Wall clock time and date at job start Tue Mar 31 2020 11:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00023 * 2 1 4 4 C 1.46898 * 110.99848 * 123.95197 * 2 1 3 5 5 H 1.09006 * 110.34668 * 51.50338 * 4 2 1 6 6 C 1.54332 * 110.30522 * 289.37649 * 4 2 1 7 7 C 1.54347 * 102.40156 * 214.69451 * 6 4 2 8 8 C 1.51384 * 105.16776 * 26.37530 * 7 6 4 9 9 C 1.38384 * 130.33228 * 162.76724 * 8 7 6 10 10 C 1.38726 * 120.16640 * 180.02562 * 9 8 7 11 11 N 1.39941 * 120.10878 * 179.97438 * 10 9 8 12 12 C 1.34768 * 120.00566 * 145.76523 * 11 10 9 13 13 O 1.21592 * 119.99723 * 354.86427 * 12 11 10 14 14 N 1.34782 * 120.00402 * 174.85978 * 12 11 10 15 15 C 1.46492 * 119.99716 * 0.02562 * 14 12 11 16 16 C 1.46500 * 119.99813 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.46739 * 269.99315 * 16 14 12 18 18 H 1.08002 * 120.00195 * 0.02562 * 17 16 14 19 19 C 1.37881 * 119.99724 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00208 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47266 * 120.00129 * 21 19 17 24 24 H 1.48503 * 109.47331 * 239.99874 * 21 19 17 25 25 C 1.38882 * 119.78299 * 0.24359 * 10 9 8 26 26 C 1.37969 * 119.86583 * 359.45085 * 25 10 9 27 27 C 1.38279 * 109.75352 * 342.80047 * 8 7 6 28 28 H 1.09001 * 109.47028 * 294.67338 * 1 2 3 29 29 H 1.09000 * 109.47226 * 54.67347 * 1 2 3 30 30 H 1.09004 * 109.47286 * 174.67436 * 1 2 3 31 31 H 1.08993 * 109.47106 * 176.65373 * 3 2 1 32 32 H 1.08994 * 109.47158 * 296.65410 * 3 2 1 33 33 H 1.09005 * 109.46938 * 56.65450 * 3 2 1 34 34 H 1.09007 * 110.82232 * 332.92181 * 6 4 2 35 35 H 1.09000 * 110.82243 * 96.27316 * 6 4 2 36 36 H 1.08994 * 110.30024 * 267.45524 * 7 6 4 37 37 H 1.08994 * 110.30351 * 145.29648 * 7 6 4 38 38 H 1.08007 * 119.91281 * 0.02562 * 9 8 7 39 39 H 0.97001 * 119.99827 * 325.76507 * 11 10 9 40 40 H 1.09007 * 109.47407 * 269.99882 * 15 14 12 41 41 H 1.09001 * 109.47483 * 29.99780 * 15 14 12 42 42 H 1.08998 * 109.47169 * 150.00016 * 15 14 12 43 43 H 1.09006 * 109.46678 * 150.00133 * 16 14 12 44 44 H 1.08997 * 109.47589 * 29.99783 * 16 14 12 45 45 H 0.97001 * 120.00372 * 180.02562 * 20 19 17 46 46 H 1.08005 * 120.06421 * 179.74733 * 25 10 9 47 47 H 1.08002 * 119.84800 * 180.24514 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5373 -1.7544 1.1735 6 6 1.7390 -0.0087 2.4577 7 6 2.9894 -0.3620 3.2908 8 6 4.0723 -0.6561 2.2746 9 6 5.4470 -0.7149 2.4222 10 6 6.2534 -1.0063 1.3317 11 7 7.6434 -1.0650 1.4823 12 6 8.3633 -1.9442 0.7578 13 8 7.7984 -2.7496 0.0431 14 7 9.7094 -1.9307 0.8252 15 6 10.3899 -0.9607 1.6865 16 6 10.4918 -2.8862 0.0371 17 6 10.7155 -4.1390 0.8444 18 1 10.3145 -4.2159 1.8443 19 6 11.4320 -5.1870 0.3064 20 7 11.9207 -5.0931 -0.9109 21 14 11.7087 -6.7401 1.3068 22 1 11.0621 -6.5947 2.6357 23 1 11.1182 -7.9005 0.5927 24 1 13.1662 -6.9595 1.4874 25 6 5.6770 -1.2343 0.0889 26 6 4.3056 -1.1809 -0.0527 27 6 3.5011 -0.8882 1.0369 28 1 -0.3633 0.4290 0.9339 29 1 -0.3634 0.5942 -0.8384 30 1 -0.3634 -1.0233 -0.0954 31 1 3.0834 1.3430 0.0600 32 1 1.6953 1.8758 -0.9184 33 1 1.5983 1.9130 0.8585 34 1 1.6807 1.0657 2.2830 35 1 0.8321 -0.3705 2.9421 36 1 2.7983 -1.2418 3.9051 37 1 3.2776 0.4823 3.9170 38 1 5.8931 -0.5333 3.3890 39 1 8.0889 -0.4727 2.1082 40 1 10.5911 -0.0508 1.1209 41 1 9.7549 -0.7247 2.5405 42 1 11.3301 -1.3846 2.0391 43 1 11.4540 -2.4431 -0.2201 44 1 9.9502 -3.1340 -0.8757 45 1 12.4245 -5.8305 -1.2895 46 1 6.3008 -1.4575 -0.7641 47 1 3.8575 -1.3621 -1.0185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455944687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:30 Heat of formation + Delta-G solvation = 21.460038 kcal Electronic energy + Delta-G solvation = -26478.004997 eV Core-core repulsion = 22854.308605 eV Total energy + Delta-G solvation = -3623.696392 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.70120 -39.62514 -37.42033 -35.24324 -34.61487 -33.41351 -32.45069 -30.57804 -28.50749 -27.80244 -27.71795 -26.88935 -25.67302 -23.56812 -23.16032 -22.39956 -20.96664 -19.91195 -19.16933 -17.69424 -16.68831 -16.49929 -16.41939 -16.06611 -15.33000 -14.92477 -14.64540 -14.54499 -14.39763 -14.11945 -13.98676 -13.23478 -13.18463 -13.09515 -12.92520 -12.63040 -12.34925 -12.20122 -12.06415 -11.99397 -11.89361 -11.79073 -11.75731 -11.36730 -11.20402 -11.02333 -10.86974 -10.71484 -10.58469 -10.15103 -9.82123 -9.57394 -9.29069 -8.55246 -8.49948 -8.42989 -7.85542 -7.52569 -6.03612 -4.08118 1.50114 1.58589 3.19520 3.30682 3.38530 3.43233 3.65150 3.79811 4.10530 4.38185 4.42559 4.44479 4.55018 4.73846 4.97200 5.01133 5.09537 5.15287 5.17432 5.28037 5.30573 5.38789 5.48378 5.50036 5.53259 5.60767 5.65061 5.66191 5.79040 5.81117 5.84475 5.91863 5.98740 6.09608 6.20356 6.46972 6.51679 6.67931 6.82124 6.86208 6.89030 6.94048 7.33923 7.35209 7.50039 7.67772 7.94433 8.23493 8.57767 8.92926 9.24650 9.57348 11.04356 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.002645 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.793432 B =10583.870458 C =10721.739888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.536 5.536 3 C 0.021 3.979 4 C 0.128 3.872 5 H 0.093 0.907 6 C -0.157 4.157 7 C -0.074 4.074 8 C -0.080 4.080 9 C -0.147 4.147 10 C 0.189 3.811 11 N -0.697 5.697 12 C 0.697 3.303 13 O -0.566 6.566 14 N -0.613 5.613 15 C 0.084 3.916 16 C 0.259 3.741 17 C -0.526 4.526 18 H 0.057 0.943 19 C 0.061 3.939 20 N -0.895 5.895 21 Si 0.898 3.102 22 H -0.274 1.274 23 H -0.282 1.282 24 H -0.284 1.284 25 C -0.123 4.123 26 C -0.064 4.064 27 C -0.119 4.119 28 H 0.026 0.974 29 H 0.066 0.934 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.028 0.972 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.118 0.882 39 H 0.400 0.600 40 H 0.046 0.954 41 H 0.049 0.951 42 H 0.078 0.922 43 H 0.035 0.965 44 H 0.046 0.954 45 H 0.263 0.737 46 H 0.138 0.862 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.108 15.618 7.169 25.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.258 5.258 3 C -0.127 4.127 4 C 0.020 3.980 5 H 0.111 0.889 6 C -0.196 4.196 7 C -0.111 4.111 8 C -0.081 4.081 9 C -0.169 4.169 10 C 0.093 3.907 11 N -0.347 5.347 12 C 0.399 3.601 13 O -0.442 6.442 14 N -0.348 5.348 15 C -0.060 4.060 16 C 0.140 3.860 17 C -0.565 4.565 18 H 0.075 0.925 19 C -0.141 4.141 20 N -0.534 5.534 21 Si 0.726 3.274 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.210 1.210 25 C -0.144 4.144 26 C -0.083 4.083 27 C -0.120 4.120 28 H 0.044 0.956 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.047 0.953 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.136 0.864 39 H 0.237 0.763 40 H 0.064 0.936 41 H 0.068 0.932 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.156 0.844 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -19.112 14.662 6.010 24.827 hybrid contribution 0.338 -0.289 1.699 1.756 sum -18.774 14.374 7.709 24.870 Atomic orbital electron populations 1.22380 0.87516 1.02297 1.00338 1.62119 1.07481 1.14133 1.42035 1.22439 1.01400 0.88617 1.00245 1.21182 0.91772 0.97350 0.87709 0.88864 1.22999 0.98095 1.01560 0.96908 1.20907 0.92192 1.01610 0.96413 1.20128 0.92786 0.99826 0.95370 1.20153 0.92050 1.07460 0.97199 1.17373 0.82265 0.97864 0.93201 1.43000 1.04941 1.41021 1.45713 1.15916 0.82235 0.80926 0.81040 1.90918 1.69514 1.40233 1.43491 1.47513 1.03302 1.36867 1.47110 1.21589 0.98773 0.92386 0.93272 1.19264 0.89762 0.85791 0.91213 1.21490 1.33622 1.00114 1.01250 0.92471 1.24929 0.95593 0.98549 0.95051 1.69936 1.36359 1.32498 1.14608 0.86440 0.77610 0.83135 0.80215 1.19858 1.20840 1.20981 1.21175 0.94826 1.01453 0.96928 1.20464 0.92112 0.97532 0.98235 1.20149 0.94035 1.03944 0.93914 0.95574 0.91469 0.91381 0.90812 0.91615 0.95347 0.90385 0.90855 0.90237 0.90977 0.86350 0.76285 0.93597 0.93232 0.90288 0.94710 0.93616 0.92751 0.84393 0.85783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.45 60.07 0.57 0.74 16 2 N -0.54 -5.18 4.98 -243.31 -1.21 -6.39 16 3 C 0.02 0.19 8.85 60.06 0.53 0.72 16 4 C 0.13 1.30 2.94 -67.83 -0.20 1.10 16 5 H 0.09 0.95 8.12 -51.93 -0.42 0.53 16 6 C -0.16 -1.29 5.61 -25.33 -0.14 -1.43 16 7 C -0.07 -0.67 6.77 -26.84 -0.18 -0.85 16 8 C -0.08 -0.98 6.13 -104.22 -0.64 -1.62 16 9 C -0.15 -1.99 9.96 -39.35 -0.39 -2.38 16 10 C 0.19 3.06 6.25 -83.74 -0.52 2.53 16 11 N -0.70 -11.59 5.22 -14.25 -0.07 -11.67 16 12 C 0.70 15.09 8.01 -86.92 -0.70 14.40 16 13 O -0.57 -14.67 13.69 5.28 0.07 -14.60 16 14 N -0.61 -13.14 2.86 -188.74 -0.54 -13.68 16 15 C 0.08 1.31 10.25 59.84 0.61 1.92 16 16 C 0.26 6.81 5.16 -5.19 -0.03 6.78 16 17 C -0.53 -15.05 9.39 -34.44 -0.32 -15.37 16 18 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.71 13.29 55.43 0.74 -25.98 16 21 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.12 -2.08 8.65 -39.44 -0.34 -2.42 16 26 C -0.06 -0.94 9.87 -39.56 -0.39 -1.33 16 27 C -0.12 -1.51 4.38 -104.14 -0.46 -1.97 16 28 H 0.03 0.17 7.46 -51.93 -0.39 -0.21 16 29 H 0.07 0.45 8.13 -51.93 -0.42 0.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.77 6.88 -51.93 -0.36 0.41 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.03 0.23 6.12 -51.93 -0.32 -0.09 16 34 H 0.08 0.63 5.49 -51.93 -0.29 0.34 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 39 H 0.40 5.25 6.51 -40.82 -0.27 4.99 16 40 H 0.05 0.61 8.14 -51.92 -0.42 0.19 16 41 H 0.05 0.61 6.29 -51.93 -0.33 0.29 16 42 H 0.08 1.26 8.07 -51.93 -0.42 0.84 16 43 H 0.03 0.91 8.07 -51.93 -0.42 0.49 16 44 H 0.05 1.35 7.42 -51.93 -0.39 0.97 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.14 2.64 6.51 -52.48 -0.34 2.30 16 47 H 0.12 1.70 8.06 -52.49 -0.42 1.28 16 LS Contribution 374.17 15.07 5.64 5.64 Total: -1.00 -33.73 374.17 -10.37 -44.10 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -7.28 Total: 3.02 kcal Atomic # 6 Polarization: 5.16 SS G_CDS: -2.70 Total: 2.46 kcal Atomic # 7 Polarization: -56.63 SS G_CDS: -1.09 Total: -57.72 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.07 Total: -14.60 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.73 -10.37 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455944687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.565 kcal (2) G-P(sol) polarization free energy of solvation -33.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds