Wall clock time and date at job start Tue Mar 31 2020 11:24:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.39932 * 110.99637 * 2 1 4 4 C 1.38707 * 120.09866 * 64.23782 * 3 2 1 5 5 C 1.38225 * 119.99344 * 180.31371 * 4 3 2 6 6 C 1.38272 * 120.19186 * 359.67557 * 5 4 3 7 7 C 1.38248 * 120.19608 * 0.02625 * 6 5 4 8 8 C 1.38655 * 120.00204 * 359.97438 * 7 6 5 9 9 N 1.40201 * 120.09535 * 180.02562 * 8 7 6 10 10 C 1.34777 * 119.99917 * 34.62946 * 9 8 7 11 11 O 1.21592 * 120.00112 * 355.55099 * 10 9 8 12 12 N 1.34782 * 119.99929 * 175.55327 * 10 9 8 13 13 C 1.46494 * 119.99941 * 179.72548 * 12 10 9 14 14 C 1.50709 * 109.47093 * 179.97438 * 13 12 10 15 15 H 1.08000 * 119.99854 * 359.97438 * 14 13 12 16 16 C 1.37877 * 120.00091 * 179.97438 * 14 13 12 17 17 N 1.31517 * 120.00052 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00006 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47249 * 60.00299 * 18 16 14 20 20 H 1.48501 * 109.47132 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47207 * 300.00066 * 18 16 14 22 22 C 1.46899 * 111.00209 * 123.95523 * 2 1 3 23 23 C 1.54266 * 110.03330 * 173.21219 * 22 2 1 24 24 C 1.54886 * 104.19621 * 217.10725 * 23 22 2 25 25 C 1.54882 * 102.74982 * 37.94088 * 24 23 22 26 26 C 1.53872 * 110.03053 * 56.04596 * 22 2 1 27 27 H 1.08997 * 109.47329 * 59.99376 * 1 2 3 28 28 H 1.09003 * 109.47237 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.47346 * 299.99944 * 1 2 3 30 30 H 1.08007 * 120.00181 * 359.97438 * 4 3 2 31 31 H 1.08000 * 119.90414 * 179.69998 * 5 4 3 32 32 H 1.08003 * 119.90382 * 180.02562 * 6 5 4 33 33 H 1.07994 * 119.99879 * 180.02562 * 7 6 5 34 34 H 0.96997 * 120.00194 * 214.63699 * 9 8 7 35 35 H 0.97004 * 119.99974 * 359.97438 * 12 10 9 36 36 H 1.08997 * 109.47269 * 299.99601 * 13 12 10 37 37 H 1.08994 * 109.47353 * 60.00042 * 13 12 10 38 38 H 0.96993 * 120.00310 * 179.97438 * 17 16 14 39 39 H 1.08998 * 110.01397 * 294.65392 * 22 2 1 40 40 H 1.09005 * 110.48435 * 335.78805 * 23 22 2 41 41 H 1.09002 * 110.48243 * 98.42661 * 23 22 2 42 42 H 1.09003 * 110.75138 * 279.62684 * 24 23 22 43 43 H 1.08995 * 110.75590 * 156.25727 * 24 23 22 44 44 H 1.09001 * 110.48708 * 203.38042 * 25 24 23 45 45 H 1.09006 * 110.48360 * 80.73761 * 25 24 23 46 46 H 1.08997 * 110.03391 * 238.56762 * 26 22 2 47 47 H 1.09001 * 110.03569 * 0.02562 * 26 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9703 1.3064 0.0000 4 6 1.7326 2.1427 1.0808 5 6 2.2234 3.4349 1.0756 6 6 2.9574 3.8957 -0.0018 7 6 3.2043 3.0669 -1.0804 8 6 2.7159 1.7692 -1.0838 9 7 2.9655 0.9269 -2.1764 10 6 4.1337 1.0157 -2.8426 11 8 4.9373 1.8794 -2.5483 12 7 4.4112 0.1471 -3.8352 13 6 5.6783 0.2474 -4.5633 14 6 5.7413 -0.8321 -5.6131 15 1 4.9197 -1.5239 -5.7262 16 6 6.8477 -0.9365 -6.4291 17 7 7.8484 -0.0943 -6.2911 18 14 6.9260 -2.2749 -7.7298 19 1 5.7952 -2.1104 -8.6781 20 1 8.2105 -2.1732 -8.4680 21 1 6.8350 -3.6056 -7.0769 22 6 1.9954 -0.7660 1.1375 23 6 3.5284 -0.8955 1.0232 24 6 3.8288 -2.3230 1.5439 25 6 2.6400 -3.1464 0.9893 26 6 1.4305 -2.1971 1.1159 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.1594 1.7860 1.9238 31 1 2.0333 4.0864 1.9158 32 1 3.3391 4.9060 -0.0007 33 1 3.7783 3.4299 -1.9200 34 1 2.2975 0.2803 -2.4529 35 1 3.7702 -0.5422 -4.0697 36 1 5.7461 1.2244 -5.0419 37 1 6.5081 0.1255 -3.8672 38 1 8.6270 -0.1680 -6.8649 39 1 1.7303 -0.2740 2.0733 40 1 3.8434 -0.7940 -0.0153 41 1 4.0217 -0.1502 1.6471 42 1 3.8374 -2.3428 2.6337 43 1 4.7734 -2.6898 1.1423 44 1 2.4850 -4.0437 1.5884 45 1 2.8116 -3.4085 -0.0548 46 1 0.8920 -2.4000 2.0416 47 1 0.7661 -2.3234 0.2611 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000488958552.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:24:50 Heat of formation + Delta-G solvation = -18.603788 kcal Electronic energy + Delta-G solvation = -27135.335231 eV Core-core repulsion = 23509.901541 eV Total energy + Delta-G solvation = -3625.433690 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.82769 -40.55362 -38.89276 -36.33218 -36.05337 -35.58401 -34.34129 -31.09712 -30.69416 -29.62500 -28.86407 -28.51335 -25.94753 -25.04607 -23.67569 -22.55592 -21.75517 -21.45664 -20.35358 -19.74443 -18.86972 -17.98563 -17.78995 -16.84105 -16.66432 -16.55462 -16.48032 -15.99520 -15.61671 -15.35608 -15.03243 -14.90933 -14.66029 -14.27297 -14.15634 -14.03110 -13.95597 -13.52740 -13.07098 -12.91896 -12.81595 -12.68138 -12.64344 -12.22506 -12.17240 -11.97692 -11.94527 -11.77588 -11.73650 -11.50393 -11.43393 -11.34905 -11.01764 -10.79117 -9.91749 -9.67475 -9.42785 -8.90688 -8.28126 -6.44703 0.33931 0.43816 1.43391 1.47990 1.55788 1.78284 2.16554 2.39658 2.77335 2.90869 3.06907 3.44147 3.62779 3.73104 4.00897 4.04670 4.19718 4.26395 4.45220 4.48562 4.50979 4.55790 4.60634 4.64688 4.66920 4.76389 4.83621 4.88617 5.00426 5.02839 5.05266 5.07375 5.18536 5.24967 5.25208 5.26658 5.36971 5.42619 5.46374 5.48824 5.58486 5.62307 5.70787 5.83541 5.93749 6.10406 6.22942 6.48736 6.65967 7.19531 7.26234 7.63529 8.83996 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003662 C = 0.003097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.006932 B = 7645.197485 C = 9037.497845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.507 5.507 3 C 0.061 3.939 4 C -0.129 4.129 5 C -0.126 4.126 6 C -0.109 4.109 7 C -0.146 4.146 8 C 0.174 3.826 9 N -0.661 5.661 10 C 0.692 3.308 11 O -0.629 6.629 12 N -0.716 5.716 13 C 0.288 3.712 14 C -0.556 4.556 15 H 0.083 0.917 16 C 0.006 3.994 17 N -0.930 5.930 18 Si 0.985 3.015 19 H -0.262 1.262 20 H -0.285 1.285 21 H -0.262 1.262 22 C 0.092 3.908 23 C -0.117 4.117 24 C -0.122 4.122 25 C -0.119 4.119 26 C -0.114 4.114 27 H 0.065 0.935 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.144 0.856 31 H 0.152 0.848 32 H 0.138 0.862 33 H 0.110 0.890 34 H 0.419 0.581 35 H 0.405 0.595 36 H -0.012 1.012 37 H -0.014 1.014 38 H 0.269 0.731 39 H 0.056 0.944 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.080 0.920 45 H 0.054 0.946 46 H 0.084 0.916 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.209 -2.541 18.515 26.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.229 5.229 3 C -0.035 4.035 4 C -0.150 4.150 5 C -0.146 4.146 6 C -0.128 4.128 7 C -0.168 4.168 8 C 0.077 3.923 9 N -0.309 5.309 10 C 0.392 3.608 11 O -0.510 6.510 12 N -0.369 5.369 13 C 0.165 3.835 14 C -0.593 4.593 15 H 0.101 0.899 16 C -0.194 4.194 17 N -0.569 5.569 18 Si 0.808 3.192 19 H -0.186 1.186 20 H -0.210 1.210 21 H -0.187 1.187 22 C -0.015 4.015 23 C -0.156 4.156 24 C -0.160 4.160 25 C -0.157 4.157 26 C -0.151 4.151 27 H 0.084 0.916 28 H 0.111 0.889 29 H 0.058 0.942 30 H 0.162 0.838 31 H 0.169 0.831 32 H 0.156 0.844 33 H 0.128 0.872 34 H 0.257 0.743 35 H 0.240 0.760 36 H 0.006 0.994 37 H 0.004 0.996 38 H 0.078 0.922 39 H 0.074 0.926 40 H 0.062 0.938 41 H 0.067 0.933 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.099 0.901 45 H 0.073 0.927 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -18.130 -2.049 18.188 25.762 hybrid contribution 0.152 -0.258 -0.559 0.634 sum -17.978 -2.308 17.628 25.285 Atomic orbital electron populations 1.22589 0.84655 1.03569 1.01467 1.59675 1.09177 1.09599 1.44490 1.18488 1.01686 0.90780 0.92561 1.21596 1.00865 0.94442 0.98051 1.21273 0.98293 0.96100 0.98886 1.21277 0.98284 1.00119 0.93115 1.21314 1.01738 0.92826 1.00877 1.17629 0.98205 0.89132 0.87333 1.42278 1.17043 1.40434 1.31122 1.16260 0.82077 0.82237 0.80188 1.90839 1.50470 1.39180 1.70507 1.45318 1.22428 1.33729 1.35472 1.18427 0.79664 0.95822 0.89617 1.21549 1.04869 1.15330 1.17600 0.89894 1.26039 0.94529 0.98877 0.99932 1.70134 1.07925 1.38468 1.40344 0.85206 0.77674 0.78405 0.77918 1.18629 1.21027 1.18707 1.22369 0.93844 0.94580 0.90674 1.22343 0.95573 0.97499 1.00143 1.22460 0.98552 0.94101 1.00900 1.22302 0.94278 0.98233 1.00854 1.22291 0.97925 0.91725 1.03186 0.91579 0.88931 0.94157 0.83833 0.83062 0.84367 0.87197 0.74318 0.76007 0.99402 0.99631 0.92220 0.92622 0.93809 0.93336 0.90165 0.92716 0.90104 0.92692 0.89746 0.90017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.34 9.07 127.69 1.16 1.49 16 2 N -0.51 -10.30 4.02 -691.43 -2.78 -13.07 16 3 C 0.06 1.51 3.98 38.25 0.15 1.66 16 4 C -0.13 -2.64 8.57 22.38 0.19 -2.45 16 5 C -0.13 -2.57 10.04 22.27 0.22 -2.35 16 6 C -0.11 -2.83 10.04 22.28 0.22 -2.60 16 7 C -0.15 -4.95 8.70 22.37 0.19 -4.76 16 8 C 0.17 5.53 6.33 38.19 0.24 5.77 16 9 N -0.66 -22.28 5.18 -316.68 -1.64 -23.92 16 10 C 0.69 30.49 8.41 179.05 1.51 32.00 16 11 O -0.63 -33.17 13.76 -4.01 -0.06 -33.23 16 12 N -0.72 -32.12 5.55 -482.29 -2.68 -34.80 16 13 C 0.29 16.26 5.43 85.64 0.46 16.72 16 14 C -0.56 -30.71 9.28 25.60 0.24 -30.47 16 15 H 0.08 4.14 7.60 -2.91 -0.02 4.12 16 16 C 0.01 0.33 5.46 84.65 0.46 0.80 16 17 N -0.93 -56.70 13.29 21.45 0.28 -56.42 16 18 Si 0.99 42.68 29.54 68.60 2.03 44.71 16 19 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 20 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 22 C 0.09 1.72 2.45 45.64 0.11 1.84 16 23 C -0.12 -2.90 5.72 31.67 0.18 -2.72 16 24 C -0.12 -2.47 6.91 31.88 0.22 -2.25 16 25 C -0.12 -2.03 6.83 31.67 0.22 -1.81 16 26 C -0.11 -1.66 5.90 31.32 0.18 -1.47 16 27 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.09 1.04 5.97 -2.39 -0.01 1.03 16 29 H 0.04 0.50 7.36 -2.38 -0.02 0.48 16 30 H 0.14 2.16 7.03 -2.91 -0.02 2.14 16 31 H 0.15 2.07 8.06 -2.91 -0.02 2.04 16 32 H 0.14 3.00 8.06 -2.91 -0.02 2.97 16 33 H 0.11 4.49 6.19 -2.91 -0.02 4.48 16 34 H 0.42 11.74 8.52 -92.71 -0.79 10.95 16 35 H 0.40 15.19 8.34 -92.71 -0.77 14.42 16 36 H -0.01 -0.76 8.14 -2.39 -0.02 -0.78 16 37 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 38 H 0.27 15.32 8.31 -92.71 -0.77 14.55 16 39 H 0.06 0.94 7.11 -2.39 -0.02 0.92 16 40 H 0.04 1.40 8.03 -2.38 -0.02 1.39 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 42 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 45 H 0.05 1.09 8.14 -2.38 -0.02 1.08 16 46 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.08 1.15 6.10 -2.39 -0.01 1.13 16 Total: -1.00 -72.76 375.71 0.55 -72.21 By element: Atomic # 1 Polarization: 35.70 SS G_CDS: -0.58 Total: 35.13 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: 5.97 Total: 9.40 kcal Atomic # 7 Polarization: -121.40 SS G_CDS: -6.81 Total: -128.21 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.06 Total: -33.23 kcal Atomic # 14 Polarization: 42.68 SS G_CDS: 2.03 Total: 44.71 kcal Total: -72.76 0.55 -72.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000488958552.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.602 kcal (2) G-P(sol) polarization free energy of solvation -72.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds