Wall clock time and date at job start Tue Mar 31 2020 11:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 111.00023 * 2 1 4 4 C 1.46898 * 110.99848 * 123.95197 * 2 1 3 5 5 H 1.09006 * 110.34668 * 51.50338 * 4 2 1 6 6 C 1.54332 * 110.30522 * 289.37649 * 4 2 1 7 7 C 1.54347 * 102.40156 * 214.69451 * 6 4 2 8 8 C 1.51384 * 105.16776 * 26.37530 * 7 6 4 9 9 C 1.38384 * 130.33228 * 162.76724 * 8 7 6 10 10 C 1.38726 * 120.16640 * 180.02562 * 9 8 7 11 11 N 1.39941 * 120.10878 * 179.97438 * 10 9 8 12 12 C 1.34768 * 120.00566 * 145.76523 * 11 10 9 13 13 O 1.21592 * 119.99723 * 354.86427 * 12 11 10 14 14 N 1.34782 * 120.00402 * 174.85978 * 12 11 10 15 15 C 1.46492 * 119.99716 * 0.02562 * 14 12 11 16 16 C 1.46500 * 119.99813 * 180.02562 * 14 12 11 17 17 C 1.50702 * 109.46739 * 269.99315 * 16 14 12 18 18 H 1.08002 * 120.00195 * 0.02562 * 17 16 14 19 19 C 1.37881 * 119.99724 * 180.02562 * 17 16 14 20 20 N 1.31509 * 120.00208 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99798 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47297 * 359.97438 * 21 19 17 23 23 H 1.48496 * 109.47266 * 120.00129 * 21 19 17 24 24 H 1.48503 * 109.47331 * 239.99874 * 21 19 17 25 25 C 1.38882 * 119.78299 * 0.24359 * 10 9 8 26 26 C 1.37969 * 119.86583 * 359.45085 * 25 10 9 27 27 C 1.38279 * 109.75352 * 342.80047 * 8 7 6 28 28 H 1.09001 * 109.47028 * 294.67338 * 1 2 3 29 29 H 1.09000 * 109.47226 * 54.67347 * 1 2 3 30 30 H 1.09004 * 109.47286 * 174.67436 * 1 2 3 31 31 H 1.08993 * 109.47106 * 176.65373 * 3 2 1 32 32 H 1.08994 * 109.47158 * 296.65410 * 3 2 1 33 33 H 1.09005 * 109.46938 * 56.65450 * 3 2 1 34 34 H 1.09007 * 110.82232 * 332.92181 * 6 4 2 35 35 H 1.09000 * 110.82243 * 96.27316 * 6 4 2 36 36 H 1.08994 * 110.30024 * 267.45524 * 7 6 4 37 37 H 1.08994 * 110.30351 * 145.29648 * 7 6 4 38 38 H 1.08007 * 119.91281 * 0.02562 * 9 8 7 39 39 H 0.97001 * 119.99827 * 325.76507 * 11 10 9 40 40 H 1.09007 * 109.47407 * 269.99882 * 15 14 12 41 41 H 1.09001 * 109.47483 * 29.99780 * 15 14 12 42 42 H 1.08998 * 109.47169 * 150.00016 * 15 14 12 43 43 H 1.09006 * 109.46678 * 150.00133 * 16 14 12 44 44 H 1.08997 * 109.47589 * 29.99783 * 16 14 12 45 45 H 0.97001 * 120.00372 * 180.02562 * 20 19 17 46 46 H 1.08005 * 120.06421 * 179.74733 * 25 10 9 47 47 H 1.08002 * 119.84800 * 180.24514 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 1 1.5373 -1.7544 1.1735 6 6 1.7390 -0.0087 2.4577 7 6 2.9894 -0.3620 3.2908 8 6 4.0723 -0.6561 2.2746 9 6 5.4470 -0.7149 2.4222 10 6 6.2534 -1.0063 1.3317 11 7 7.6434 -1.0650 1.4823 12 6 8.3633 -1.9442 0.7578 13 8 7.7984 -2.7496 0.0431 14 7 9.7094 -1.9307 0.8252 15 6 10.3899 -0.9607 1.6865 16 6 10.4918 -2.8862 0.0371 17 6 10.7155 -4.1390 0.8444 18 1 10.3145 -4.2159 1.8443 19 6 11.4320 -5.1870 0.3064 20 7 11.9207 -5.0931 -0.9109 21 14 11.7087 -6.7401 1.3068 22 1 11.0621 -6.5947 2.6357 23 1 11.1182 -7.9005 0.5927 24 1 13.1662 -6.9595 1.4874 25 6 5.6770 -1.2343 0.0889 26 6 4.3056 -1.1809 -0.0527 27 6 3.5011 -0.8882 1.0369 28 1 -0.3633 0.4290 0.9339 29 1 -0.3634 0.5942 -0.8384 30 1 -0.3634 -1.0233 -0.0954 31 1 3.0834 1.3430 0.0600 32 1 1.6953 1.8758 -0.9184 33 1 1.5983 1.9130 0.8585 34 1 1.6807 1.0657 2.2830 35 1 0.8321 -0.3705 2.9421 36 1 2.7983 -1.2418 3.9051 37 1 3.2776 0.4823 3.9170 38 1 5.8931 -0.5333 3.3890 39 1 8.0889 -0.4727 2.1082 40 1 10.5911 -0.0508 1.1209 41 1 9.7549 -0.7247 2.5405 42 1 11.3301 -1.3846 2.0391 43 1 11.4540 -2.4431 -0.2201 44 1 9.9502 -3.1340 -0.8757 45 1 12.4245 -5.8305 -1.2895 46 1 6.3008 -1.4575 -0.7641 47 1 3.8575 -1.3621 -1.0185 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455944687.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:42:30 Heat of formation + Delta-G solvation = -0.602404 kcal Electronic energy + Delta-G solvation = -26478.961696 eV Core-core repulsion = 22854.308605 eV Total energy + Delta-G solvation = -3624.653091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.87342 -40.94845 -38.50228 -36.72667 -36.04482 -34.88906 -34.21249 -31.67734 -29.95051 -29.17449 -28.42610 -27.89826 -27.21545 -25.05771 -24.30038 -23.51048 -22.29581 -20.74471 -20.61244 -19.22506 -18.68614 -17.99438 -17.19311 -17.10203 -16.73408 -16.67076 -15.90844 -15.80610 -15.31556 -15.24898 -14.96426 -14.82826 -14.46019 -14.34690 -14.04389 -13.88810 -13.63733 -13.51368 -13.22771 -13.14100 -12.93769 -12.76302 -12.70875 -12.63420 -12.53672 -12.46300 -12.23871 -12.17896 -11.85462 -11.73962 -11.68791 -11.16939 -10.90131 -10.65212 -9.67394 -9.52511 -9.16522 -8.85470 -8.22522 -6.37458 0.34695 0.47142 1.35515 1.38395 1.49672 1.70663 2.14877 2.38487 2.83534 3.02386 3.07415 3.10682 3.57755 3.60390 4.07269 4.09425 4.20878 4.24599 4.30087 4.40097 4.42954 4.47331 4.57649 4.63084 4.66113 4.75297 4.79045 4.81518 4.82427 4.94308 4.99045 5.02871 5.08484 5.10587 5.17410 5.22254 5.28618 5.35683 5.40837 5.53559 5.63426 5.68067 5.77818 6.04727 6.08370 6.09755 6.15682 6.21746 6.71190 7.03395 7.29605 7.61436 8.84248 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.022652 B = 0.002645 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.793432 B =10583.870458 C =10721.739888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.554 5.554 3 C 0.024 3.976 4 C 0.127 3.873 5 H 0.094 0.906 6 C -0.146 4.146 7 C -0.070 4.070 8 C -0.079 4.079 9 C -0.139 4.139 10 C 0.161 3.839 11 N -0.676 5.676 12 C 0.693 3.307 13 O -0.620 6.620 14 N -0.620 5.620 15 C 0.078 3.922 16 C 0.275 3.725 17 C -0.541 4.541 18 H 0.051 0.949 19 C 0.007 3.993 20 N -0.928 5.928 21 Si 0.968 3.032 22 H -0.269 1.269 23 H -0.282 1.282 24 H -0.267 1.267 25 C -0.148 4.148 26 C -0.073 4.073 27 C -0.116 4.116 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.053 0.947 32 H 0.071 0.929 33 H 0.043 0.957 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.146 0.854 39 H 0.419 0.581 40 H 0.071 0.929 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.031 0.969 44 H -0.001 1.001 45 H 0.268 0.732 46 H 0.101 0.899 47 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.973 16.751 10.484 28.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.277 5.277 3 C -0.124 4.124 4 C 0.019 3.981 5 H 0.112 0.888 6 C -0.185 4.185 7 C -0.108 4.108 8 C -0.080 4.080 9 C -0.160 4.160 10 C 0.066 3.934 11 N -0.327 5.327 12 C 0.395 3.605 13 O -0.500 6.500 14 N -0.355 5.355 15 C -0.064 4.064 16 C 0.153 3.847 17 C -0.580 4.580 18 H 0.069 0.931 19 C -0.192 4.192 20 N -0.568 5.568 21 Si 0.793 3.207 22 H -0.193 1.193 23 H -0.208 1.208 24 H -0.192 1.192 25 C -0.169 4.169 26 C -0.092 4.092 27 C -0.117 4.117 28 H 0.058 0.942 29 H 0.091 0.909 30 H 0.088 0.912 31 H 0.072 0.928 32 H 0.090 0.910 33 H 0.062 0.938 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.164 0.836 39 H 0.259 0.741 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.094 0.906 43 H 0.049 0.951 44 H 0.017 0.983 45 H 0.077 0.923 46 H 0.119 0.881 47 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.986 15.873 9.376 27.933 hybrid contribution 0.801 -0.565 0.617 1.158 sum -20.185 15.308 9.993 27.232 Atomic orbital electron populations 1.22411 0.85920 1.02730 1.01313 1.62068 1.08993 1.14465 1.42156 1.22393 1.00111 0.88599 1.01259 1.21225 0.89613 0.98051 0.89250 0.88785 1.22975 0.98627 1.01620 0.95296 1.21010 0.90968 1.02951 0.95826 1.20622 0.93040 0.98069 0.96241 1.20390 0.92433 1.05943 0.97202 1.17570 0.82012 0.99938 0.93860 1.42590 1.05118 1.40036 1.44940 1.16096 0.82311 0.81154 0.80985 1.90876 1.70640 1.42700 1.45803 1.47376 1.03401 1.37154 1.47567 1.21905 0.98897 0.91701 0.93922 1.18723 0.89262 0.86611 0.90087 1.21726 1.33767 1.01372 1.01152 0.93087 1.25848 0.95186 1.01947 0.96170 1.70048 1.36867 1.33723 1.16135 0.85361 0.78313 0.78513 0.78557 1.19299 1.20835 1.19168 1.20996 0.95640 1.03666 0.96619 1.20449 0.91426 0.98159 0.99163 1.20522 0.95840 1.01975 0.93388 0.94225 0.90870 0.91216 0.92850 0.91048 0.93844 0.89842 0.88654 0.89001 0.88930 0.83613 0.74100 0.91012 0.89548 0.90636 0.95081 0.98286 0.92345 0.88117 0.86080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.45 127.69 1.21 1.50 16 2 N -0.55 -9.77 4.98 -923.71 -4.60 -14.37 16 3 C 0.02 0.39 8.85 127.69 1.13 1.52 16 4 C 0.13 2.30 2.94 44.84 0.13 2.43 16 5 H 0.09 1.71 8.12 -2.38 -0.02 1.70 16 6 C -0.15 -1.83 5.61 31.50 0.18 -1.65 16 7 C -0.07 -0.99 6.77 30.52 0.21 -0.78 16 8 C -0.08 -1.75 6.13 -19.60 -0.12 -1.87 16 9 C -0.14 -3.49 9.96 22.42 0.22 -3.27 16 10 C 0.16 5.28 6.25 38.12 0.24 5.52 16 11 N -0.68 -22.56 5.22 -317.28 -1.66 -24.22 16 12 C 0.69 31.25 8.01 179.06 1.43 32.68 16 13 O -0.62 -34.52 13.69 -4.01 -0.05 -34.57 16 14 N -0.62 -27.34 2.86 -869.31 -2.48 -29.83 16 15 C 0.08 2.33 10.25 127.77 1.31 3.64 16 16 C 0.27 15.18 5.16 85.63 0.44 15.62 16 17 C -0.54 -31.87 9.39 25.60 0.24 -31.63 16 18 H 0.05 3.00 7.81 -2.91 -0.02 2.97 16 19 C 0.01 0.44 5.46 84.66 0.46 0.90 16 20 N -0.93 -56.86 13.29 21.45 0.28 -56.57 16 21 Si 0.97 45.76 29.54 68.60 2.03 47.78 16 22 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 23 H -0.28 -13.28 7.11 99.48 0.71 -12.58 16 24 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 25 C -0.15 -5.39 8.65 22.36 0.19 -5.20 16 26 C -0.07 -2.23 9.87 22.29 0.22 -2.01 16 27 C -0.12 -2.85 4.38 -19.55 -0.09 -2.93 16 28 H 0.04 0.39 7.46 -2.39 -0.02 0.37 16 29 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 1.08 6.88 -2.39 -0.02 1.06 16 32 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 33 H 0.04 0.57 6.12 -2.38 -0.01 0.55 16 34 H 0.08 0.99 5.49 -2.38 -0.01 0.97 16 35 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.15 2.81 8.06 -2.91 -0.02 2.79 16 39 H 0.42 10.31 6.51 -92.71 -0.60 9.70 16 40 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 41 H 0.09 1.92 6.29 -2.39 -0.02 1.90 16 42 H 0.07 2.33 8.07 -2.39 -0.02 2.31 16 43 H 0.03 1.71 8.07 -2.38 -0.02 1.69 16 44 H 0.00 -0.06 7.42 -2.39 -0.02 -0.08 16 45 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 46 H 0.10 4.35 6.51 -2.91 -0.02 4.33 16 47 H 0.12 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -78.16 374.17 1.29 -76.86 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: 0.37 Total: 20.43 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 7.41 Total: 14.49 kcal Atomic # 7 Polarization: -116.53 SS G_CDS: -8.46 Total: -124.99 kcal Atomic # 8 Polarization: -34.52 SS G_CDS: -0.05 Total: -34.57 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -78.16 1.29 -76.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455944687.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.259 kcal (2) G-P(sol) polarization free energy of solvation -78.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds