Wall clock time and date at job start Tue Mar 31 2020 11:40:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 111.00138 * 2 1 4 4 C 1.46895 * 111.00459 * 123.96080 * 2 1 3 5 5 C 1.52997 * 109.47597 * 170.00026 * 4 2 1 6 6 C 1.52994 * 109.47467 * 179.97438 * 5 4 2 7 7 N 1.46499 * 109.47120 * 179.97438 * 6 5 4 8 8 C 1.46497 * 120.00171 * 269.99616 * 7 6 5 9 9 C 1.50697 * 109.47031 * 270.00327 * 8 7 6 10 10 H 1.07998 * 120.00403 * 0.02562 * 9 8 7 11 11 C 1.37882 * 120.00042 * 179.97438 * 9 8 7 12 12 N 1.31517 * 119.99791 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00259 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46676 * 90.00195 * 13 11 9 15 15 H 1.48498 * 109.47031 * 209.99977 * 13 11 9 16 16 H 1.48500 * 109.46943 * 330.00443 * 13 11 9 17 17 C 1.34780 * 120.00120 * 90.00090 * 7 6 5 18 18 O 1.21698 * 119.99532 * 359.97438 * 17 7 6 19 19 C 1.46419 * 119.99889 * 179.97438 * 17 7 6 20 20 C 1.34811 * 120.00073 * 173.21348 * 19 17 7 21 21 C 1.47221 * 119.99753 * 348.55033 * 20 19 17 22 22 C 1.40258 * 120.58404 * 132.45834 * 21 20 19 23 23 C 1.38283 * 118.27016 * 179.97438 * 22 21 20 24 24 C 1.38400 * 119.33112 * 0.02562 * 23 22 21 25 25 N 1.31943 * 121.13694 * 0.02562 * 24 23 22 26 26 C 1.31663 * 121.90266 * 359.67963 * 25 24 23 27 27 H 1.08999 * 109.46617 * 296.04170 * 1 2 3 28 28 H 1.09000 * 109.47415 * 56.04054 * 1 2 3 29 29 H 1.09002 * 109.47348 * 176.04724 * 1 2 3 30 30 H 1.08996 * 109.47037 * 183.95958 * 3 2 1 31 31 H 1.09004 * 109.46998 * 303.96031 * 3 2 1 32 32 H 1.09001 * 109.46896 * 63.95742 * 3 2 1 33 33 H 1.09001 * 109.47272 * 49.99177 * 4 2 1 34 34 H 1.09009 * 109.46832 * 289.99797 * 4 2 1 35 35 H 1.08998 * 109.47007 * 59.99231 * 5 4 2 36 36 H 1.09006 * 109.46335 * 299.99801 * 5 4 2 37 37 H 1.09001 * 109.47329 * 59.99196 * 6 5 4 38 38 H 1.09009 * 109.46905 * 299.99736 * 6 5 4 39 39 H 1.09008 * 109.46778 * 29.99864 * 8 7 6 40 40 H 1.09000 * 109.47583 * 149.99740 * 8 7 6 41 41 H 0.96997 * 119.99871 * 179.97438 * 12 11 9 42 42 H 1.07996 * 120.00144 * 353.21644 * 19 17 7 43 43 H 1.07998 * 120.00265 * 168.82412 * 20 19 17 44 44 H 1.08003 * 120.86639 * 359.95648 * 22 21 20 45 45 H 1.07997 * 120.33745 * 180.02562 * 23 22 21 46 46 H 1.07999 * 119.43103 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.73625 * 180.29079 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1374 5 6 3.5045 -0.9554 0.9702 6 6 4.0530 -1.7527 2.1551 7 7 5.4978 -1.9345 1.9946 8 6 6.0140 -3.1061 1.2827 9 6 6.2358 -4.2308 2.2608 10 1 6.0140 -4.0875 3.3080 11 6 6.7210 -5.4434 1.8187 12 7 6.9897 -5.6186 0.5433 13 14 6.9966 -6.8374 3.0313 14 1 5.7598 -7.6525 3.1378 15 1 8.1138 -7.6927 2.5566 16 1 7.3350 -6.2750 4.3634 17 6 6.3521 -1.0238 2.5020 18 8 5.9231 -0.0503 3.0931 19 6 7.7961 -1.2059 2.3420 20 6 8.6450 -0.2318 2.7267 21 6 8.1270 1.1030 3.0692 22 6 8.5409 1.7495 4.2431 23 6 8.0244 3.0026 4.5177 24 6 7.1242 3.5732 3.6348 25 7 6.7511 2.9421 2.5378 26 6 7.2176 1.7505 2.2278 27 1 -0.3632 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3634 -1.0252 -0.0708 30 1 3.0827 1.3432 -0.0710 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5090 -1.7407 1.1755 34 1 1.7976 -0.2249 2.0627 35 1 3.9909 0.0193 0.9321 36 1 3.7023 -1.4966 0.0448 37 1 3.5665 -2.7274 2.1937 38 1 3.8551 -1.2111 3.0802 39 1 5.2933 -3.4187 0.5269 40 1 6.9582 -2.8519 0.8011 41 1 7.3313 -6.4715 0.2323 42 1 8.1811 -2.1204 1.9158 43 1 9.7054 -0.4294 2.7794 44 1 9.2444 1.2808 4.9153 45 1 8.3205 3.5306 5.4120 46 1 6.7202 4.5519 3.8474 47 1 6.8918 1.2676 1.3183 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491303628.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:40:59 Heat of formation + Delta-G solvation = 10.577863 kcal Electronic energy + Delta-G solvation = -26772.847102 eV Core-core repulsion = 23148.678823 eV Total energy + Delta-G solvation = -3624.168278 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.32260 -40.33970 -38.67708 -36.93199 -35.28811 -34.64821 -33.16001 -32.85848 -30.74071 -29.23289 -28.52197 -27.46555 -25.37735 -24.84218 -24.28693 -23.77715 -22.07637 -21.69359 -19.47382 -18.62192 -18.31467 -17.84149 -17.30911 -16.98374 -16.59648 -16.40655 -16.22287 -15.95582 -15.43787 -15.38488 -15.12599 -14.76519 -14.44393 -14.26607 -14.14534 -13.92125 -13.73325 -13.47986 -13.30296 -13.26125 -12.94041 -12.88775 -12.67820 -12.61654 -12.48043 -12.41841 -12.36378 -11.96800 -11.69355 -11.54162 -11.15705 -10.87091 -10.57550 -10.50687 -10.17939 -9.40317 -9.35220 -9.23003 -8.19063 -6.34167 -0.22625 0.49274 0.84108 1.41890 1.44305 1.53638 2.28420 2.43909 2.48428 3.01398 3.03265 3.11021 3.59115 3.78110 3.84900 3.97865 4.07422 4.08333 4.12878 4.20543 4.30613 4.39226 4.42324 4.47733 4.58613 4.63146 4.64785 4.70214 4.73326 4.76940 4.90483 4.94229 4.97130 4.98900 5.08184 5.12021 5.20467 5.21727 5.28155 5.40520 5.45602 5.67636 5.85640 5.91449 6.01372 6.06746 6.09424 6.58430 6.82929 7.14477 7.32826 7.43918 8.86157 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007132 B = 0.005361 C = 0.003246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3925.274820 B = 5221.951211 C = 8623.099694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.563 5.563 3 C 0.026 3.974 4 C 0.067 3.933 5 C -0.110 4.110 6 C 0.125 3.875 7 N -0.592 5.592 8 C 0.254 3.746 9 C -0.545 4.545 10 H 0.050 0.950 11 C 0.024 3.976 12 N -0.919 5.919 13 Si 0.956 3.044 14 H -0.276 1.276 15 H -0.279 1.279 16 H -0.272 1.272 17 C 0.535 3.465 18 O -0.580 6.580 19 C -0.201 4.201 20 C -0.030 4.030 21 C -0.114 4.114 22 C -0.071 4.071 23 C -0.176 4.176 24 C 0.080 3.920 25 N -0.520 5.520 26 C 0.150 3.850 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.055 0.945 31 H 0.082 0.918 32 H 0.024 0.976 33 H 0.083 0.917 34 H 0.033 0.967 35 H 0.049 0.951 36 H 0.059 0.941 37 H 0.075 0.925 38 H 0.064 0.936 39 H 0.019 0.981 40 H 0.032 0.968 41 H 0.268 0.732 42 H 0.138 0.862 43 H 0.172 0.828 44 H 0.158 0.842 45 H 0.167 0.833 46 H 0.175 0.825 47 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.843 13.674 3.780 14.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.287 5.287 3 C -0.122 4.122 4 C -0.061 4.061 5 C -0.149 4.149 6 C 0.001 3.999 7 N -0.321 5.321 8 C 0.133 3.867 9 C -0.584 4.584 10 H 0.068 0.932 11 C -0.176 4.176 12 N -0.558 5.558 13 Si 0.781 3.219 14 H -0.202 1.202 15 H -0.204 1.204 16 H -0.196 1.196 17 C 0.326 3.674 18 O -0.463 6.463 19 C -0.221 4.221 20 C -0.051 4.051 21 C -0.116 4.116 22 C -0.096 4.096 23 C -0.195 4.195 24 C -0.075 4.075 25 N -0.229 5.229 26 C -0.008 4.008 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.092 0.908 30 H 0.074 0.926 31 H 0.101 0.899 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.093 0.907 38 H 0.082 0.918 39 H 0.037 0.963 40 H 0.050 0.950 41 H 0.077 0.923 42 H 0.155 0.845 43 H 0.189 0.811 44 H 0.176 0.824 45 H 0.185 0.815 46 H 0.193 0.807 47 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -2.489 14.180 2.939 14.694 hybrid contribution 0.325 -1.350 1.493 2.039 sum -2.164 12.830 4.432 13.745 Atomic orbital electron populations 1.22433 0.85824 1.02936 1.01084 1.61961 1.09229 1.14317 1.43169 1.22390 1.00505 0.88510 1.00813 1.21949 0.94230 0.98652 0.91311 1.21717 0.95417 0.99584 0.98213 1.21233 0.80440 1.00123 0.98116 1.48148 1.06229 1.23537 1.54162 1.19095 0.94530 0.81632 0.91446 1.21644 1.44406 0.97746 0.94572 0.93213 1.25616 0.94759 1.00563 0.96697 1.70011 1.44777 1.25878 1.15093 0.85588 0.77959 0.79101 0.79218 1.20199 1.20421 1.19640 1.18737 0.88194 0.81860 0.78583 1.90745 1.79895 1.30730 1.44967 1.23285 0.92386 1.02030 1.04442 1.22542 1.00482 0.89744 0.92286 1.20052 0.98874 0.95362 0.97328 1.21982 0.98200 0.94545 0.94870 1.22308 0.99057 0.96303 1.01843 1.23241 0.94514 1.00262 0.89478 1.67502 1.24881 1.10021 1.20532 1.22474 0.90188 0.90084 0.98060 0.95359 0.90129 0.90794 0.92613 0.89919 0.95778 0.89867 0.94893 0.93234 0.92267 0.90669 0.91765 0.96285 0.94995 0.92274 0.84469 0.81092 0.82433 0.81526 0.80747 0.85986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.51 9.57 127.69 1.22 1.73 16 2 N -0.56 -14.92 5.02 -948.85 -4.76 -19.69 16 3 C 0.03 0.65 9.32 127.69 1.19 1.84 16 4 C 0.07 1.91 4.96 86.30 0.43 2.34 16 5 C -0.11 -3.76 5.46 30.59 0.17 -3.59 16 6 C 0.12 4.75 5.41 86.38 0.47 5.21 16 7 N -0.59 -25.37 2.46 -831.18 -2.04 -27.42 16 8 C 0.25 12.18 4.83 85.63 0.41 12.59 16 9 C -0.55 -28.26 9.39 25.60 0.24 -28.01 16 10 H 0.05 2.64 7.81 -2.91 -0.02 2.62 16 11 C 0.02 1.26 5.46 84.66 0.46 1.72 16 12 N -0.92 -50.09 13.29 21.45 0.28 -49.80 16 13 Si 0.96 41.40 29.54 68.60 2.03 43.43 16 14 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 15 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 16 17 C 0.53 22.34 6.82 86.37 0.59 22.93 16 18 O -0.58 -25.35 12.06 -4.34 -0.05 -25.40 16 19 C -0.20 -7.36 9.05 23.61 0.21 -7.15 16 20 C -0.03 -0.90 9.81 23.85 0.23 -0.66 16 21 C -0.11 -3.50 4.35 -20.05 -0.09 -3.59 16 22 C -0.07 -1.75 9.95 22.77 0.23 -1.52 16 23 C -0.18 -3.87 10.10 22.32 0.23 -3.64 16 24 C 0.08 2.08 11.17 84.71 0.95 3.03 16 25 N -0.52 -17.39 10.34 -194.51 -2.01 -19.40 16 26 C 0.15 5.21 7.97 85.09 0.68 5.88 16 27 H 0.03 0.54 8.14 -2.39 -0.02 0.52 16 28 H 0.08 1.39 8.12 -2.39 -0.02 1.37 16 29 H 0.07 1.41 8.12 -2.39 -0.02 1.39 16 30 H 0.06 1.59 6.47 -2.39 -0.02 1.57 16 31 H 0.08 1.73 8.12 -2.38 -0.02 1.71 16 32 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.08 2.22 8.06 -2.39 -0.02 2.20 16 34 H 0.03 0.93 8.12 -2.38 -0.02 0.92 16 35 H 0.05 1.82 6.55 -2.39 -0.02 1.81 16 36 H 0.06 2.16 8.14 -2.38 -0.02 2.14 16 37 H 0.07 2.85 8.07 -2.39 -0.02 2.83 16 38 H 0.06 2.50 7.42 -2.38 -0.02 2.48 16 39 H 0.02 0.98 8.07 -2.38 -0.02 0.96 16 40 H 0.03 1.58 6.19 -2.39 -0.01 1.56 16 41 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 42 H 0.14 5.31 6.34 -2.91 -0.02 5.29 16 43 H 0.17 3.63 8.06 -2.91 -0.02 3.60 16 44 H 0.16 2.91 8.06 -2.91 -0.02 2.88 16 45 H 0.17 2.31 8.06 -2.91 -0.02 2.29 16 46 H 0.18 3.29 8.06 -2.91 -0.02 3.26 16 47 H 0.12 4.56 7.45 -2.91 -0.02 4.54 16 Total: -1.00 -64.61 387.53 2.00 -62.61 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.94 Total: 26.57 kcal Atomic # 6 Polarization: 1.48 SS G_CDS: 7.62 Total: 9.10 kcal Atomic # 7 Polarization: -107.77 SS G_CDS: -8.53 Total: -116.30 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.05 Total: -25.40 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.43 kcal Total: -64.61 2.00 -62.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491303628.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.191 kcal (2) G-P(sol) polarization free energy of solvation -64.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds