Wall clock time and date at job start Tue Mar 31 2020 11:45:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 H 1.07999 * 119.99476 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99914 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47230 * 60.00308 * 8 6 4 10 10 H 1.48505 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46974 * 299.99927 * 8 6 4 12 12 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00463 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99675 * 359.72090 * 12 2 1 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 2 16 16 N 1.46893 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.48570 * 111.00144 * 285.41886 * 16 15 14 18 18 C 1.54372 * 104.59524 * 200.96123 * 17 16 15 19 19 C 1.54257 * 105.06268 * 23.84956 * 18 17 16 20 20 C 1.48562 * 111.00100 * 170.00136 * 16 15 14 21 21 H 1.08996 * 110.41137 * 40.26035 * 20 16 15 22 22 C 1.50703 * 110.41081 * 277.93487 * 20 16 15 23 23 C 1.38216 * 119.61810 * 154.99802 * 22 20 16 24 24 C 1.38630 * 119.16181 * 179.97438 * 23 22 20 25 25 C 1.38672 * 118.41899 * 0.02562 * 24 23 22 26 26 C 1.38179 * 119.16559 * 359.97438 * 25 24 23 27 27 N 1.31859 * 119.61674 * 334.72878 * 22 20 16 28 28 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 29 29 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 30 30 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 32 32 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 33 33 H 0.97000 * 120.00447 * 179.97438 * 7 6 4 34 34 H 1.09009 * 109.47352 * 300.27556 * 14 12 2 35 35 H 1.08998 * 109.47585 * 60.27844 * 14 12 2 36 36 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 37 37 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 38 38 H 1.08998 * 110.40741 * 319.74071 * 17 16 15 39 39 H 1.09002 * 110.41110 * 82.17738 * 17 16 15 40 40 H 1.09008 * 110.32623 * 264.95758 * 18 17 16 41 41 H 1.08998 * 110.32466 * 142.75001 * 18 17 16 42 42 H 1.09003 * 110.32663 * 241.10428 * 19 18 17 43 43 H 1.09010 * 110.41130 * 118.94089 * 19 18 17 44 44 H 1.08001 * 120.42165 * 359.95886 * 23 22 20 45 45 H 1.08003 * 120.79155 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.41767 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.61747 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4378 3.4169 -3.4340 9 1 2.1405 3.5937 -4.1347 10 1 4.1792 4.7037 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0053 15 6 2.3797 -3.6352 0.0104 16 7 1.6453 -4.9073 0.0166 17 6 1.0601 -5.1778 1.3552 18 6 0.8170 -6.7022 1.3727 19 6 1.8048 -7.2776 0.3370 20 6 2.5619 -6.0525 -0.2191 21 1 3.4980 -5.9073 0.3199 22 6 2.8259 -6.2195 -1.6934 23 6 3.9906 -6.8339 -2.1135 24 6 4.2236 -6.9830 -3.4719 25 6 3.2724 -6.5059 -4.3610 26 6 2.1317 -5.9025 -3.8670 27 7 1.9407 -5.7825 -2.5675 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5137 33 1 4.0301 4.4440 -0.8504 34 1 0.7588 -2.5261 0.8956 35 1 0.7587 -2.5340 -0.8844 36 1 3.0064 -3.5813 -0.8798 37 1 3.0064 -3.5735 0.9001 38 1 1.7613 -4.8957 2.1406 39 1 0.1188 -4.6412 1.4741 40 1 -0.2095 -6.9252 1.0813 41 1 1.0270 -7.1077 2.3623 42 1 1.2633 -7.7830 -0.4626 43 1 2.5001 -7.9665 0.8168 44 1 4.7101 -7.1930 -1.3926 45 1 5.1246 -7.4595 -3.8292 46 1 3.4212 -6.6047 -5.4261 47 1 1.3863 -5.5279 -4.5529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537851968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:26 Heat of formation + Delta-G solvation = 8.358070 kcal Electronic energy + Delta-G solvation = -26548.760924 eV Core-core repulsion = 22924.496388 eV Total energy + Delta-G solvation = -3624.264536 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.52926 -39.12261 -38.36817 -34.77113 -33.36101 -32.56318 -32.51215 -32.04420 -29.50721 -28.26849 -27.50702 -25.68575 -24.11881 -23.61654 -23.15466 -22.02757 -20.70784 -20.43591 -18.22912 -17.17731 -16.68663 -16.48438 -16.06419 -16.00065 -15.31412 -15.21838 -15.10181 -14.68243 -14.29168 -14.03542 -13.91045 -13.67228 -13.30948 -13.02458 -12.71948 -12.59571 -12.20466 -12.12301 -11.98439 -11.78051 -11.65748 -11.57789 -11.38931 -11.28307 -11.06887 -10.86651 -10.75460 -10.57121 -10.49862 -10.11594 -9.93060 -9.59249 -9.34918 -9.05616 -8.80561 -8.43855 -8.39359 -7.56749 -6.00212 -4.04733 1.00352 1.22916 3.34679 3.38448 3.41396 3.54602 3.64931 3.76836 4.09572 4.22038 4.48070 4.53791 4.63236 4.73284 4.78535 4.84895 4.96541 5.05234 5.16075 5.26412 5.30738 5.34332 5.36788 5.46806 5.51902 5.55231 5.61226 5.64626 5.72941 5.75691 5.86283 5.91369 5.98136 5.99088 6.01466 6.06202 6.22097 6.24085 6.31616 6.59149 6.84762 7.05902 7.12351 7.49363 7.61278 7.96678 8.04941 8.28661 8.50265 8.95235 9.18065 9.60243 11.07859 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.003355 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.388642 B = 8342.531329 C = 9818.612617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.525 4.525 5 H 0.056 0.944 6 C 0.061 3.939 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 C 0.504 3.496 13 O -0.548 6.548 14 C -0.128 4.128 15 C 0.067 3.933 16 N -0.486 5.486 17 C 0.028 3.972 18 C -0.121 4.121 19 C -0.110 4.110 20 C 0.110 3.890 21 H 0.068 0.932 22 C 0.144 3.856 23 C -0.172 4.172 24 C -0.077 4.077 25 C -0.180 4.180 26 C 0.099 3.901 27 N -0.445 5.445 28 H 0.043 0.957 29 H 0.072 0.928 30 H 0.059 0.941 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.263 0.737 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.077 0.923 37 H 0.042 0.958 38 H 0.045 0.955 39 H 0.084 0.916 40 H 0.073 0.927 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.131 0.869 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 -24.446 0.429 25.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.336 5.336 3 C 0.126 3.874 4 C -0.564 4.564 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.291 3.709 13 O -0.426 6.426 14 C -0.169 4.169 15 C -0.061 4.061 16 N -0.209 5.209 17 C -0.100 4.100 18 C -0.159 4.159 19 C -0.148 4.148 20 C 0.001 3.999 21 H 0.086 0.914 22 C 0.005 3.995 23 C -0.193 4.193 24 C -0.103 4.103 25 C -0.200 4.200 26 C -0.059 4.059 27 N -0.153 5.153 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.100 0.900 35 H 0.114 0.886 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.091 0.909 41 H 0.086 0.914 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.149 0.851 47 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -5.822 -23.776 0.367 24.481 hybrid contribution 1.607 0.114 -0.851 1.822 sum -4.215 -23.661 -0.484 24.039 Atomic orbital electron populations 1.21629 0.81437 1.02647 1.00292 1.48150 1.06189 1.07852 1.71402 1.19260 0.92514 0.78232 0.97400 1.21422 1.36441 1.06178 0.92372 0.92539 1.24934 0.95390 0.96394 0.97406 1.69926 1.38475 1.14382 1.30766 0.86563 0.78373 0.77769 0.84749 1.20220 1.21172 1.20213 1.20361 0.88063 0.85247 0.77259 1.90653 1.14084 1.87427 1.50450 1.21524 0.99104 0.92274 1.03957 1.21912 0.94653 0.87589 1.01967 1.65238 1.28685 1.00610 1.26410 1.23189 1.00454 0.95981 0.90353 1.22266 1.00036 0.94966 0.98594 1.22262 0.97918 0.96007 0.98648 1.21468 0.95869 0.92602 0.90011 0.91376 1.20959 0.89895 0.93468 0.95200 1.21898 0.98664 1.02000 0.96719 1.21505 0.98729 0.96994 0.93059 1.22164 0.95989 1.00873 1.00982 1.22882 0.96054 0.94830 0.92113 1.67583 1.30544 1.15067 1.02122 0.93886 0.90916 0.92226 0.95095 0.93957 0.92711 0.89985 0.88608 0.90435 0.93974 0.93699 0.89747 0.90861 0.91352 0.90900 0.91145 0.85117 0.85042 0.85056 0.82842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 10.24 59.84 0.61 2.02 16 2 N -0.60 -13.43 2.86 -182.96 -0.52 -13.95 16 3 C 0.25 6.66 5.16 -5.19 -0.03 6.64 16 4 C -0.53 -15.42 9.39 -34.44 -0.32 -15.74 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 7 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 8 Si 0.90 22.40 29.54 -169.99 -5.02 17.38 16 9 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 12 C 0.50 11.01 7.67 -10.98 -0.08 10.93 16 13 O -0.55 -14.36 15.56 5.55 0.09 -14.27 16 14 C -0.13 -2.07 4.37 -27.88 -0.12 -2.19 16 15 C 0.07 1.05 4.06 -3.83 -0.02 1.04 16 16 N -0.49 -6.29 4.61 -223.50 -1.03 -7.32 16 17 C 0.03 0.29 5.91 -2.18 -0.01 0.28 16 18 C -0.12 -1.02 7.00 -25.35 -0.18 -1.19 16 19 C -0.11 -0.99 6.54 -25.35 -0.17 -1.15 16 20 C 0.11 1.26 2.51 -67.22 -0.17 1.09 16 21 H 0.07 0.75 7.97 -51.93 -0.41 0.34 16 22 C 0.14 1.78 5.40 -82.59 -0.45 1.34 16 23 C -0.17 -1.80 9.77 -39.44 -0.39 -2.18 16 24 C -0.08 -0.72 10.18 -39.28 -0.40 -1.12 16 25 C -0.18 -1.74 10.11 -39.44 -0.40 -2.14 16 26 C 0.10 1.14 11.18 -17.55 -0.20 0.94 16 27 N -0.45 -6.11 9.79 -9.48 -0.09 -6.20 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.19 16 29 H 0.07 1.25 8.07 -51.93 -0.42 0.83 16 30 H 0.06 0.84 6.45 -51.93 -0.33 0.50 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 34 H 0.08 1.13 7.43 -51.92 -0.39 0.74 16 35 H 0.10 1.52 7.41 -51.93 -0.38 1.13 16 36 H 0.08 1.42 7.74 -51.93 -0.40 1.02 16 37 H 0.04 0.68 7.72 -51.93 -0.40 0.28 16 38 H 0.04 0.47 7.75 -51.93 -0.40 0.07 16 39 H 0.08 0.84 7.85 -51.93 -0.41 0.44 16 40 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.71 7.86 -51.93 -0.41 0.30 16 43 H 0.07 0.50 8.14 -51.92 -0.42 0.08 16 44 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 45 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 47 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 384.57 15.07 5.80 5.80 Total: -1.00 -35.55 384.57 -10.15 -45.69 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: -7.69 Total: -0.83 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.41 Total: 0.22 kcal Atomic # 7 Polarization: -53.07 SS G_CDS: -0.91 Total: -53.98 kcal Atomic # 8 Polarization: -14.36 SS G_CDS: 0.09 Total: -14.27 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -35.55 -10.15 -45.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537851968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.050 kcal (2) G-P(sol) polarization free energy of solvation -35.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds