Wall clock time and date at job start Tue Mar 31 2020 11:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99796 * 2 1 4 4 C 1.50691 * 109.47195 * 269.99449 * 3 2 1 5 5 H 1.08003 * 120.00430 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00287 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99671 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00401 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47101 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47125 * 119.99710 * 8 6 4 11 11 H 1.48501 * 109.47599 * 239.99814 * 8 6 4 12 12 C 1.34779 * 119.99771 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99528 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00151 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.47164 * 180.02562 * 14 12 2 16 16 N 1.46897 * 109.47288 * 179.97438 * 15 14 12 17 17 C 1.47846 * 111.00201 * 286.49696 * 16 15 14 18 18 C 1.54900 * 104.79814 * 213.63742 * 17 16 15 19 19 C 1.55143 * 101.65484 * 37.06567 * 18 17 16 20 20 C 1.47446 * 110.99949 * 165.65127 * 16 15 14 21 21 H 1.08993 * 109.88888 * 242.82423 * 20 16 15 22 22 C 1.50700 * 109.88853 * 3.85581 * 20 16 15 23 23 C 1.38224 * 119.61678 * 247.10497 * 22 20 16 24 24 C 1.38624 * 119.16260 * 179.97438 * 23 22 20 25 25 C 1.38671 * 118.42319 * 359.97438 * 24 23 22 26 26 C 1.38185 * 119.15787 * 0.02562 * 25 24 23 27 27 N 1.31856 * 119.62114 * 66.82924 * 22 20 16 28 28 H 1.08994 * 109.47657 * 269.99984 * 1 2 3 29 29 H 1.08997 * 109.46909 * 30.00684 * 1 2 3 30 30 H 1.09003 * 109.46705 * 149.99905 * 1 2 3 31 31 H 1.08996 * 109.47559 * 30.00004 * 3 2 1 32 32 H 1.09008 * 109.46632 * 149.99767 * 3 2 1 33 33 H 0.97001 * 119.99798 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47315 * 59.99685 * 14 12 2 35 35 H 1.08999 * 109.47040 * 299.99689 * 14 12 2 36 36 H 1.09001 * 109.47177 * 59.99885 * 15 14 12 37 37 H 1.09003 * 109.47246 * 299.99909 * 15 14 12 38 38 H 1.09002 * 110.36942 * 332.46524 * 17 16 15 39 39 H 1.09000 * 110.37356 * 94.80620 * 17 16 15 40 40 H 1.09004 * 110.99049 * 278.97760 * 18 17 16 41 41 H 1.09001 * 110.99368 * 155.15864 * 18 17 16 42 42 H 1.08994 * 110.70986 * 205.96826 * 19 18 17 43 43 H 1.09002 * 110.85145 * 82.79976 * 19 18 17 44 44 H 1.08005 * 120.41737 * 359.97438 * 23 22 20 45 45 H 1.08007 * 120.78903 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.42356 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.61613 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4378 3.4169 -3.4338 9 1 2.8589 2.4175 -4.3672 10 1 2.8007 4.7380 -3.6666 11 1 4.9003 3.5246 -3.6678 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0018 16 7 1.6451 -4.9074 0.0024 17 6 1.0402 -5.1694 1.3258 18 6 1.0952 -6.7089 1.4882 19 6 2.4558 -7.0458 0.8233 20 6 2.5360 -6.0321 -0.3375 21 1 2.2055 -6.4997 -1.2648 22 6 3.9514 -5.5372 -0.4891 23 6 4.5550 -5.5643 -1.7323 24 6 5.8571 -5.1063 -1.8611 25 6 6.5061 -4.6355 -0.7297 26 6 5.8383 -4.6391 0.4801 27 7 4.5977 -5.0783 0.5646 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0310 4.4435 -0.8503 34 1 0.7591 -2.5302 -0.8896 35 1 0.7584 -2.5299 0.8903 36 1 3.0056 -3.5771 0.8922 37 1 3.0070 -3.5780 -0.8877 38 1 1.6201 -4.6840 2.1108 39 1 0.0071 -4.8223 1.3462 40 1 0.2721 -7.1871 0.9572 41 1 1.0947 -6.9907 2.5411 42 1 2.4567 -8.0674 0.4435 43 1 3.2776 -6.8956 1.5236 44 1 4.0190 -5.9376 -2.5924 45 1 6.3542 -5.1159 -2.8199 46 1 7.5206 -4.2708 -0.7932 47 1 6.3367 -4.2737 1.3659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000537851969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:30 Heat of formation + Delta-G solvation = 13.880682 kcal Electronic energy + Delta-G solvation = -27140.419301 eV Core-core repulsion = 23516.394243 eV Total energy + Delta-G solvation = -3624.025057 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.84703 -38.98797 -38.27805 -34.76249 -33.20438 -32.54053 -32.46769 -32.04758 -29.42301 -28.21936 -27.49968 -25.68842 -24.07393 -23.49371 -23.19357 -22.10491 -21.06596 -19.95514 -18.26619 -17.02477 -16.68889 -16.49708 -16.08097 -15.70314 -15.47035 -15.23791 -15.07050 -14.76695 -14.41293 -13.97857 -13.82775 -13.45216 -13.24037 -12.91832 -12.67776 -12.59132 -12.15069 -12.09796 -12.00411 -11.76371 -11.57689 -11.35955 -11.31710 -11.19402 -11.04451 -10.89497 -10.82495 -10.58425 -10.52837 -10.12997 -9.78041 -9.57052 -9.48016 -9.01901 -8.79977 -8.41415 -8.26479 -7.56734 -6.01737 -4.06118 1.09698 1.29723 3.30624 3.37644 3.41883 3.54808 3.65255 3.90760 4.13422 4.30598 4.47809 4.54165 4.63399 4.66407 4.89038 5.01298 5.09285 5.15990 5.29449 5.30787 5.33320 5.37067 5.43792 5.53777 5.57088 5.68214 5.69597 5.71053 5.77660 5.82374 5.91411 5.94548 6.00639 6.10577 6.16785 6.20256 6.23011 6.28701 6.33011 6.69673 6.95354 7.08024 7.12342 7.48895 7.61012 7.95444 7.99009 8.27511 8.50032 8.94507 9.18409 9.58975 11.06352 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003727 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.062021 B = 7510.986036 C = 8793.274806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.604 5.604 3 C 0.245 3.755 4 C -0.523 4.523 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.504 3.496 13 O -0.544 6.544 14 C -0.133 4.133 15 C 0.067 3.933 16 N -0.516 5.516 17 C 0.040 3.960 18 C -0.126 4.126 19 C -0.130 4.130 20 C 0.124 3.876 21 H 0.098 0.902 22 C 0.116 3.884 23 C -0.166 4.166 24 C -0.073 4.073 25 C -0.171 4.171 26 C 0.109 3.891 27 N -0.474 5.474 28 H 0.042 0.958 29 H 0.072 0.928 30 H 0.058 0.942 31 H 0.031 0.969 32 H 0.042 0.958 33 H 0.262 0.738 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.051 0.949 39 H 0.080 0.920 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.132 0.868 45 H 0.132 0.868 46 H 0.133 0.867 47 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.976 -22.190 2.229 22.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.337 5.337 3 C 0.126 3.874 4 C -0.562 4.562 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.291 3.709 13 O -0.422 6.422 14 C -0.174 4.174 15 C -0.061 4.061 16 N -0.239 5.239 17 C -0.088 4.088 18 C -0.164 4.164 19 C -0.169 4.169 20 C 0.015 3.985 21 H 0.116 0.884 22 C -0.022 4.022 23 C -0.187 4.187 24 C -0.099 4.099 25 C -0.191 4.191 26 C -0.049 4.049 27 N -0.183 5.183 28 H 0.061 0.939 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.049 0.951 32 H 0.060 0.940 33 H 0.072 0.928 34 H 0.109 0.891 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.098 0.902 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.150 0.850 45 H 0.150 0.850 46 H 0.151 0.849 47 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.071 -21.926 2.702 22.304 hybrid contribution 1.261 0.648 -1.343 1.953 sum -1.810 -21.278 1.360 21.398 Atomic orbital electron populations 1.21624 0.81510 1.02562 1.00289 1.48150 1.06140 1.07847 1.71527 1.19260 0.92524 0.78239 0.97414 1.21486 1.36186 1.06167 0.92384 0.92478 1.24941 0.95429 0.96420 0.97391 1.69950 1.38577 1.14337 1.30617 0.86454 0.78045 0.78310 0.84691 1.19812 1.20944 1.20900 1.20329 0.88093 0.85174 0.77333 1.90656 1.14007 1.87369 1.50205 1.21611 0.99274 0.92842 1.03665 1.22190 0.94455 0.86700 1.02790 1.63899 1.30129 1.01723 1.28194 1.23120 1.00061 0.95479 0.90100 1.22672 0.97198 0.95798 1.00768 1.22820 0.98504 0.98328 0.97254 1.21467 0.85464 0.91806 0.99752 0.88423 1.21461 0.96271 0.95187 0.89313 1.21919 0.96064 1.02272 0.98411 1.21549 0.94444 0.95002 0.98915 1.22121 1.01808 1.01187 0.94017 1.22693 0.90059 0.94577 0.97533 1.67461 1.08701 1.09713 1.32464 0.93899 0.90915 0.92326 0.95119 0.93965 0.92830 0.89086 0.90007 0.91851 0.90777 0.93022 0.90207 0.90791 0.90892 0.91078 0.90103 0.84973 0.84978 0.84903 0.82877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.41 10.24 59.85 0.61 2.02 16 2 N -0.60 -13.46 2.86 -182.96 -0.52 -13.98 16 3 C 0.24 6.65 5.16 -5.20 -0.03 6.62 16 4 C -0.52 -15.29 9.39 -34.44 -0.32 -15.61 16 5 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -27.13 13.29 55.43 0.74 -26.40 16 8 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 9 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 12 C 0.50 11.09 7.67 -10.99 -0.08 11.01 16 13 O -0.54 -14.32 15.56 5.55 0.09 -14.23 16 14 C -0.13 -2.19 4.35 -27.88 -0.12 -2.31 16 15 C 0.07 1.08 2.89 -3.83 -0.01 1.07 16 16 N -0.52 -6.67 5.13 -224.73 -1.15 -7.82 16 17 C 0.04 0.44 6.00 -2.30 -0.01 0.43 16 18 C -0.13 -1.12 7.08 -24.59 -0.17 -1.30 16 19 C -0.13 -1.27 6.42 -24.91 -0.16 -1.43 16 20 C 0.12 1.42 3.72 -67.87 -0.25 1.17 16 21 H 0.10 0.99 7.91 -51.93 -0.41 0.58 16 22 C 0.12 1.51 3.45 -82.59 -0.28 1.23 16 23 C -0.17 -1.98 9.49 -39.44 -0.37 -2.35 16 24 C -0.07 -0.84 10.18 -39.28 -0.40 -1.24 16 25 C -0.17 -2.05 10.11 -39.44 -0.40 -2.45 16 26 C 0.11 1.44 11.18 -17.55 -0.20 1.25 16 27 N -0.47 -6.78 7.42 -9.47 -0.07 -6.86 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 30 H 0.06 0.82 6.44 -51.93 -0.33 0.48 16 31 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 32 H 0.04 1.29 7.42 -51.92 -0.39 0.90 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 34 H 0.09 1.39 7.40 -51.93 -0.38 1.01 16 35 H 0.08 1.17 7.61 -51.93 -0.40 0.77 16 36 H 0.06 1.16 6.22 -51.93 -0.32 0.83 16 37 H 0.07 1.37 6.48 -51.93 -0.34 1.04 16 38 H 0.05 0.64 7.55 -51.93 -0.39 0.25 16 39 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.91 7.22 -51.93 -0.38 0.53 16 44 H 0.13 1.27 7.97 -52.48 -0.42 0.85 16 45 H 0.13 1.18 8.06 -52.48 -0.42 0.76 16 46 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 47 H 0.15 1.74 8.06 -52.49 -0.42 1.32 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -34.98 377.28 -10.08 -45.06 By element: Atomic # 1 Polarization: 9.06 SS G_CDS: -7.52 Total: 1.53 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -2.31 Total: -0.24 kcal Atomic # 7 Polarization: -54.05 SS G_CDS: -1.01 Total: -55.06 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.98 -10.08 -45.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537851969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.941 kcal (2) G-P(sol) polarization free energy of solvation -34.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.060 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds