Wall clock time and date at job start Tue Mar 31 2020 11:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00138 * 2 1 4 4 C 1.46895 * 111.00459 * 123.96080 * 2 1 3 5 5 C 1.52997 * 109.47597 * 170.00026 * 4 2 1 6 6 C 1.52994 * 109.47467 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47120 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00171 * 269.99616 * 7 6 5 9 9 C 1.50697 * 109.47031 * 270.00327 * 8 7 6 10 10 H 1.07998 * 120.00403 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99791 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46676 * 90.00195 * 13 11 9 15 15 H 1.48498 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48500 * 109.46943 * 330.00443 * 13 11 9 17 17 C 1.34780 * 120.00120 * 90.00090 * 7 6 5 18 18 O 1.21698 * 119.99532 * 359.97438 * 17 7 6 19 19 C 1.46419 * 119.99889 * 179.97438 * 17 7 6 20 20 C 1.34811 * 120.00073 * 173.21348 * 19 17 7 21 21 C 1.47221 * 119.99753 * 348.55033 * 20 19 17 22 22 C 1.40258 * 120.58404 * 132.45834 * 21 20 19 23 23 C 1.38283 * 118.27016 * 179.97438 * 22 21 20 24 24 C 1.38400 * 119.33112 * 0.02562 * 23 22 21 25 25 N 1.31943 * 121.13694 * 0.02562 * 24 23 22 26 26 C 1.31663 * 121.90266 * 359.67963 * 25 24 23 27 27 H 1.08999 * 109.46617 * 296.04170 * 1 2 3 28 28 H 1.09000 * 109.47415 * 56.04054 * 1 2 3 29 29 H 1.09002 * 109.47348 * 176.04724 * 1 2 3 30 30 H 1.08996 * 109.47037 * 183.95958 * 3 2 1 31 31 H 1.09004 * 109.46998 * 303.96031 * 3 2 1 32 32 H 1.09001 * 109.46896 * 63.95742 * 3 2 1 33 33 H 1.09001 * 109.47272 * 49.99177 * 4 2 1 34 34 H 1.09009 * 109.46832 * 289.99797 * 4 2 1 35 35 H 1.08998 * 109.47007 * 59.99231 * 5 4 2 36 36 H 1.09006 * 109.46335 * 299.99801 * 5 4 2 37 37 H 1.09001 * 109.47329 * 59.99196 * 6 5 4 38 38 H 1.09009 * 109.46905 * 299.99736 * 6 5 4 39 39 H 1.09008 * 109.46778 * 29.99864 * 8 7 6 40 40 H 1.09000 * 109.47583 * 149.99740 * 8 7 6 41 41 H 0.96997 * 119.99871 * 179.97438 * 12 11 9 42 42 H 1.07996 * 120.00144 * 353.21644 * 19 17 7 43 43 H 1.07998 * 120.00265 * 168.82412 * 20 19 17 44 44 H 1.08003 * 120.86639 * 359.95648 * 22 21 20 45 45 H 1.07997 * 120.33745 * 180.02562 * 23 22 21 46 46 H 1.07999 * 119.43103 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.73625 * 180.29079 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 3.5045 -0.9554 0.9702 6 6 4.0530 -1.7527 2.1551 7 7 5.4978 -1.9345 1.9946 8 6 6.0140 -3.1061 1.2827 9 6 6.2358 -4.2308 2.2608 10 1 6.0140 -4.0875 3.3080 11 6 6.7210 -5.4434 1.8187 12 7 6.9897 -5.6186 0.5433 13 14 6.9966 -6.8374 3.0313 14 1 5.7598 -7.6525 3.1378 15 1 8.1138 -7.6927 2.5566 16 1 7.3350 -6.2750 4.3634 17 6 6.3521 -1.0238 2.5020 18 8 5.9231 -0.0503 3.0931 19 6 7.7961 -1.2059 2.3420 20 6 8.6450 -0.2318 2.7267 21 6 8.1270 1.1030 3.0692 22 6 8.5409 1.7495 4.2431 23 6 8.0244 3.0026 4.5177 24 6 7.1242 3.5732 3.6348 25 7 6.7511 2.9421 2.5378 26 6 7.2176 1.7505 2.2278 27 1 -0.3632 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0827 1.3432 -0.0710 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5090 -1.7407 1.1755 34 1 1.7976 -0.2249 2.0627 35 1 3.9909 0.0193 0.9321 36 1 3.7023 -1.4966 0.0448 37 1 3.5665 -2.7274 2.1937 38 1 3.8551 -1.2111 3.0802 39 1 5.2933 -3.4187 0.5269 40 1 6.9582 -2.8519 0.8011 41 1 7.3313 -6.4715 0.2323 42 1 8.1811 -2.1204 1.9158 43 1 9.7054 -0.4294 2.7794 44 1 9.2444 1.2808 4.9153 45 1 8.3205 3.5306 5.4120 46 1 6.7202 4.5519 3.8474 47 1 6.8918 1.2676 1.3183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491303628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:41:00 Heat of formation + Delta-G solvation = 27.649718 kcal Electronic energy + Delta-G solvation = -26772.106810 eV Core-core repulsion = 23148.678823 eV Total energy + Delta-G solvation = -3623.427987 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.00946 -38.95165 -37.55144 -35.36548 -33.89256 -32.88016 -31.87572 -31.54354 -29.51543 -27.57714 -27.41297 -26.11393 -24.08255 -23.18712 -22.99455 -22.55829 -20.86920 -20.36681 -17.96698 -17.08546 -16.60525 -16.49786 -15.92631 -15.72798 -15.43765 -15.06136 -14.75804 -14.60950 -14.14035 -14.12305 -13.79455 -13.51396 -13.11491 -12.93045 -12.81460 -12.40765 -12.38014 -12.26656 -12.09584 -11.76054 -11.67481 -11.50285 -11.33043 -11.22457 -11.18949 -10.91250 -10.75083 -10.25962 -10.10341 -9.88511 -9.76499 -9.43828 -9.36273 -8.92505 -8.58553 -8.31241 -7.96767 -7.71855 -6.21594 -4.29396 1.01362 1.60701 2.09017 3.20302 3.27906 3.31192 3.82310 3.91194 4.16814 4.17288 4.31428 4.71466 5.02751 5.07142 5.09246 5.11940 5.17811 5.18944 5.27610 5.30972 5.41721 5.43082 5.60343 5.67362 5.72530 5.75975 5.80872 5.81527 5.88215 5.95899 6.04279 6.07166 6.18503 6.29178 6.36093 6.47008 6.61761 6.66149 6.68277 6.77595 7.00668 7.07432 7.09805 7.16190 7.52009 7.73389 8.01757 8.29398 8.30322 8.75980 8.98399 9.38842 10.84780 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007132 B = 0.005361 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3925.274820 B = 5221.951211 C = 8623.099694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.023 3.977 4 C 0.060 3.940 5 C -0.127 4.127 6 C 0.123 3.877 7 N -0.584 5.584 8 C 0.235 3.765 9 C -0.539 4.539 10 H 0.060 0.940 11 C 0.066 3.934 12 N -0.890 5.890 13 Si 0.896 3.104 14 H -0.279 1.279 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.536 3.464 18 O -0.565 6.565 19 C -0.161 4.161 20 C -0.072 4.072 21 C -0.089 4.089 22 C -0.071 4.071 23 C -0.184 4.184 24 C 0.089 3.911 25 N -0.491 5.491 26 C 0.169 3.831 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.023 0.977 33 H 0.075 0.925 34 H 0.032 0.968 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.038 0.962 40 H 0.040 0.960 41 H 0.266 0.734 42 H 0.149 0.851 43 H 0.134 0.866 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.146 0.854 47 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.333 12.682 2.036 13.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.125 4.125 4 C -0.069 4.069 5 C -0.166 4.166 6 C -0.001 4.001 7 N -0.312 5.312 8 C 0.116 3.884 9 C -0.577 4.577 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.528 5.528 13 Si 0.723 3.277 14 H -0.205 1.205 15 H -0.210 1.210 16 H -0.198 1.198 17 C 0.326 3.674 18 O -0.447 6.447 19 C -0.182 4.182 20 C -0.092 4.092 21 C -0.091 4.091 22 C -0.097 4.097 23 C -0.204 4.204 24 C -0.066 4.066 25 N -0.200 5.200 26 C 0.011 3.989 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.051 0.949 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.056 0.944 40 H 0.058 0.942 41 H 0.075 0.925 42 H 0.167 0.833 43 H 0.152 0.848 44 H 0.146 0.854 45 H 0.145 0.855 46 H 0.163 0.837 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.967 13.178 1.198 13.561 hybrid contribution 0.454 -1.234 1.987 2.383 sum -2.513 11.944 3.185 12.614 Atomic orbital electron populations 1.22366 0.87728 1.02116 1.00116 1.61971 1.07433 1.14044 1.43673 1.22418 1.01546 0.88573 0.99976 1.22065 0.96024 0.97934 0.90840 1.21926 0.93729 1.01130 0.99851 1.21193 0.81269 1.00089 0.97591 1.48159 1.05275 1.23915 1.53854 1.19495 0.95474 0.81270 0.92188 1.21500 1.44528 0.96859 0.94838 0.92146 1.24934 0.95038 0.98490 0.95265 1.69921 1.44048 1.25212 1.13647 0.86525 0.77988 0.81867 0.81288 1.20512 1.21028 1.19803 1.18390 0.87287 0.82448 0.79240 1.90767 1.79366 1.30387 1.44204 1.23514 0.93337 1.00998 1.00308 1.22133 0.99170 0.91020 0.96903 1.19916 0.98105 0.94970 0.96086 1.21558 0.98304 0.94213 0.95593 1.21862 1.00584 0.96784 1.01186 1.22615 0.94520 0.99245 0.90253 1.67543 1.23939 1.09765 1.18769 1.22658 0.89123 0.89317 0.97843 0.95953 0.91624 0.91393 0.90778 0.91798 0.95803 0.90700 0.94927 0.91788 0.90887 0.90462 0.91235 0.94358 0.94241 0.92468 0.83313 0.84815 0.85371 0.85531 0.83698 0.83960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.57 60.06 0.57 0.85 16 2 N -0.55 -7.36 5.02 -251.26 -1.26 -8.62 16 3 C 0.02 0.29 9.32 60.06 0.56 0.85 16 4 C 0.06 0.84 4.96 -3.83 -0.02 0.82 16 5 C -0.13 -2.06 5.46 -26.74 -0.15 -2.21 16 6 C 0.12 2.23 5.41 -4.04 -0.02 2.21 16 7 N -0.58 -11.91 2.46 -176.70 -0.43 -12.34 16 8 C 0.24 5.39 4.83 -5.20 -0.03 5.37 16 9 C -0.54 -13.63 9.39 -34.44 -0.32 -13.96 16 10 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 11 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 12 N -0.89 -23.92 13.29 55.43 0.74 -23.19 16 13 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 C 0.54 10.78 6.82 -12.97 -0.09 10.69 16 18 O -0.56 -12.01 12.06 5.19 0.06 -11.94 16 19 C -0.16 -2.88 9.05 -37.51 -0.34 -3.22 16 20 C -0.07 -1.09 9.81 -37.15 -0.36 -1.45 16 21 C -0.09 -1.41 4.35 -104.91 -0.46 -1.86 16 22 C -0.07 -0.99 9.95 -38.81 -0.39 -1.37 16 23 C -0.18 -2.35 10.10 -39.51 -0.40 -2.75 16 24 C 0.09 1.25 11.17 -17.44 -0.19 1.05 16 25 N -0.49 -8.26 10.34 -12.83 -0.13 -8.39 16 26 C 0.17 2.89 7.97 -17.04 -0.14 2.75 16 27 H 0.02 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.63 8.12 -51.93 -0.42 0.21 16 29 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 30 H 0.07 1.01 6.47 -51.93 -0.34 0.67 16 31 H 0.06 0.70 8.12 -51.93 -0.42 0.28 16 32 H 0.02 0.30 8.14 -51.93 -0.42 -0.13 16 33 H 0.07 1.00 8.06 -51.93 -0.42 0.59 16 34 H 0.03 0.46 8.12 -51.92 -0.42 0.04 16 35 H 0.06 1.11 6.55 -51.93 -0.34 0.77 16 36 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.08 1.40 8.07 -51.93 -0.42 0.98 16 38 H 0.07 1.30 7.42 -51.92 -0.39 0.91 16 39 H 0.04 0.93 8.07 -51.92 -0.42 0.51 16 40 H 0.04 0.92 6.19 -51.93 -0.32 0.60 16 41 H 0.27 6.81 8.31 -40.82 -0.34 6.48 16 42 H 0.15 2.76 6.34 -52.49 -0.33 2.43 16 43 H 0.13 1.60 8.06 -52.49 -0.42 1.18 16 44 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.15 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.14 2.47 7.45 -52.49 -0.39 2.08 16 LS Contribution 387.53 15.07 5.84 5.84 Total: -1.00 -29.43 387.53 -9.63 -39.05 By element: Atomic # 1 Polarization: 12.61 SS G_CDS: -7.56 Total: 5.06 kcal Atomic # 6 Polarization: 1.23 SS G_CDS: -1.86 Total: -0.63 kcal Atomic # 7 Polarization: -51.45 SS G_CDS: -1.09 Total: -52.54 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: 0.06 Total: -11.94 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.43 -9.63 -39.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491303628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.703 kcal (2) G-P(sol) polarization free energy of solvation -29.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.053 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds