Wall clock time and date at job start Tue Mar 31 2020 11:24:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.39932 * 110.99637 * 2 1 4 4 C 1.38707 * 120.09866 * 64.23782 * 3 2 1 5 5 C 1.38225 * 119.99344 * 180.31371 * 4 3 2 6 6 C 1.38272 * 120.19186 * 359.67557 * 5 4 3 7 7 C 1.38248 * 120.19608 * 0.02625 * 6 5 4 8 8 C 1.38655 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.40201 * 120.09535 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99917 * 34.62946 * 9 8 7 11 11 O 1.21592 * 120.00112 * 355.55099 * 10 9 8 12 12 N 1.34782 * 119.99929 * 175.55327 * 10 9 8 13 13 C 1.46494 * 119.99941 * 179.72548 * 12 10 9 14 14 C 1.50709 * 109.47093 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00091 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00052 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47249 * 60.00299 * 18 16 14 20 20 H 1.48501 * 109.47132 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47207 * 300.00066 * 18 16 14 22 22 C 1.46899 * 111.00209 * 123.95523 * 2 1 3 23 23 C 1.54266 * 110.03330 * 173.21219 * 22 2 1 24 24 C 1.54886 * 104.19621 * 217.10725 * 23 22 2 25 25 C 1.54882 * 102.74982 * 37.94088 * 24 23 22 26 26 C 1.53872 * 110.03053 * 56.04596 * 22 2 1 27 27 H 1.08997 * 109.47329 * 59.99376 * 1 2 3 28 28 H 1.09003 * 109.47237 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47346 * 299.99944 * 1 2 3 30 30 H 1.08007 * 120.00181 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.90414 * 179.69998 * 5 4 3 32 32 H 1.08003 * 119.90382 * 180.02562 * 6 5 4 33 33 H 1.07994 * 119.99879 * 180.02562 * 7 6 5 34 34 H 0.96997 * 120.00194 * 214.63699 * 9 8 7 35 35 H 0.97004 * 119.99974 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.47269 * 299.99601 * 13 12 10 37 37 H 1.08994 * 109.47353 * 60.00042 * 13 12 10 38 38 H 0.96993 * 120.00310 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.01397 * 294.65392 * 22 2 1 40 40 H 1.09005 * 110.48435 * 335.78805 * 23 22 2 41 41 H 1.09002 * 110.48243 * 98.42661 * 23 22 2 42 42 H 1.09003 * 110.75138 * 279.62684 * 24 23 22 43 43 H 1.08995 * 110.75590 * 156.25727 * 24 23 22 44 44 H 1.09001 * 110.48708 * 203.38042 * 25 24 23 45 45 H 1.09006 * 110.48360 * 80.73761 * 25 24 23 46 46 H 1.08997 * 110.03391 * 238.56762 * 26 22 2 47 47 H 1.09001 * 110.03569 * 0.02562 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9703 1.3064 0.0000 4 6 1.7326 2.1427 1.0808 5 6 2.2234 3.4349 1.0756 6 6 2.9574 3.8957 -0.0018 7 6 3.2043 3.0669 -1.0804 8 6 2.7159 1.7692 -1.0838 9 7 2.9655 0.9269 -2.1764 10 6 4.1337 1.0157 -2.8426 11 8 4.9373 1.8794 -2.5483 12 7 4.4112 0.1471 -3.8352 13 6 5.6783 0.2474 -4.5633 14 6 5.7413 -0.8321 -5.6131 15 1 4.9197 -1.5239 -5.7262 16 6 6.8477 -0.9365 -6.4291 17 7 7.8484 -0.0943 -6.2911 18 14 6.9260 -2.2749 -7.7298 19 1 5.7952 -2.1104 -8.6781 20 1 8.2105 -2.1732 -8.4680 21 1 6.8350 -3.6056 -7.0769 22 6 1.9954 -0.7660 1.1375 23 6 3.5284 -0.8955 1.0232 24 6 3.8288 -2.3230 1.5439 25 6 2.6400 -3.1464 0.9893 26 6 1.4305 -2.1971 1.1159 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.1594 1.7860 1.9238 31 1 2.0333 4.0864 1.9158 32 1 3.3391 4.9060 -0.0007 33 1 3.7783 3.4299 -1.9200 34 1 2.2975 0.2803 -2.4529 35 1 3.7702 -0.5422 -4.0697 36 1 5.7461 1.2244 -5.0419 37 1 6.5081 0.1255 -3.8672 38 1 8.6270 -0.1680 -6.8649 39 1 1.7303 -0.2740 2.0733 40 1 3.8434 -0.7940 -0.0153 41 1 4.0217 -0.1502 1.6471 42 1 3.8374 -2.3428 2.6337 43 1 4.7734 -2.6898 1.1423 44 1 2.4850 -4.0437 1.5884 45 1 2.8116 -3.4085 -0.0548 46 1 0.8920 -2.4000 2.0416 47 1 0.7661 -2.3234 0.2611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000488958552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:51 Heat of formation + Delta-G solvation = 1.239656 kcal Electronic energy + Delta-G solvation = -27134.474754 eV Core-core repulsion = 23509.901541 eV Total energy + Delta-G solvation = -3624.573213 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.63239 -39.20550 -37.83607 -35.22304 -34.50646 -33.95286 -32.32102 -30.09699 -29.44677 -28.68162 -27.78662 -26.91472 -25.08139 -23.30928 -22.25198 -21.41532 -20.60495 -20.12632 -19.47776 -18.08368 -17.65924 -16.78788 -15.99574 -15.73347 -15.64083 -15.19160 -14.89754 -14.52817 -14.39710 -14.21038 -13.78383 -13.68316 -13.42808 -13.21666 -13.05739 -12.60589 -12.31151 -11.99611 -11.96044 -11.72762 -11.66099 -11.28281 -11.14474 -11.07856 -10.97525 -10.95387 -10.88092 -10.84879 -10.62785 -10.29117 -9.98637 -9.39037 -9.36138 -8.72793 -8.61998 -8.59141 -8.03510 -7.59790 -6.14959 -4.21661 1.38509 1.53968 3.26123 3.26608 3.31859 3.35624 3.65813 3.72083 4.08132 4.33488 4.44651 4.55894 4.84413 4.96460 5.00059 5.08240 5.16929 5.21252 5.21574 5.30028 5.37184 5.41068 5.43826 5.54039 5.60268 5.63367 5.69463 5.79537 5.81978 5.86192 5.97659 6.04048 6.10065 6.15037 6.35447 6.37878 6.43424 6.65181 6.81323 6.89778 7.04811 7.13202 7.45032 7.49728 7.55480 7.56659 7.88986 8.03043 8.73763 8.89042 9.26944 9.46079 10.95213 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003662 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.006932 B = 7645.197485 C = 9037.497845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.496 5.496 3 C 0.049 3.951 4 C -0.132 4.132 5 C -0.140 4.140 6 C -0.103 4.103 7 C -0.120 4.120 8 C 0.208 3.792 9 N -0.682 5.682 10 C 0.691 3.309 11 O -0.587 6.587 12 N -0.722 5.722 13 C 0.267 3.733 14 C -0.543 4.543 15 H 0.062 0.938 16 C 0.065 3.935 17 N -0.885 5.885 18 Si 0.904 3.096 19 H -0.275 1.275 20 H -0.285 1.285 21 H -0.275 1.275 22 C 0.088 3.912 23 C -0.115 4.115 24 C -0.124 4.124 25 C -0.120 4.120 26 C -0.121 4.121 27 H 0.068 0.932 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.115 0.885 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.147 0.853 34 H 0.407 0.593 35 H 0.388 0.612 36 H 0.026 0.974 37 H 0.026 0.974 38 H 0.266 0.734 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.060 0.940 42 H 0.062 0.938 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.069 0.931 46 H 0.061 0.939 47 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.186 -0.721 16.766 23.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.217 5.217 3 C -0.047 4.047 4 C -0.152 4.152 5 C -0.160 4.160 6 C -0.122 4.122 7 C -0.141 4.141 8 C 0.109 3.891 9 N -0.329 5.329 10 C 0.391 3.609 11 O -0.465 6.465 12 N -0.373 5.373 13 C 0.146 3.854 14 C -0.581 4.581 15 H 0.080 0.920 16 C -0.139 4.139 17 N -0.523 5.523 18 Si 0.731 3.269 19 H -0.201 1.201 20 H -0.211 1.211 21 H -0.201 1.201 22 C -0.019 4.019 23 C -0.153 4.153 24 C -0.162 4.162 25 C -0.158 4.158 26 C -0.159 4.159 27 H 0.087 0.913 28 H 0.093 0.907 29 H 0.046 0.954 30 H 0.133 0.867 31 H 0.134 0.866 32 H 0.140 0.860 33 H 0.164 0.836 34 H 0.243 0.757 35 H 0.221 0.779 36 H 0.044 0.956 37 H 0.044 0.956 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.079 0.921 42 H 0.081 0.919 43 H 0.087 0.913 44 H 0.080 0.920 45 H 0.088 0.912 46 H 0.080 0.920 47 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -15.017 -0.213 16.399 22.237 hybrid contribution -0.760 -0.919 -0.156 1.202 sum -15.777 -1.132 16.243 22.672 Atomic orbital electron populations 1.22521 0.86596 1.02236 1.01022 1.59716 1.07579 1.10613 1.43787 1.18427 1.03157 0.89740 0.93395 1.21247 1.01348 0.94680 0.97954 1.20881 1.00405 0.95713 0.98985 1.21069 0.97984 0.99661 0.93489 1.21439 1.00630 0.91540 1.00505 1.17381 0.96036 0.89192 0.86451 1.42671 1.18598 1.40282 1.31358 1.16168 0.81244 0.83069 0.80390 1.90864 1.48640 1.37631 1.69395 1.45748 1.23533 1.32777 1.35276 1.19014 0.78630 0.97442 0.90273 1.21177 1.04021 1.15186 1.17719 0.91963 1.24929 0.95214 0.96327 0.97448 1.69964 1.07067 1.36238 1.39006 0.86475 0.77437 0.81754 0.81233 1.20081 1.21082 1.20080 1.22362 0.95567 0.93362 0.90566 1.22385 0.93671 0.96505 1.02713 1.22459 0.98549 0.95211 0.99945 1.22307 0.94533 0.97466 1.01501 1.22306 0.98285 0.93484 1.01802 0.91277 0.90655 0.95376 0.86707 0.86564 0.85989 0.83560 0.75740 0.77940 0.95617 0.95594 0.92394 0.93797 0.90081 0.92087 0.91898 0.91293 0.91984 0.91182 0.92040 0.90464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.07 60.06 0.54 0.75 16 2 N -0.50 -5.51 4.02 -169.90 -0.68 -6.20 16 3 C 0.05 0.64 3.98 -83.54 -0.33 0.31 16 4 C -0.13 -1.54 8.57 -39.41 -0.34 -1.88 16 5 C -0.14 -1.62 10.04 -39.57 -0.40 -2.02 16 6 C -0.10 -1.35 10.04 -39.56 -0.40 -1.75 16 7 C -0.12 -1.92 8.70 -39.42 -0.34 -2.27 16 8 C 0.21 3.21 6.33 -83.42 -0.53 2.68 16 9 N -0.68 -10.98 5.18 -14.07 -0.07 -11.05 16 10 C 0.69 14.24 8.41 -86.91 -0.73 13.51 16 11 O -0.59 -14.25 13.76 5.28 0.07 -14.17 16 12 N -0.72 -15.34 5.55 -66.41 -0.37 -15.71 16 13 C 0.27 7.09 5.43 -5.19 -0.03 7.06 16 14 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 15 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 16 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.05 13.29 55.43 0.74 -25.31 16 18 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 19 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 20 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 22 C 0.09 0.94 2.45 -66.60 -0.16 0.77 16 23 C -0.11 -1.43 5.72 -25.07 -0.14 -1.57 16 24 C -0.12 -1.31 6.91 -24.74 -0.17 -1.48 16 25 C -0.12 -1.15 6.83 -25.07 -0.17 -1.32 16 26 C -0.12 -1.08 5.90 -25.61 -0.15 -1.24 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.07 0.57 5.97 -51.93 -0.31 0.26 16 29 H 0.03 0.24 7.36 -51.93 -0.38 -0.15 16 30 H 0.11 1.14 7.03 -52.48 -0.37 0.78 16 31 H 0.12 1.06 8.06 -52.49 -0.42 0.63 16 32 H 0.12 1.35 8.06 -52.48 -0.42 0.92 16 33 H 0.15 2.70 6.19 -52.49 -0.32 2.37 16 34 H 0.41 5.60 8.52 -40.82 -0.35 5.25 16 35 H 0.39 7.11 8.34 -40.82 -0.34 6.77 16 36 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 39 H 0.04 0.46 7.11 -51.93 -0.37 0.09 16 40 H 0.08 1.25 8.03 -51.93 -0.42 0.83 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 42 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 47 H 0.08 0.68 6.10 -51.93 -0.32 0.36 16 LS Contribution 375.71 15.07 5.66 5.66 Total: -1.00 -31.15 375.71 -10.80 -41.95 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -7.36 Total: 10.77 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.77 Total: -1.74 kcal Atomic # 7 Polarization: -57.88 SS G_CDS: -0.39 Total: -58.27 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: 0.07 Total: -14.17 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.15 -10.80 -41.95 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488958552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.187 kcal (2) G-P(sol) polarization free energy of solvation -31.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds