1 5.8648 0.0297 0.1412 36 1 6.0520 -0.2009 -1.6138 37 1 5.6523 2.5500 -1.1159 38 1 7.5351 3.9338 -1.1724 39 1 9.6536 4.9158 -2.1739 40 1 12.0567 5.2576 -1.7816 41 1 13.2409 3.9122 -0.1036 42 1 14.4106 4.1196 2.3996 43 1 9.5652 1.8613 0.8140 44 1 3.7813 -1.3837 -0.0953 45 1 3.9098 -1.4309 -1.8703 46 1 1.5634 -1.7716 -1.1242 47 1 1.7325 -0.2709 -2.0660 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455916439.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:37 Heat of formation + Delta-G solvation = -35.601705 kcal Electronic energy + Delta-G solvation = -25786.143272 eV Core-core repulsion = 22159.972497 eV Total energy + Delta-G solvation = -3626.170775 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.47349 -40.12675 -39.08554 -36.71592 -36.08026 -34.86946 -33.86579 -31.79779 -31.72812 -30.12915 -28.58290 -27.23015 -25.70220 -24.19018 -23.42819 -22.75214 -22.42993 -21.65229 -20.68400 -19.57243 -19.22057 -17.57255 -17.10559 -16.78051 -16.54250 -16.37722 -16.08136 -15.96360 -15.67143 -15.49812 -15.13490 -14.89210 -14.67123 -14.26688 -14.04796 -13.95354 -13.51158 -13.38348 -13.31622 -13.01483 -12.93519 -12.90088 -12.76211 -12.45765 -12.17391 -12.12415 -11.98325 -11.67816 -11.56557 -11.41816 -11.29120 -11.21385 -10.96680 -10.77317 -10.09721 -9.37295 -9.25079 -8.70945 -8.56667 -6.35216 0.94956 1.05107 1.36342 1.47740 1.52127 1.72158 2.20543 2.22410 2.76168 3.02598 3.31779 3.65859 3.75761 3.77532 3.88113 4.21404 4.31583 4.37111 4.47505 4.49176 4.58376 4.60812 4.66172 4.67518 4.72738 4.85547 4.87576 4.92439 5.03488 5.03922 5.07278 5.12438 5.14400 5.17255 5.21366 5.24714 5.34418 5.40855 5.51785 5.74834 5.85140 6.07787 6.13282 6.15860 6.16351 6.21534 6.38851 6.70633 6.96019 7.03073 7.13076 7.62491 8.34720 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020955 B = 0.002329 C = 0.002188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.868758 B =12017.059932 C =12795.090457 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.562 5.562 3 C 0.058 3.942 4 C -0.112 4.112 5 C -0.085 4.085 6 C 0.147 3.853 7 N -0.723 5.723 8 C 0.693 3.307 9 O -0.621 6.621 10 N -0.670 5.670 11 C 0.177 3.823 12 C -0.251 4.251 13 C -0.090 4.090 14 C -0.199 4.199 15 C 0.088 3.912 16 C -0.503 4.503 17 H 0.061 0.939 18 C 0.038 3.962 19 N -0.822 5.822 20 Si 0.981 3.019 21 H -0.263 1.263 22 H -0.259 1.259 23 H -0.263 1.263 24 C -0.238 4.238 25 C -0.109 4.109 26 C 0.060 3.940 27 H 0.072 0.928 28 H 0.029 0.971 29 H 0.071 0.929 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.058 0.942 33 H 0.076 0.924 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.412 0.588 38 H 0.418 0.582 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.104 0.896 42 H 0.289 0.711 43 H 0.081 0.919 44 H 0.064 0.936 45 H 0.080 0.920 46 H 0.082 0.918 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.930 -2.159 -6.503 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.287 5.287 3 C -0.069 4.069 4 C -0.150 4.150 5 C -0.104 4.104 6 C 0.023 3.977 7 N -0.381 5.381 8 C 0.393 3.607 9 O -0.500 6.500 10 N -0.319 5.319 11 C 0.083 3.917 12 C -0.273 4.273 13 C -0.109 4.109 14 C -0.219 4.219 15 C 0.086 3.914 16 C -0.533 4.533 17 H 0.079 0.921 18 C -0.177 4.177 19 N -0.447 5.447 20 Si 0.802 3.198 21 H -0.187 1.187 22 H -0.183 1.183 23 H -0.188 1.188 24 C -0.260 4.260 25 C -0.148 4.148 26 C -0.068 4.068 27 H 0.091 0.909 28 H 0.047 0.953 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.249 0.751 38 H 0.255 0.745 39 H 0.150 0.850 40 H 0.142 0.858 41 H 0.122 0.878 42 H 0.100 0.900 43 H 0.100 0.900 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.100 0.900 47 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -23.060 -3.093 -5.798 23.978 hybrid contribution -0.055 0.488 -0.216 0.537 sum -23.115 -2.605 -6.015 24.026 Atomic orbital electron populations 1.22372 0.86322 1.02737 1.00821 1.61920 1.08547 1.14243 1.44032 1.22079 0.94888 0.88989 1.00982 1.21650 0.94667 1.00453 0.98183 1.21353 0.91161 0.97889 0.99987 1.21251 0.93093 0.82430 1.00975 1.44895 1.03925 1.11541 1.77726 1.16221 0.83163 0.83195 0.78096 1.90958 1.61428 1.40660 1.56941 1.42325 1.07744 1.08854 1.72927 1.17282 0.82261 0.97462 0.94685 1.20441 0.94664 1.06097 1.06084 1.20830 0.94268 0.98541 0.97239 1.21294 0.99692 1.01574 0.99388 1.17838 0.90826 0.91639 0.91134 1.19696 1.09239 1.03276 1.21067 0.92093 1.26693 0.98378 0.96791 0.95870 1.69848 1.24568 1.14501 1.35830 0.85285 0.77408 0.78652 0.78502 1.18731 1.18306 1.18794 1.20944 0.94755 1.06392 1.03871 1.21559 0.94697 0.95540 1.02974 1.22068 0.94744 0.98684 0.91317 0.90889 0.95271 0.91034 0.94143 0.90335 0.92365 0.90524 0.89248 0.93452 0.92542 0.75095 0.74458 0.84963 0.85785 0.87766 0.89993 0.90038 0.91763 0.90157 0.89957 0.94283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.59 127.69 1.22 1.49 16 2 N -0.56 -7.96 4.91 -922.58 -4.53 -12.49 16 3 C 0.06 0.76 5.46 86.33 0.47 1.23 16 4 C -0.11 -1.65 5.22 30.65 0.16 -1.49 16 5 C -0.08 -1.27 2.29 -10.72 -0.02 -1.29 16 6 C 0.15 3.34 5.07 86.38 0.44 3.78 16 7 N -0.72 -17.65 5.31 -478.54 -2.54 -20.20 16 8 C 0.69 25.58 8.29 179.06 1.48 27.07 16 9 O -0.62 -30.35 14.09 -3.99 -0.06 -30.41 16 10 N -0.67 -23.62 5.34 -317.34 -1.70 -25.31 16 11 C 0.18 8.18 6.25 38.09 0.24 8.42 16 12 C -0.25 -10.71 9.97 22.58 0.23 -10.49 16 13 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 14 C -0.20 -10.96 8.69 22.75 0.20 -10.77 16 15 C 0.09 5.23 5.57 -21.31 -0.12 5.12 16 16 C -0.50 -29.98 9.05 23.46 0.21 -29.76 16 17 H 0.06 3.66 7.90 -2.91 -0.02 3.64 16 18 C 0.04 2.02 5.16 85.25 0.44 2.46 16 19 N -0.82 -44.61 10.94 21.82 0.24 -44.38 16 20 Si 0.98 40.96 29.59 68.60 2.03 42.99 16 21 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 22 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 23 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 24 C -0.24 -13.27 8.39 22.85 0.19 -13.08 16 25 C -0.11 -1.56 5.38 30.64 0.16 -1.40 16 26 C 0.06 0.75 5.46 86.33 0.47 1.22 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.03 0.28 8.14 -2.38 -0.02 0.26 16 29 H 0.07 0.70 8.09 -2.39 -0.02 0.68 16 30 H 0.04 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.08 0.97 8.09 -2.38 -0.02 0.95 16 32 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 0.99 7.27 -2.39 -0.02 0.98 16 34 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.41 6.72 7.71 -92.70 -0.71 6.00 16 38 H 0.42 10.42 8.84 -92.70 -0.82 9.61 16 39 H 0.13 4.46 8.06 -2.92 -0.02 4.44 16 40 H 0.12 4.85 8.06 -2.91 -0.02 4.83 16 41 H 0.10 5.91 6.17 -2.91 -0.02 5.90 16 42 H 0.29 14.08 8.30 -92.71 -0.77 13.32 16 43 H 0.08 4.86 6.48 -2.91 -0.02 4.84 16 44 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 45 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 46 H 0.08 0.93 8.12 -2.39 -0.02 0.91 16 47 H 0.04 0.45 8.14 -2.39 -0.02 0.43 16 Total: -1.00 -74.73 375.87 -1.12 -75.85 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.56 Total: 35.39 kcal Atomic # 6 Polarization: -27.45 SS G_CDS: 6.00 Total: -21.45 kcal Atomic # 7 Polarization: -93.85 SS G_CDS: -8.53 Total: -102.38 kcal Atomic # 8 Polarization: -30.35 SS G_CDS: -0.06 Total: -30.41 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -74.73 -1.12 -75.85 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455916439.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.246 kcal (2) G-P(sol) polarization free energy of solvation -74.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds