Wall clock time and date at job start Tue Mar 31 2020 11:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00148 * 2 1 4 4 C 1.46898 * 110.99601 * 123.95678 * 2 1 3 5 5 H 1.09003 * 110.26827 * 182.73984 * 4 2 1 6 6 C 1.54337 * 110.30198 * 304.80714 * 4 2 1 7 7 C 1.54345 * 102.39903 * 145.30572 * 6 4 2 8 8 C 1.51386 * 105.17030 * 333.62954 * 7 6 4 9 9 C 1.38379 * 130.32699 * 197.24052 * 8 7 6 10 10 C 1.38730 * 120.16401 * 179.97438 * 9 8 7 11 11 N 1.39947 * 120.10852 * 179.97438 * 10 9 8 12 12 C 1.34774 * 119.99780 * 147.06467 * 11 10 9 13 13 O 1.21583 * 120.00297 * 355.19492 * 12 11 10 14 14 N 1.34775 * 119.99880 * 175.18917 * 12 11 10 15 15 C 1.46500 * 120.00110 * 0.02562 * 14 12 11 16 16 C 1.46505 * 120.00127 * 180.02562 * 14 12 11 17 17 C 1.50696 * 109.47214 * 90.00253 * 16 14 12 18 18 H 1.08004 * 119.99959 * 0.02562 * 17 16 14 19 19 C 1.37880 * 120.00254 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00083 * 179.97438 * 19 17 16 21 21 Si 1.86791 * 119.99711 * 359.97438 * 19 17 16 22 22 H 1.48510 * 109.47218 * 90.00110 * 21 19 17 23 23 H 1.48495 * 109.47307 * 209.99759 * 21 19 17 24 24 H 1.48498 * 109.47622 * 330.00066 * 21 19 17 25 25 C 1.38882 * 119.78160 * 0.27179 * 10 9 8 26 26 C 1.37970 * 119.86619 * 359.50340 * 25 10 9 27 27 C 1.38281 * 109.75419 * 17.19556 * 8 7 6 28 28 H 1.08999 * 109.47156 * 302.53628 * 1 2 3 29 29 H 1.09007 * 109.47401 * 62.53544 * 1 2 3 30 30 H 1.09003 * 109.47577 * 182.53783 * 1 2 3 31 31 H 1.08998 * 109.47239 * 183.95190 * 3 2 1 32 32 H 1.08996 * 109.47326 * 303.95512 * 3 2 1 33 33 H 1.09004 * 109.46979 * 63.95429 * 3 2 1 34 34 H 1.08995 * 110.82355 * 27.08363 * 6 4 2 35 35 H 1.08999 * 110.99445 * 263.60469 * 6 4 2 36 36 H 1.08995 * 110.30730 * 214.70400 * 7 6 4 37 37 H 1.09005 * 110.38530 * 92.59204 * 7 6 4 38 38 H 1.08003 * 119.91846 * 359.93305 * 9 8 7 39 39 H 0.97000 * 119.99951 * 327.06511 * 11 10 9 40 40 H 1.09006 * 109.47245 * 269.99670 * 15 14 12 41 41 H 1.09000 * 109.47330 * 29.99709 * 15 14 12 42 42 H 1.08999 * 109.47266 * 149.99820 * 15 14 12 43 43 H 1.08996 * 109.46862 * 329.99960 * 16 14 12 44 44 H 1.08998 * 109.46853 * 210.00395 * 16 14 12 45 45 H 0.97000 * 120.00138 * 179.97438 * 20 19 17 46 46 H 1.08002 * 120.06509 * 179.70558 * 25 10 9 47 47 H 1.08000 * 119.84550 * 180.28177 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9953 -0.7660 1.1376 5 1 3.0842 -0.7180 1.1537 6 6 1.4158 -0.2248 2.4617 7 6 1.2793 -1.5058 3.3118 8 6 1.1206 -2.6305 2.3109 9 6 0.6528 -3.9216 2.4813 10 6 0.5959 -4.7906 1.4015 11 7 0.1230 -6.0963 1.5753 12 6 -0.5489 -6.7077 0.5797 13 8 -0.8205 -6.0963 -0.4355 14 7 -0.9196 -7.9969 0.7095 15 6 -0.5927 -8.7336 1.9329 16 6 -1.6495 -8.6618 -0.3729 17 6 -0.6687 -9.3019 -1.3211 18 1 0.3923 -9.2219 -1.1358 19 6 -1.1257 -9.9897 -2.4252 20 7 -0.2697 -10.5479 -3.2530 21 14 -2.9607 -10.1287 -2.7453 22 1 -3.4052 -8.9854 -3.5826 23 1 -3.2444 -11.4017 -3.4552 24 1 -3.6916 -10.1091 -1.4528 25 6 1.0156 -4.3626 0.1487 26 6 1.4771 -3.0731 -0.0178 27 6 1.5321 -2.2053 1.0611 28 1 -0.3633 0.5527 0.8664 29 1 -0.3634 0.4740 -0.9119 30 1 -0.3634 -1.0266 0.0455 31 1 3.0828 1.3432 -0.0708 32 1 1.5899 1.9163 -0.8524 33 1 1.7044 1.8723 0.9233 34 1 0.4422 0.2372 2.2983 35 1 2.1035 0.4794 2.9300 36 1 0.3997 -1.4427 3.9524 37 1 2.1749 -1.6591 3.9140 38 1 0.3317 -4.2537 3.4576 39 1 0.2789 -6.5612 2.4122 40 1 0.3789 -9.2144 1.8189 41 1 -0.5595 -8.0426 2.7752 42 1 -1.3542 -9.4919 2.1149 43 1 -2.2491 -7.9277 -0.9111 44 1 -2.3025 -9.4274 0.0460 45 1 -0.5912 -11.0321 -4.0296 46 1 0.9778 -5.0369 -0.6941 47 1 1.7991 -2.7392 -0.9931 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455944681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:26 Heat of formation + Delta-G solvation = 2.331613 kcal Electronic energy + Delta-G solvation = -26599.394527 eV Core-core repulsion = 22974.868665 eV Total energy + Delta-G solvation = -3624.525863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.90729 -40.98270 -38.52971 -36.77770 -36.07428 -34.86267 -34.26041 -31.73747 -30.44558 -29.26577 -28.44198 -27.91325 -27.26635 -24.74009 -24.30450 -23.52044 -22.23518 -20.76052 -20.61968 -19.25584 -19.15943 -18.02657 -17.15301 -17.11449 -16.86472 -16.49488 -16.08384 -15.65038 -15.32712 -15.27181 -15.13101 -14.87539 -14.56130 -14.33415 -14.10449 -13.95530 -13.77507 -13.66837 -13.29674 -13.20443 -12.88686 -12.79943 -12.71622 -12.55972 -12.51443 -12.42522 -12.22984 -12.08354 -11.99984 -11.75936 -11.55246 -11.24983 -10.92707 -10.82763 -9.67605 -9.53624 -9.18252 -8.84834 -8.34146 -6.39554 0.32996 0.46121 1.32613 1.38175 1.45840 1.64724 2.13983 2.31282 2.81749 2.95751 3.01746 3.08358 3.59228 3.59778 4.06501 4.08948 4.20123 4.23073 4.28721 4.37548 4.40685 4.45277 4.54467 4.59858 4.64440 4.69599 4.74034 4.78912 4.81536 4.87413 4.91380 4.98124 5.02378 5.06885 5.08543 5.20038 5.28590 5.34838 5.37468 5.43675 5.55357 5.61581 5.67322 5.98967 6.08653 6.12721 6.21127 6.25521 6.61424 6.96894 7.22032 7.55643 8.83229 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020806 B = 0.002885 C = 0.002674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.464691 B = 9702.680407 C =10466.850311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.556 5.556 3 C 0.024 3.976 4 C 0.127 3.873 5 H 0.102 0.898 6 C -0.148 4.148 7 C -0.069 4.069 8 C -0.077 4.077 9 C -0.135 4.135 10 C 0.162 3.838 11 N -0.675 5.675 12 C 0.694 3.306 13 O -0.618 6.618 14 N -0.617 5.617 15 C 0.078 3.922 16 C 0.240 3.760 17 C -0.537 4.537 18 H 0.024 0.976 19 C 0.009 3.991 20 N -0.947 5.947 21 Si 0.951 3.049 22 H -0.278 1.278 23 H -0.274 1.274 24 H -0.233 1.233 25 C -0.153 4.153 26 C -0.074 4.074 27 C -0.116 4.116 28 H 0.044 0.956 29 H 0.068 0.932 30 H 0.046 0.954 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.040 0.960 34 H 0.076 0.924 35 H 0.099 0.901 36 H 0.088 0.912 37 H 0.101 0.899 38 H 0.152 0.848 39 H 0.420 0.580 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.090 0.910 43 H 0.020 0.980 44 H 0.060 0.940 45 H 0.269 0.731 46 H 0.095 0.905 47 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.421 21.857 19.488 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.279 5.279 3 C -0.123 4.123 4 C 0.019 3.981 5 H 0.120 0.880 6 C -0.187 4.187 7 C -0.106 4.106 8 C -0.078 4.078 9 C -0.156 4.156 10 C 0.067 3.933 11 N -0.326 5.326 12 C 0.395 3.605 13 O -0.498 6.498 14 N -0.351 5.351 15 C -0.064 4.064 16 C 0.117 3.883 17 C -0.576 4.576 18 H 0.042 0.958 19 C -0.189 4.189 20 N -0.587 5.587 21 Si 0.773 3.227 22 H -0.204 1.204 23 H -0.200 1.200 24 H -0.156 1.156 25 C -0.174 4.174 26 C -0.093 4.093 27 C -0.118 4.118 28 H 0.062 0.938 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.059 0.941 34 H 0.095 0.905 35 H 0.118 0.882 36 H 0.107 0.893 37 H 0.119 0.881 38 H 0.169 0.831 39 H 0.260 0.740 40 H 0.068 0.932 41 H 0.114 0.886 42 H 0.109 0.891 43 H 0.038 0.962 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.113 0.887 47 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 2.368 21.840 18.172 28.509 hybrid contribution -0.549 -0.735 -0.280 0.959 sum 1.819 21.105 17.892 27.728 Atomic orbital electron populations 1.22365 0.87540 1.01270 1.01159 1.62069 1.08247 1.15080 1.42454 1.22409 1.01040 0.87565 1.01291 1.21266 0.99742 0.88006 0.89066 0.88039 1.22975 1.02564 0.97847 0.95288 1.21015 1.03944 0.89800 0.95821 1.20654 0.96965 0.94187 0.96040 1.20385 1.04634 0.92147 0.98400 1.17556 0.96718 0.84298 0.94778 1.42570 1.57789 1.14205 1.17995 1.16097 0.79052 0.82204 0.83119 1.90872 1.61919 1.65873 1.31089 1.47115 1.59141 1.08965 1.19922 1.21935 1.02116 0.97695 0.84631 1.19323 0.91443 0.92039 0.85507 1.21575 0.93442 1.33361 1.09225 0.95773 1.25888 1.03647 0.94364 0.94967 1.70059 1.36982 1.36752 1.14940 0.85673 0.78956 0.77783 0.80251 1.20388 1.19950 1.15615 1.21016 1.01665 0.97486 0.97191 1.20422 0.98259 0.91585 0.99053 1.20522 1.01695 0.96292 0.93243 0.93798 0.91287 0.93481 0.90744 0.91190 0.94148 0.90538 0.88221 0.89303 0.88097 0.83064 0.73964 0.93170 0.88643 0.89133 0.96227 0.92259 0.92255 0.88690 0.86527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 8.90 127.69 1.14 1.62 16 2 N -0.56 -10.66 5.00 -923.69 -4.61 -15.27 16 3 C 0.02 0.32 9.42 127.69 1.20 1.53 16 4 C 0.13 2.30 2.96 44.84 0.13 2.43 16 5 H 0.10 1.69 8.13 -2.39 -0.02 1.67 16 6 C -0.15 -1.84 5.54 31.50 0.17 -1.66 16 7 C -0.07 -0.89 6.77 30.52 0.21 -0.68 16 8 C -0.08 -1.66 6.13 -19.60 -0.12 -1.78 16 9 C -0.14 -3.22 9.95 22.42 0.22 -3.00 16 10 C 0.16 5.26 6.28 38.12 0.24 5.50 16 11 N -0.67 -22.02 5.22 -317.28 -1.66 -23.68 16 12 C 0.69 30.30 8.03 179.06 1.44 31.74 16 13 O -0.62 -33.26 13.58 -3.98 -0.05 -33.32 16 14 N -0.62 -25.77 2.86 -869.32 -2.48 -28.25 16 15 C 0.08 2.21 10.29 127.77 1.31 3.52 16 16 C 0.24 11.86 4.27 85.63 0.37 12.22 16 17 C -0.54 -32.39 9.94 25.60 0.25 -32.14 16 18 H 0.02 1.64 8.06 -2.91 -0.02 1.61 16 19 C 0.01 0.55 5.47 84.66 0.46 1.01 16 20 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 21 Si 0.95 45.01 27.47 68.60 1.88 46.89 16 22 H -0.28 -13.34 7.11 99.48 0.71 -12.64 16 23 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 24 H -0.23 -9.73 6.54 99.48 0.65 -9.08 16 25 C -0.15 -5.79 8.66 22.36 0.19 -5.59 16 26 C -0.07 -2.36 9.75 22.28 0.22 -2.14 16 27 C -0.12 -2.87 4.35 -19.56 -0.08 -2.95 16 28 H 0.04 0.71 6.11 -2.39 -0.01 0.69 16 29 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.05 1.19 6.74 -2.39 -0.02 1.17 16 31 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.04 0.42 7.43 -2.38 -0.02 0.40 16 34 H 0.08 1.00 5.57 -2.39 -0.01 0.99 16 35 H 0.10 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.09 0.94 8.14 -2.39 -0.02 0.93 16 37 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.15 2.57 8.06 -2.91 -0.02 2.55 16 39 H 0.42 9.91 6.51 -92.71 -0.60 9.30 16 40 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 41 H 0.10 1.81 6.30 -2.39 -0.02 1.79 16 42 H 0.09 2.25 7.89 -2.39 -0.02 2.24 16 43 H 0.02 1.05 6.85 -2.39 -0.02 1.03 16 44 H 0.06 2.61 6.95 -2.39 -0.02 2.60 16 45 H 0.27 16.06 8.31 -92.71 -0.77 15.29 16 46 H 0.09 4.46 6.40 -2.91 -0.02 4.44 16 47 H 0.12 3.72 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -82.73 369.89 1.05 -81.68 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.32 Total: 23.16 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 7.36 Total: 9.63 kcal Atomic # 7 Polarization: -119.59 SS G_CDS: -8.46 Total: -128.05 kcal Atomic # 8 Polarization: -33.26 SS G_CDS: -0.05 Total: -33.32 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 1.88 Total: 46.89 kcal Total: -82.73 1.05 -81.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455944681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.013 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds