Wall clock time and date at job start Tue Mar 31 2020 11:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00148 * 2 1 4 4 C 1.46898 * 110.99601 * 123.95678 * 2 1 3 5 5 H 1.09003 * 110.26827 * 182.73984 * 4 2 1 6 6 C 1.54337 * 110.30198 * 304.80714 * 4 2 1 7 7 C 1.54345 * 102.39903 * 145.30572 * 6 4 2 8 8 C 1.51386 * 105.17030 * 333.62954 * 7 6 4 9 9 C 1.38379 * 130.32699 * 197.24052 * 8 7 6 10 10 C 1.38730 * 120.16401 * 179.97438 * 9 8 7 11 11 N 1.39947 * 120.10852 * 179.97438 * 10 9 8 12 12 C 1.34774 * 119.99780 * 147.06467 * 11 10 9 13 13 O 1.21583 * 120.00297 * 355.19492 * 12 11 10 14 14 N 1.34775 * 119.99880 * 175.18917 * 12 11 10 15 15 C 1.46500 * 120.00110 * 0.02562 * 14 12 11 16 16 C 1.46505 * 120.00127 * 180.02562 * 14 12 11 17 17 C 1.50696 * 109.47214 * 90.00253 * 16 14 12 18 18 H 1.08004 * 119.99959 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00254 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00083 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 119.99711 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.47218 * 90.00110 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99759 * 21 19 17 24 24 H 1.48498 * 109.47622 * 330.00066 * 21 19 17 25 25 C 1.38882 * 119.78160 * 0.27179 * 10 9 8 26 26 C 1.37970 * 119.86619 * 359.50340 * 25 10 9 27 27 C 1.38281 * 109.75419 * 17.19556 * 8 7 6 28 28 H 1.08999 * 109.47156 * 302.53628 * 1 2 3 29 29 H 1.09007 * 109.47401 * 62.53544 * 1 2 3 30 30 H 1.09003 * 109.47577 * 182.53783 * 1 2 3 31 31 H 1.08998 * 109.47239 * 183.95190 * 3 2 1 32 32 H 1.08996 * 109.47326 * 303.95512 * 3 2 1 33 33 H 1.09004 * 109.46979 * 63.95429 * 3 2 1 34 34 H 1.08995 * 110.82355 * 27.08363 * 6 4 2 35 35 H 1.08999 * 110.99445 * 263.60469 * 6 4 2 36 36 H 1.08995 * 110.30730 * 214.70400 * 7 6 4 37 37 H 1.09005 * 110.38530 * 92.59204 * 7 6 4 38 38 H 1.08003 * 119.91846 * 359.93305 * 9 8 7 39 39 H 0.97000 * 119.99951 * 327.06511 * 11 10 9 40 40 H 1.09006 * 109.47245 * 269.99670 * 15 14 12 41 41 H 1.09000 * 109.47330 * 29.99709 * 15 14 12 42 42 H 1.08999 * 109.47266 * 149.99820 * 15 14 12 43 43 H 1.08996 * 109.46862 * 329.99960 * 16 14 12 44 44 H 1.08998 * 109.46853 * 210.00395 * 16 14 12 45 45 H 0.97000 * 120.00138 * 179.97438 * 20 19 17 46 46 H 1.08002 * 120.06509 * 179.70558 * 25 10 9 47 47 H 1.08000 * 119.84550 * 180.28177 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 3.0842 -0.7180 1.1537 6 6 1.4158 -0.2248 2.4617 7 6 1.2793 -1.5058 3.3118 8 6 1.1206 -2.6305 2.3109 9 6 0.6528 -3.9216 2.4813 10 6 0.5959 -4.7906 1.4015 11 7 0.1230 -6.0963 1.5753 12 6 -0.5489 -6.7077 0.5797 13 8 -0.8205 -6.0963 -0.4355 14 7 -0.9196 -7.9969 0.7095 15 6 -0.5927 -8.7336 1.9329 16 6 -1.6495 -8.6618 -0.3729 17 6 -0.6687 -9.3019 -1.3211 18 1 0.3923 -9.2219 -1.1358 19 6 -1.1257 -9.9897 -2.4252 20 7 -0.2697 -10.5479 -3.2530 21 14 -2.9607 -10.1287 -2.7453 22 1 -3.4052 -8.9854 -3.5826 23 1 -3.2444 -11.4017 -3.4552 24 1 -3.6916 -10.1091 -1.4528 25 6 1.0156 -4.3626 0.1487 26 6 1.4771 -3.0731 -0.0178 27 6 1.5321 -2.2053 1.0611 28 1 -0.3633 0.5527 0.8664 29 1 -0.3634 0.4740 -0.9119 30 1 -0.3634 -1.0266 0.0455 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 0.4422 0.2372 2.2983 35 1 2.1035 0.4794 2.9300 36 1 0.3997 -1.4427 3.9524 37 1 2.1749 -1.6591 3.9140 38 1 0.3317 -4.2537 3.4576 39 1 0.2789 -6.5612 2.4122 40 1 0.3789 -9.2144 1.8189 41 1 -0.5595 -8.0426 2.7752 42 1 -1.3542 -9.4919 2.1149 43 1 -2.2491 -7.9277 -0.9111 44 1 -2.3025 -9.4274 0.0460 45 1 -0.5912 -11.0321 -4.0296 46 1 0.9778 -5.0369 -0.6941 47 1 1.7991 -2.7392 -0.9931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455944681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:27 Heat of formation + Delta-G solvation = 26.247721 kcal Electronic energy + Delta-G solvation = -26598.357447 eV Core-core repulsion = 22974.868665 eV Total energy + Delta-G solvation = -3623.488782 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.72804 -39.70297 -37.44107 -35.31734 -34.69809 -33.43754 -32.41060 -30.61333 -28.76854 -28.10837 -27.69420 -26.92825 -25.83745 -23.55303 -22.92699 -22.37774 -20.88669 -19.90191 -19.20616 -17.77680 -16.96643 -16.70357 -16.38062 -16.10207 -15.38404 -14.90111 -14.69188 -14.52927 -14.45001 -14.04701 -13.86316 -13.45694 -13.21194 -13.13158 -12.77386 -12.70227 -12.47186 -12.40636 -12.13604 -12.05319 -11.93254 -11.80353 -11.67615 -11.51257 -11.28705 -11.18930 -10.91623 -10.63614 -10.52838 -10.17480 -9.82867 -9.58392 -9.33802 -8.58013 -8.56246 -8.46635 -7.91847 -7.55856 -6.07613 -4.06370 1.48391 1.57758 3.08574 3.30507 3.36275 3.38479 3.62402 3.80745 4.06315 4.32693 4.40490 4.41313 4.47381 4.75135 4.99056 5.01208 5.11694 5.15540 5.17855 5.24268 5.30551 5.38227 5.41071 5.50484 5.52059 5.62008 5.65344 5.66070 5.77821 5.78842 5.89677 5.93883 5.98495 6.04777 6.17728 6.44465 6.46927 6.67029 6.68909 6.80987 6.88972 6.90963 6.95780 7.23441 7.32387 7.46977 7.62659 8.43182 8.48322 8.95415 9.13279 9.52405 11.05868 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.002885 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.464691 B = 9702.680407 C =10466.850311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.536 5.536 3 C 0.023 3.977 4 C 0.129 3.871 5 H 0.093 0.907 6 C -0.157 4.157 7 C -0.073 4.073 8 C -0.081 4.081 9 C -0.148 4.148 10 C 0.187 3.813 11 N -0.695 5.695 12 C 0.700 3.300 13 O -0.565 6.565 14 N -0.608 5.608 15 C 0.086 3.914 16 C 0.231 3.769 17 C -0.529 4.529 18 H 0.074 0.926 19 C 0.072 3.928 20 N -0.897 5.897 21 Si 0.877 3.123 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.266 1.266 25 C -0.122 4.122 26 C -0.065 4.065 27 C -0.119 4.119 28 H 0.028 0.972 29 H 0.066 0.934 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.025 0.975 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.079 0.921 38 H 0.118 0.882 39 H 0.401 0.599 40 H 0.055 0.945 41 H 0.050 0.950 42 H 0.072 0.928 43 H 0.038 0.962 44 H 0.032 0.968 45 H 0.265 0.735 46 H 0.143 0.857 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.513 19.775 15.660 25.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.258 5.258 3 C -0.125 4.125 4 C 0.020 3.980 5 H 0.111 0.889 6 C -0.196 4.196 7 C -0.111 4.111 8 C -0.082 4.082 9 C -0.169 4.169 10 C 0.090 3.910 11 N -0.344 5.344 12 C 0.402 3.598 13 O -0.441 6.441 14 N -0.344 5.344 15 C -0.058 4.058 16 C 0.110 3.890 17 C -0.568 4.568 18 H 0.092 0.908 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.191 1.191 25 C -0.143 4.143 26 C -0.084 4.084 27 C -0.120 4.120 28 H 0.046 0.954 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.044 0.956 34 H 0.096 0.904 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.097 0.903 38 H 0.136 0.864 39 H 0.238 0.762 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.091 0.909 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.074 0.926 46 H 0.161 0.839 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.423 19.752 14.251 24.596 hybrid contribution -1.062 -0.202 0.914 1.415 sum 2.360 19.550 15.164 24.854 Atomic orbital electron populations 1.22457 0.87195 1.02891 1.00252 1.62119 1.08368 1.13396 1.41900 1.22374 1.00698 0.89005 1.00424 1.21180 0.99214 0.89804 0.87757 0.88883 1.22990 1.02132 0.97624 0.96834 1.20904 1.02148 0.91574 0.96451 1.20127 0.99024 0.93767 0.95317 1.20121 1.06069 0.92434 0.98278 1.17377 0.95313 0.83926 0.94339 1.42936 1.58992 1.13995 1.18477 1.15839 0.78973 0.82071 0.82899 1.90910 1.59947 1.64535 1.28724 1.47131 1.59383 1.08787 1.19050 1.21604 1.01897 0.96546 0.85771 1.19635 0.92191 0.92195 0.85002 1.21340 0.94806 1.32985 1.07646 0.90772 1.24850 0.97727 0.94962 0.95479 1.69897 1.34138 1.35485 1.14057 0.86847 0.85904 0.77853 0.79032 1.19847 1.21089 1.19100 1.21285 0.98621 0.96849 0.97518 1.20495 0.97665 0.91947 0.98245 1.20165 1.03084 0.95020 0.93730 0.95382 0.91528 0.90633 0.91439 0.91435 0.95598 0.90427 0.90834 0.91017 0.90299 0.86390 0.76190 0.92650 0.93109 0.90887 0.94374 0.95037 0.92554 0.83918 0.85704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 8.90 60.06 0.53 0.74 16 2 N -0.54 -5.51 5.00 -243.31 -1.22 -6.73 16 3 C 0.02 0.18 9.42 60.06 0.57 0.75 16 4 C 0.13 1.31 2.96 -67.82 -0.20 1.11 16 5 H 0.09 0.90 8.13 -51.93 -0.42 0.48 16 6 C -0.16 -1.30 5.54 -25.33 -0.14 -1.44 16 7 C -0.07 -0.65 6.77 -26.84 -0.18 -0.83 16 8 C -0.08 -0.97 6.13 -104.22 -0.64 -1.61 16 9 C -0.15 -1.92 9.95 -39.35 -0.39 -2.31 16 10 C 0.19 2.98 6.28 -83.73 -0.53 2.45 16 11 N -0.69 -11.28 5.22 -14.25 -0.07 -11.36 16 12 C 0.70 14.74 8.03 -86.92 -0.70 14.04 16 13 O -0.57 -14.20 13.58 5.29 0.07 -14.13 16 14 N -0.61 -12.58 2.86 -188.74 -0.54 -13.12 16 15 C 0.09 1.28 10.29 59.85 0.62 1.90 16 16 C 0.23 5.64 4.27 -5.19 -0.02 5.62 16 17 C -0.53 -15.26 9.94 -34.44 -0.34 -15.60 16 18 H 0.07 2.36 8.06 -52.48 -0.42 1.93 16 19 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 20 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 21 Si 0.88 21.59 27.47 -169.99 -4.67 16.92 16 22 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 24 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 25 C -0.12 -2.12 8.66 -39.44 -0.34 -2.46 16 26 C -0.06 -0.96 9.75 -39.56 -0.39 -1.34 16 27 C -0.12 -1.51 4.35 -104.15 -0.45 -1.96 16 28 H 0.03 0.26 6.11 -51.93 -0.32 -0.06 16 29 H 0.07 0.64 8.14 -51.92 -0.42 0.21 16 30 H 0.07 0.94 6.74 -51.93 -0.35 0.59 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.03 0.18 7.43 -51.93 -0.39 -0.21 16 34 H 0.08 0.67 5.57 -51.93 -0.29 0.38 16 35 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.12 1.26 8.06 -52.48 -0.42 0.83 16 39 H 0.40 5.07 6.51 -40.82 -0.27 4.81 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.05 0.56 6.30 -51.93 -0.33 0.23 16 42 H 0.07 1.01 7.89 -51.93 -0.41 0.60 16 43 H 0.04 1.00 6.85 -51.93 -0.36 0.64 16 44 H 0.03 0.73 6.95 -51.93 -0.36 0.37 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.14 2.93 6.40 -52.49 -0.34 2.59 16 47 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -34.43 369.89 -9.99 -44.42 By element: Atomic # 1 Polarization: 11.59 SS G_CDS: -7.21 Total: 4.37 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -2.70 Total: 1.06 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -1.06 Total: -58.22 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: 0.07 Total: -14.13 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.43 -9.99 -44.42 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455944681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.669 kcal (2) G-P(sol) polarization free energy of solvation -34.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds