Wall clock time and date at job start Tue Mar 31 2020 11:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99796 * 2 1 4 4 C 1.50691 * 109.47195 * 269.99449 * 3 2 1 5 5 H 1.08003 * 120.00430 * 0.02562 * 4 3 2 6 6 C 1.37877 * 120.00287 * 180.02562 * 4 3 2 7 7 N 1.31517 * 119.99671 * 359.97438 * 6 4 3 8 8 Si 1.86796 * 120.00401 * 180.02562 * 6 4 3 9 9 H 1.48502 * 109.47101 * 0.02562 * 8 6 4 10 10 H 1.48507 * 109.47125 * 119.99710 * 8 6 4 11 11 H 1.48501 * 109.47599 * 239.99814 * 8 6 4 12 12 C 1.34779 * 119.99771 * 179.97438 * 2 1 3 13 13 O 1.21285 * 119.99528 * 180.02562 * 12 2 1 14 14 C 1.50697 * 120.00151 * 0.02562 * 12 2 1 15 15 C 1.53001 * 109.47164 * 180.02562 * 14 12 2 16 16 N 1.46897 * 109.47288 * 179.97438 * 15 14 12 17 17 C 1.47846 * 111.00201 * 286.49696 * 16 15 14 18 18 C 1.54900 * 104.79814 * 213.63742 * 17 16 15 19 19 C 1.55143 * 101.65484 * 37.06567 * 18 17 16 20 20 C 1.47446 * 110.99949 * 165.65127 * 16 15 14 21 21 H 1.08993 * 109.88888 * 242.82423 * 20 16 15 22 22 C 1.50700 * 109.88853 * 3.85581 * 20 16 15 23 23 C 1.38224 * 119.61678 * 247.10497 * 22 20 16 24 24 C 1.38624 * 119.16260 * 179.97438 * 23 22 20 25 25 C 1.38671 * 118.42319 * 359.97438 * 24 23 22 26 26 C 1.38185 * 119.15787 * 0.02562 * 25 24 23 27 27 N 1.31856 * 119.62114 * 66.82924 * 22 20 16 28 28 H 1.08994 * 109.47657 * 269.99984 * 1 2 3 29 29 H 1.08997 * 109.46909 * 30.00684 * 1 2 3 30 30 H 1.09003 * 109.46705 * 149.99905 * 1 2 3 31 31 H 1.08996 * 109.47559 * 30.00004 * 3 2 1 32 32 H 1.09008 * 109.46632 * 149.99767 * 3 2 1 33 33 H 0.97001 * 119.99798 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47315 * 59.99685 * 14 12 2 35 35 H 1.08999 * 109.47040 * 299.99689 * 14 12 2 36 36 H 1.09001 * 109.47177 * 59.99885 * 15 14 12 37 37 H 1.09003 * 109.47246 * 299.99909 * 15 14 12 38 38 H 1.09002 * 110.36942 * 332.46524 * 17 16 15 39 39 H 1.09000 * 110.37356 * 94.80620 * 17 16 15 40 40 H 1.09004 * 110.99049 * 278.97760 * 18 17 16 41 41 H 1.09001 * 110.99368 * 155.15864 * 18 17 16 42 42 H 1.08994 * 110.70986 * 205.96826 * 19 18 17 43 43 H 1.09002 * 110.85145 * 82.79976 * 19 18 17 44 44 H 1.08005 * 120.41737 * 359.97438 * 23 22 20 45 45 H 1.08007 * 120.78903 * 179.97438 * 24 23 22 46 46 H 1.07997 * 120.42356 * 180.02562 * 25 24 23 47 47 H 1.08001 * 119.61613 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4207 5 1 2.0976 1.0961 -2.2417 6 6 3.1270 2.8774 -1.6727 7 7 3.5542 3.6175 -0.6731 8 14 3.4378 3.4169 -3.4338 9 1 2.8589 2.4175 -4.3672 10 1 2.8007 4.7380 -3.6666 11 1 4.9003 3.5246 -3.6678 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0005 15 6 2.3796 -3.6353 0.0018 16 7 1.6451 -4.9074 0.0024 17 6 1.0402 -5.1694 1.3258 18 6 1.0952 -6.7089 1.4882 19 6 2.4558 -7.0458 0.8233 20 6 2.5360 -6.0321 -0.3375 21 1 2.2055 -6.4997 -1.2648 22 6 3.9514 -5.5372 -0.4891 23 6 4.5550 -5.5643 -1.7323 24 6 5.8571 -5.1063 -1.8611 25 6 6.5061 -4.6355 -0.7297 26 6 5.8383 -4.6391 0.4801 27 7 4.5977 -5.0783 0.5646 28 1 -0.3634 0.0000 1.0276 29 1 -0.3633 0.8899 -0.5139 30 1 -0.3633 -0.8900 -0.5139 31 1 1.6085 2.0284 0.5138 32 1 3.1499 1.1383 0.5139 33 1 4.0310 4.4435 -0.8503 34 1 0.7591 -2.5302 -0.8896 35 1 0.7584 -2.5299 0.8903 36 1 3.0056 -3.5771 0.8922 37 1 3.0070 -3.5780 -0.8877 38 1 1.6201 -4.6840 2.1108 39 1 0.0071 -4.8223 1.3462 40 1 0.2721 -7.1871 0.9572 41 1 1.0947 -6.9907 2.5411 42 1 2.4567 -8.0674 0.4435 43 1 3.2776 -6.8956 1.5236 44 1 4.0190 -5.9376 -2.5924 45 1 6.3542 -5.1159 -2.8199 46 1 7.5206 -4.2708 -0.7932 47 1 6.3367 -4.2737 1.3659 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000537851969.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:45:29 Heat of formation + Delta-G solvation = -9.519456 kcal Electronic energy + Delta-G solvation = -27141.434007 eV Core-core repulsion = 23516.394243 eV Total energy + Delta-G solvation = -3625.039764 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.81051 -40.61865 -39.31478 -36.62554 -34.82909 -34.23157 -33.42816 -32.95721 -30.84090 -29.33106 -29.03744 -27.29900 -25.59825 -24.63728 -24.16463 -23.62315 -21.96188 -20.94130 -19.93365 -18.72612 -18.14187 -17.83766 -17.27672 -17.00724 -16.74835 -16.68163 -16.41301 -16.00050 -15.77433 -15.36761 -15.07626 -14.40446 -14.32773 -14.29295 -14.10764 -13.79218 -13.65885 -13.46236 -13.41394 -13.15051 -13.06036 -12.87277 -12.68410 -12.56600 -12.23491 -12.19442 -12.18762 -11.98910 -11.89805 -11.69582 -11.53742 -10.73350 -10.67327 -10.61456 -10.43825 -9.97990 -9.43272 -9.29472 -8.24666 -6.39940 0.15396 0.36468 1.34178 1.36373 1.48691 1.82711 2.27189 2.40666 2.77135 3.04292 3.08780 3.28778 3.68716 3.75724 3.78569 3.89904 4.01297 4.09022 4.19083 4.22335 4.26262 4.34882 4.39819 4.49708 4.62094 4.63865 4.69446 4.71354 4.78997 4.86530 4.91233 4.94175 4.99366 5.02937 5.05594 5.11740 5.16266 5.19967 5.24776 5.27324 5.43198 5.54357 5.77723 5.82830 5.95690 6.01784 6.04031 6.67413 6.77391 7.03138 7.25904 7.47226 8.82728 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.013878 B = 0.003727 C = 0.003183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2017.062021 B = 7510.986036 C = 8793.274806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.259 3.741 4 C -0.542 4.542 5 H 0.052 0.948 6 C 0.007 3.993 7 N -0.929 5.929 8 Si 0.969 3.031 9 H -0.267 1.267 10 H -0.267 1.267 11 H -0.281 1.281 12 C 0.494 3.506 13 O -0.600 6.600 14 C -0.115 4.115 15 C 0.085 3.915 16 N -0.511 5.511 17 C 0.034 3.966 18 C -0.116 4.116 19 C -0.126 4.126 20 C 0.118 3.882 21 H 0.117 0.883 22 C 0.100 3.900 23 C -0.173 4.173 24 C -0.081 4.081 25 C -0.180 4.180 26 C 0.081 3.919 27 N -0.496 5.496 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.094 0.906 31 H 0.023 0.977 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.035 0.965 37 H 0.046 0.954 38 H 0.032 0.968 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.060 0.940 44 H 0.156 0.844 45 H 0.159 0.841 46 H 0.152 0.848 47 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.073 -23.819 0.574 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.343 5.343 3 C 0.138 3.862 4 C -0.581 4.581 5 H 0.070 0.930 6 C -0.192 4.192 7 N -0.569 5.569 8 Si 0.793 3.207 9 H -0.191 1.191 10 H -0.192 1.192 11 H -0.207 1.207 12 C 0.283 3.717 13 O -0.481 6.481 14 C -0.155 4.155 15 C -0.044 4.044 16 N -0.234 5.234 17 C -0.093 4.093 18 C -0.154 4.154 19 C -0.165 4.165 20 C 0.010 3.990 21 H 0.135 0.865 22 C -0.038 4.038 23 C -0.194 4.194 24 C -0.107 4.107 25 C -0.200 4.200 26 C -0.076 4.076 27 N -0.207 5.207 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.041 0.959 32 H 0.012 0.988 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.050 0.950 39 H 0.115 0.885 40 H 0.111 0.889 41 H 0.102 0.898 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.174 0.826 45 H 0.177 0.823 46 H 0.170 0.830 47 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -5.221 -23.575 1.060 24.169 hybrid contribution 1.926 1.148 -0.770 2.371 sum -3.295 -22.426 0.290 22.669 Atomic orbital electron populations 1.21937 0.77783 1.04047 1.02572 1.48201 1.08479 1.06329 1.71250 1.18737 0.90957 0.80451 0.96074 1.21719 1.36845 1.06588 0.92939 0.92994 1.25889 0.94822 0.96357 1.02148 1.70066 1.38944 1.14818 1.33048 0.85345 0.77925 0.78474 0.78929 1.19122 1.19173 1.20659 1.21354 0.87819 0.86712 0.75840 1.90626 1.16730 1.88250 1.52529 1.21535 0.98890 0.89227 1.05885 1.21835 0.93913 0.88507 1.00172 1.63951 1.29585 1.00672 1.29212 1.23244 1.00263 0.97269 0.88553 1.22666 0.97076 0.93935 1.01722 1.22788 0.98399 0.98998 0.96318 1.21688 0.84429 0.91626 1.01261 0.86496 1.21811 0.97120 0.95342 0.89561 1.22277 0.96438 1.01836 0.98804 1.21954 0.94600 0.94308 0.99824 1.22404 1.02760 1.01000 0.93826 1.22968 0.90438 0.95519 0.98633 1.67429 1.09189 1.10446 1.33594 0.91149 0.91507 0.88774 0.95880 0.98773 0.92363 0.86894 0.87120 0.94663 0.93549 0.94980 0.88514 0.88915 0.89760 0.88897 0.92168 0.82603 0.82345 0.83040 0.82427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.46 10.24 127.77 1.31 3.77 16 2 N -0.61 -27.40 2.86 -851.14 -2.43 -29.84 16 3 C 0.26 14.64 5.16 85.63 0.44 15.08 16 4 C -0.54 -32.36 9.39 25.60 0.24 -32.12 16 5 H 0.05 3.08 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.39 5.46 84.65 0.46 0.85 16 7 N -0.93 -57.45 13.29 21.45 0.28 -57.16 16 8 Si 0.97 45.79 29.54 68.60 2.03 47.82 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.40 16 12 C 0.49 22.03 7.67 87.66 0.67 22.70 16 13 O -0.60 -33.17 15.56 -3.04 -0.05 -33.22 16 14 C -0.12 -3.61 4.35 29.85 0.13 -3.48 16 15 C 0.08 2.73 2.89 86.30 0.25 2.98 16 16 N -0.51 -12.33 5.13 -864.90 -4.44 -16.77 16 17 C 0.03 0.69 6.00 86.77 0.52 1.21 16 18 C -0.12 -1.74 7.08 31.98 0.23 -1.51 16 19 C -0.13 -2.24 6.42 31.78 0.20 -2.04 16 20 C 0.12 2.54 3.72 44.51 0.17 2.71 16 21 H 0.12 2.05 7.91 -2.39 -0.02 2.03 16 22 C 0.10 2.61 3.45 42.55 0.15 2.75 16 23 C -0.17 -4.01 9.49 22.36 0.21 -3.80 16 24 C -0.08 -1.83 10.18 22.47 0.23 -1.60 16 25 C -0.18 -4.43 10.11 22.36 0.23 -4.20 16 26 C 0.08 2.30 11.18 84.67 0.95 3.25 16 27 N -0.50 -14.89 7.42 -183.89 -1.37 -16.25 16 28 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 29 H 0.07 2.18 8.07 -2.39 -0.02 2.16 16 30 H 0.09 2.28 6.44 -2.39 -0.02 2.26 16 31 H 0.02 1.31 8.07 -2.39 -0.02 1.30 16 32 H -0.01 -0.38 7.42 -2.38 -0.02 -0.40 16 33 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 34 H 0.11 3.10 7.40 -2.39 -0.02 3.08 16 35 H 0.11 2.86 7.61 -2.39 -0.02 2.84 16 36 H 0.04 1.34 6.22 -2.39 -0.01 1.33 16 37 H 0.05 1.75 6.48 -2.39 -0.02 1.73 16 38 H 0.03 0.78 7.55 -2.39 -0.02 0.76 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 41 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.33 7.22 -2.39 -0.02 1.32 16 44 H 0.16 2.70 7.97 -2.91 -0.02 2.68 16 45 H 0.16 2.59 8.06 -2.91 -0.02 2.57 16 46 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 47 H 0.16 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -80.25 377.28 1.36 -78.89 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.95 Total: 19.97 kcal Atomic # 6 Polarization: 0.17 SS G_CDS: 6.38 Total: 6.55 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -7.95 Total: -120.02 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: -0.05 Total: -33.22 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -80.25 1.36 -78.89 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000537851969.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.371 kcal (2) G-P(sol) polarization free energy of solvation -80.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds