Wall clock time and date at job start Tue Mar 31 2020 11:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46497 * 120.00129 * 2 1 4 4 C 1.50709 * 109.47273 * 270.00327 * 3 2 1 5 5 H 1.07999 * 119.99476 * 359.97438 * 4 3 2 6 6 C 1.37873 * 120.00210 * 179.97438 * 4 3 2 7 7 N 1.31517 * 119.99914 * 0.02562 * 6 4 3 8 8 Si 1.86797 * 120.00074 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47230 * 60.00308 * 8 6 4 10 10 H 1.48505 * 109.47033 * 179.97438 * 8 6 4 11 11 H 1.48494 * 109.46974 * 299.99927 * 8 6 4 12 12 C 1.34777 * 120.00345 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00463 * 179.97438 * 12 2 1 14 14 C 1.50700 * 119.99675 * 359.72090 * 12 2 1 15 15 C 1.53004 * 109.47208 * 180.27843 * 14 12 2 16 16 N 1.46893 * 109.47282 * 179.97438 * 15 14 12 17 17 C 1.48570 * 111.00144 * 285.41886 * 16 15 14 18 18 C 1.54372 * 104.59524 * 200.96123 * 17 16 15 19 19 C 1.54257 * 105.06268 * 23.84956 * 18 17 16 20 20 C 1.48562 * 111.00100 * 170.00136 * 16 15 14 21 21 H 1.08996 * 110.41137 * 40.26035 * 20 16 15 22 22 C 1.50703 * 110.41081 * 277.93487 * 20 16 15 23 23 C 1.38216 * 119.61810 * 154.99802 * 22 20 16 24 24 C 1.38630 * 119.16181 * 179.97438 * 23 22 20 25 25 C 1.38672 * 118.41899 * 0.02562 * 24 23 22 26 26 C 1.38179 * 119.16559 * 359.97438 * 25 24 23 27 27 N 1.31859 * 119.61674 * 334.72878 * 22 20 16 28 28 H 1.08997 * 109.47115 * 269.99822 * 1 2 3 29 29 H 1.08995 * 109.47364 * 30.00213 * 1 2 3 30 30 H 1.09002 * 109.47090 * 149.99764 * 1 2 3 31 31 H 1.09000 * 109.46889 * 29.99981 * 3 2 1 32 32 H 1.09001 * 109.47460 * 150.00590 * 3 2 1 33 33 H 0.97000 * 120.00447 * 179.97438 * 7 6 4 34 34 H 1.09009 * 109.47352 * 300.27556 * 14 12 2 35 35 H 1.08998 * 109.47585 * 60.27844 * 14 12 2 36 36 H 1.09000 * 109.46887 * 300.00372 * 15 14 12 37 37 H 1.08998 * 109.46846 * 59.99549 * 15 14 12 38 38 H 1.08998 * 110.40741 * 319.74071 * 17 16 15 39 39 H 1.09002 * 110.41110 * 82.17738 * 17 16 15 40 40 H 1.09008 * 110.32623 * 264.95758 * 18 17 16 41 41 H 1.08998 * 110.32466 * 142.75001 * 18 17 16 42 42 H 1.09003 * 110.32663 * 241.10428 * 19 18 17 43 43 H 1.09010 * 110.41130 * 118.94089 * 19 18 17 44 44 H 1.08001 * 120.42165 * 359.95886 * 23 22 20 45 45 H 1.08003 * 120.79155 * 180.02562 * 24 23 22 46 46 H 1.08005 * 120.41767 * 179.97438 * 25 24 23 47 47 H 1.07999 * 119.61747 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7038 -1.4209 5 1 2.0980 1.0958 -2.2417 6 6 3.1259 2.8780 -1.6728 7 7 3.5533 3.6181 -0.6732 8 14 3.4378 3.4169 -3.4340 9 1 2.1405 3.5937 -4.1347 10 1 4.1792 4.7037 -3.4339 11 1 4.2412 2.3822 -4.1333 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 0.0053 15 6 2.3797 -3.6352 0.0104 16 7 1.6453 -4.9073 0.0166 17 6 1.0601 -5.1778 1.3552 18 6 0.8170 -6.7022 1.3727 19 6 1.8048 -7.2776 0.3370 20 6 2.5619 -6.0525 -0.2191 21 1 3.4980 -5.9073 0.3199 22 6 2.8259 -6.2195 -1.6934 23 6 3.9906 -6.8339 -2.1135 24 6 4.2236 -6.9830 -3.4719 25 6 3.2724 -6.5059 -4.3610 26 6 2.1317 -5.9025 -3.8670 27 7 1.9407 -5.7825 -2.5675 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5138 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6084 2.0283 0.5138 32 1 3.1500 1.1384 0.5137 33 1 4.0301 4.4440 -0.8504 34 1 0.7588 -2.5261 0.8956 35 1 0.7587 -2.5340 -0.8844 36 1 3.0064 -3.5813 -0.8798 37 1 3.0064 -3.5735 0.9001 38 1 1.7613 -4.8957 2.1406 39 1 0.1188 -4.6412 1.4741 40 1 -0.2095 -6.9252 1.0813 41 1 1.0270 -7.1077 2.3623 42 1 1.2633 -7.7830 -0.4626 43 1 2.5001 -7.9665 0.8168 44 1 4.7101 -7.1930 -1.3926 45 1 5.1246 -7.4595 -3.8292 46 1 3.4212 -6.6047 -5.4261 47 1 1.3863 -5.5279 -4.5529 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537851968.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:25 Heat of formation + Delta-G solvation = -15.387145 kcal Electronic energy + Delta-G solvation = -26549.790593 eV Core-core repulsion = 22924.496388 eV Total energy + Delta-G solvation = -3625.294206 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.38113 -40.67929 -39.41787 -36.63493 -34.84853 -34.35609 -33.34331 -32.83845 -30.91032 -29.32698 -29.02729 -27.30162 -25.60083 -24.55549 -24.20594 -23.43385 -21.58243 -21.35980 -19.88737 -18.72213 -18.13722 -17.86543 -17.17106 -17.01132 -16.81299 -16.62827 -16.29284 -16.12197 -15.57452 -15.18057 -14.88528 -14.79525 -14.38593 -14.13084 -14.05393 -13.84788 -13.74939 -13.46757 -13.25502 -13.20278 -13.07346 -12.85014 -12.68536 -12.62704 -12.36989 -12.26388 -12.21059 -12.06694 -11.84499 -11.73332 -11.38729 -10.73381 -10.66472 -10.62602 -10.18637 -9.84655 -9.44398 -9.42236 -8.24474 -6.39779 0.20749 0.45491 1.34100 1.38688 1.46169 1.81771 2.27091 2.40669 2.87336 3.00229 3.04696 3.32435 3.69013 3.79952 3.85806 3.95126 4.06609 4.07817 4.16110 4.24071 4.25086 4.32135 4.39853 4.40783 4.56547 4.64977 4.70584 4.74017 4.77981 4.86833 4.88315 4.91216 4.95379 4.98604 5.04124 5.07653 5.19773 5.20741 5.24879 5.30748 5.32317 5.54012 5.82160 5.82894 5.92816 6.03342 6.04300 6.66946 6.77006 7.22176 7.25701 7.46286 8.82502 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013012 B = 0.003355 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2151.388642 B = 8342.531329 C = 9818.612617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.546 4.546 5 H 0.050 0.950 6 C 0.008 3.992 7 N -0.928 5.928 8 Si 0.968 3.032 9 H -0.259 1.259 10 H -0.275 1.275 11 H -0.279 1.279 12 C 0.495 3.505 13 O -0.603 6.603 14 C -0.107 4.107 15 C 0.081 3.919 16 N -0.492 5.492 17 C 0.023 3.977 18 C -0.113 4.113 19 C -0.103 4.103 20 C 0.104 3.896 21 H 0.067 0.933 22 C 0.121 3.879 23 C -0.181 4.181 24 C -0.080 4.080 25 C -0.180 4.180 26 C 0.076 3.924 27 N -0.479 5.479 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.025 0.975 32 H -0.004 1.004 33 H 0.268 0.732 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.043 0.957 37 H 0.030 0.970 38 H 0.045 0.955 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.089 0.911 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.150 0.850 45 H 0.161 0.839 46 H 0.158 0.842 47 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.543 -26.162 -0.338 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.138 3.862 4 C -0.585 4.585 5 H 0.069 0.931 6 C -0.191 4.191 7 N -0.568 5.568 8 Si 0.792 3.208 9 H -0.183 1.183 10 H -0.200 1.200 11 H -0.205 1.205 12 C 0.284 3.716 13 O -0.485 6.485 14 C -0.147 4.147 15 C -0.048 4.048 16 N -0.215 5.215 17 C -0.105 4.105 18 C -0.151 4.151 19 C -0.141 4.141 20 C -0.005 4.005 21 H 0.085 0.915 22 C -0.018 4.018 23 C -0.201 4.201 24 C -0.106 4.106 25 C -0.199 4.199 26 C -0.081 4.081 27 N -0.188 5.188 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.043 0.957 32 H 0.014 0.986 33 H 0.077 0.923 34 H 0.134 0.866 35 H 0.124 0.876 36 H 0.061 0.939 37 H 0.048 0.952 38 H 0.063 0.937 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.108 0.892 42 H 0.082 0.918 43 H 0.110 0.890 44 H 0.168 0.832 45 H 0.179 0.821 46 H 0.176 0.824 47 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.047 -25.512 -0.390 26.471 hybrid contribution 1.985 0.622 -0.593 2.163 sum -5.063 -24.890 -0.984 25.419 Atomic orbital electron populations 1.21931 0.77768 1.03923 1.02679 1.48202 1.08495 1.06373 1.71125 1.18745 0.91053 0.80447 0.95977 1.21683 1.37128 1.06626 0.93044 0.93128 1.25869 0.94785 0.96324 1.02124 1.70043 1.38812 1.14808 1.33115 0.85471 0.78930 0.77394 0.79047 1.18332 1.19992 1.20496 1.21372 0.87768 0.86754 0.75738 1.90618 1.16774 1.88306 1.52791 1.21416 0.98684 0.88774 1.05851 1.21629 0.94200 0.89222 0.99741 1.65230 1.28533 0.99695 1.28092 1.23322 1.00488 0.97727 0.88940 1.22261 1.00065 0.93290 0.99522 1.22245 0.98139 0.95183 0.98539 1.21604 0.95920 0.92962 0.89995 0.91507 1.21207 0.90709 0.94356 0.95508 1.22192 0.98400 1.01628 0.97880 1.21928 0.99595 0.96422 0.92658 1.22480 0.95199 0.99756 1.02499 1.23226 0.97381 0.95615 0.91871 1.67505 1.31804 1.16315 1.03202 0.90852 0.91589 0.89023 0.95716 0.98560 0.92305 0.86617 0.87565 0.93868 0.95189 0.93689 0.88967 0.90461 0.89230 0.91780 0.89010 0.83218 0.82126 0.82415 0.81713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.50 10.24 127.77 1.31 3.81 16 2 N -0.61 -27.47 2.86 -851.14 -2.43 -29.90 16 3 C 0.26 14.64 5.16 85.64 0.44 15.08 16 4 C -0.55 -32.86 9.39 25.60 0.24 -32.62 16 5 H 0.05 3.03 7.81 -2.91 -0.02 3.00 16 6 C 0.01 0.47 5.46 84.65 0.46 0.94 16 7 N -0.93 -57.57 13.29 21.45 0.28 -57.28 16 8 Si 0.97 46.17 29.54 68.60 2.03 48.20 16 9 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 12 C 0.49 22.04 7.67 87.66 0.67 22.71 16 13 O -0.60 -33.22 15.56 -3.04 -0.05 -33.27 16 14 C -0.11 -3.38 4.37 29.85 0.13 -3.25 16 15 C 0.08 2.58 4.06 86.31 0.35 2.94 16 16 N -0.49 -12.39 4.61 -861.02 -3.97 -16.36 16 17 C 0.02 0.43 5.91 86.45 0.51 0.94 16 18 C -0.11 -1.63 7.00 31.49 0.22 -1.41 16 19 C -0.10 -1.67 6.54 31.49 0.21 -1.46 16 20 C 0.10 2.34 2.51 44.32 0.11 2.45 16 21 H 0.07 1.48 7.97 -2.39 -0.02 1.46 16 22 C 0.12 2.98 5.40 42.55 0.23 3.21 16 23 C -0.18 -3.62 9.77 22.36 0.22 -3.41 16 24 C -0.08 -1.39 10.18 22.47 0.23 -1.16 16 25 C -0.18 -3.25 10.11 22.36 0.23 -3.02 16 26 C 0.08 1.74 11.18 84.67 0.95 2.68 16 27 N -0.48 -13.22 9.79 -183.89 -1.80 -15.03 16 28 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 29 H 0.07 2.19 8.07 -2.39 -0.02 2.17 16 30 H 0.09 2.32 6.45 -2.39 -0.02 2.30 16 31 H 0.02 1.40 8.07 -2.39 -0.02 1.38 16 32 H 0.00 -0.24 7.42 -2.39 -0.02 -0.26 16 33 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 34 H 0.12 2.89 7.43 -2.38 -0.02 2.87 16 35 H 0.11 3.19 7.41 -2.39 -0.02 3.17 16 36 H 0.04 1.66 7.74 -2.39 -0.02 1.64 16 37 H 0.03 1.00 7.72 -2.39 -0.02 0.99 16 38 H 0.04 0.86 7.75 -2.39 -0.02 0.84 16 39 H 0.09 1.60 7.85 -2.39 -0.02 1.58 16 40 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.06 1.17 7.86 -2.39 -0.02 1.15 16 43 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 44 H 0.15 2.25 8.06 -2.91 -0.02 2.23 16 45 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 46 H 0.16 1.89 8.06 -2.91 -0.02 1.86 16 47 H 0.17 3.08 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -81.25 384.57 1.50 -79.74 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: 0.94 Total: 15.46 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 6.50 Total: 8.43 kcal Atomic # 7 Polarization: -110.65 SS G_CDS: -7.92 Total: -118.56 kcal Atomic # 8 Polarization: -33.22 SS G_CDS: -0.05 Total: -33.27 kcal Atomic # 14 Polarization: 46.17 SS G_CDS: 2.03 Total: 48.20 kcal Total: -81.25 1.50 -79.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537851968.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.355 kcal (2) G-P(sol) polarization free energy of solvation -81.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds