Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46960 * 110.99901 * 2 1 4 4 C 1.53056 * 109.36221 * 183.19112 * 3 2 1 5 5 N 1.46949 * 109.36448 * 301.59364 * 4 3 2 6 6 C 1.46894 * 111.00270 * 183.19086 * 5 4 3 7 7 C 1.52996 * 109.47379 * 76.15111 * 6 5 4 8 8 H 1.09004 * 109.47394 * 295.88947 * 7 6 5 9 9 N 1.46500 * 109.47174 * 55.88615 * 7 6 5 10 10 C 1.34769 * 120.00446 * 208.14342 * 9 7 6 11 11 O 1.21683 * 119.99926 * 359.97438 * 10 9 7 12 12 C 1.46379 * 119.99981 * 179.97438 * 10 9 7 13 13 H 1.07990 * 120.00212 * 0.02562 * 12 10 9 14 14 C 1.40052 * 119.99817 * 180.02562 * 12 10 9 15 15 N 1.30671 * 120.00128 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00042 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47330 * 59.99265 * 16 14 12 18 18 H 1.48500 * 109.47078 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46854 * 299.99749 * 16 14 12 20 20 C 1.50697 * 109.47359 * 175.88569 * 7 6 5 21 21 C 1.38243 * 119.99789 * 100.00459 * 20 7 6 22 22 C 1.38234 * 119.99547 * 179.97438 * 21 20 7 23 23 C 1.38226 * 120.00467 * 359.97188 * 22 21 20 24 24 C 1.38234 * 120.00127 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00259 * 279.97770 * 20 7 6 26 26 C 1.46962 * 110.88105 * 59.32454 * 5 4 3 27 27 C 1.46959 * 111.00128 * 123.79551 * 2 1 3 28 28 H 1.08994 * 109.47344 * 59.99786 * 1 2 3 29 29 H 1.09000 * 109.46680 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46778 * 299.99900 * 1 2 3 31 31 H 1.08997 * 109.48974 * 63.22498 * 3 2 1 32 32 H 1.09001 * 109.50689 * 303.16578 * 3 2 1 33 33 H 1.09000 * 109.48832 * 181.63156 * 4 3 2 34 34 H 1.08998 * 109.50386 * 61.57784 * 4 3 2 35 35 H 1.09006 * 109.46929 * 316.15032 * 6 5 4 36 36 H 1.09000 * 109.47582 * 196.15420 * 6 5 4 37 37 H 0.97009 * 119.99675 * 28.14132 * 9 7 6 38 38 H 0.96995 * 120.00295 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.00175 * 359.97438 * 21 20 7 40 40 H 1.08007 * 119.99556 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.00139 * 179.72405 * 23 22 21 42 42 H 1.07996 * 120.00341 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00157 * 0.02562 * 25 20 7 44 44 H 1.08997 * 109.48732 * 60.64145 * 26 5 4 45 45 H 1.08996 * 109.49313 * 180.71353 * 26 5 4 46 46 H 1.08997 * 109.49096 * 296.77857 * 27 2 1 47 47 H 1.09001 * 109.48649 * 56.82471 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0502 0.5660 1.0597 6 6 5.5191 0.5660 1.0597 7 6 6.0292 1.9219 1.5518 8 1 5.7273 2.7000 0.8506 9 7 5.4616 2.2073 2.8719 10 6 5.2757 3.4832 3.2640 11 8 5.5797 4.3982 2.5217 12 6 4.7081 3.7683 4.5828 13 1 4.4387 2.9562 5.2417 14 6 4.5144 5.0942 4.9901 15 7 4.8409 6.0768 4.1930 16 14 3.7908 5.4581 6.6733 17 1 4.6692 4.8846 7.7243 18 1 3.6892 6.9276 6.8613 19 1 2.4390 4.8512 6.7726 20 6 7.5327 1.8882 1.6480 21 6 8.3022 2.4446 0.6434 22 6 9.6814 2.4142 0.7320 23 6 10.2910 1.8280 1.8253 24 6 9.5216 1.2717 2.8299 25 6 8.1424 1.3015 2.7411 26 6 3.5236 -0.8060 1.0598 27 6 1.9957 -0.7631 1.1401 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6938 1.8774 0.9174 32 1 1.6014 1.9132 -0.8601 33 1 3.9179 2.3448 -0.0513 34 1 3.8256 0.8482 -1.0107 35 1 5.8824 0.3866 0.0477 36 1 5.8825 -0.2207 1.7209 37 1 5.2196 1.4778 3.4638 38 1 4.7064 6.9951 4.4748 39 1 7.8259 2.9031 -0.2106 40 1 10.2826 2.8493 -0.0527 41 1 11.3686 1.8003 1.8923 42 1 9.9979 0.8133 3.6840 43 1 7.5412 0.8668 3.5260 44 1 3.8254 -1.3114 0.1424 45 1 3.9179 -1.3469 1.9200 46 1 1.6939 -0.2820 2.0704 47 1 1.6011 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000548120928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = 3.796998 kcal Electronic energy + Delta-G solvation = -27322.003997 eV Core-core repulsion = 23697.541678 eV Total energy + Delta-G solvation = -3624.462319 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.54505 -38.75263 -37.06349 -35.58611 -33.46935 -32.27249 -30.85581 -30.61951 -30.23199 -29.10906 -26.82459 -25.64565 -23.84913 -23.44558 -22.25581 -22.03092 -20.62308 -19.70300 -19.10268 -17.21290 -16.53003 -16.07253 -15.45473 -15.20341 -14.96340 -14.85885 -14.79512 -14.53477 -14.41741 -13.95732 -13.77678 -13.42169 -13.01832 -12.89970 -12.63538 -12.46149 -12.29063 -12.10303 -11.96161 -11.72154 -11.65161 -11.17097 -11.09587 -11.05912 -10.97416 -10.80920 -10.70612 -10.42787 -10.36799 -10.30332 -10.16778 -8.77809 -8.49098 -8.41090 -8.30579 -8.04819 -7.48512 -7.37220 -6.09797 -4.53805 1.78769 1.83408 3.19386 3.24185 3.25914 3.91976 3.98794 4.16350 4.24069 4.68467 4.85424 4.93621 5.03885 5.18880 5.26145 5.30591 5.32775 5.38889 5.41908 5.49024 5.53686 5.55986 5.57103 5.65276 5.69774 5.77900 5.82849 5.87447 5.93090 5.96613 5.99021 6.08165 6.14920 6.18336 6.33610 6.42260 6.54637 6.86863 6.88564 6.96786 6.98937 7.12758 7.26817 7.29995 7.43716 7.51222 8.05991 8.23467 8.43970 9.11564 9.68234 10.70070 10.91276 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007385 B = 0.005810 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3790.599960 B = 4817.718354 C = 7718.985908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.547 5.547 3 C 0.057 3.943 4 C 0.061 3.939 5 N -0.525 5.525 6 C 0.057 3.943 7 C 0.198 3.802 8 H 0.084 0.916 9 N -0.740 5.740 10 C 0.562 3.438 11 O -0.581 6.581 12 C -0.543 4.543 13 H 0.064 0.936 14 C 0.089 3.911 15 N -0.769 5.769 16 Si 0.903 3.097 17 H -0.269 1.269 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.075 4.075 21 C -0.108 4.108 22 C -0.125 4.125 23 C -0.132 4.132 24 C -0.126 4.126 25 C -0.098 4.098 26 C 0.059 3.941 27 C 0.057 3.943 28 H 0.066 0.934 29 H 0.064 0.936 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.076 0.924 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.040 0.960 36 H 0.073 0.927 37 H 0.380 0.620 38 H 0.266 0.734 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.113 0.887 42 H 0.115 0.885 43 H 0.119 0.881 44 H 0.036 0.964 45 H 0.077 0.923 46 H 0.045 0.955 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.436 -13.864 -6.990 15.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.071 4.071 4 C -0.068 4.068 5 N -0.250 5.250 6 C -0.071 4.071 7 C 0.090 3.910 8 H 0.102 0.898 9 N -0.393 5.393 10 C 0.366 3.634 11 O -0.464 6.464 12 C -0.580 4.580 13 H 0.082 0.918 14 C -0.130 4.130 15 N -0.398 5.398 16 Si 0.728 3.272 17 H -0.194 1.194 18 H -0.207 1.207 19 H -0.194 1.194 20 C -0.077 4.077 21 C -0.127 4.127 22 C -0.143 4.143 23 C -0.150 4.150 24 C -0.144 4.144 25 C -0.116 4.116 26 C -0.069 4.069 27 C -0.071 4.071 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.045 0.955 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.103 0.897 34 H 0.054 0.946 35 H 0.059 0.941 36 H 0.092 0.908 37 H 0.212 0.788 38 H 0.077 0.923 39 H 0.135 0.865 40 H 0.133 0.867 41 H 0.131 0.869 42 H 0.133 0.867 43 H 0.137 0.863 44 H 0.054 0.946 45 H 0.096 0.904 46 H 0.064 0.936 47 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -0.235 -12.967 -7.570 15.017 hybrid contribution -0.435 -0.032 1.225 1.300 sum -0.669 -12.999 -6.345 14.481 Atomic orbital electron populations 1.22324 0.87531 1.01666 1.00756 1.62210 1.07605 1.14513 1.42860 1.22161 0.94798 0.88760 1.01392 1.22155 0.94110 0.99329 0.91162 1.61968 1.07238 1.12738 1.43041 1.22353 0.86978 0.98061 0.99711 1.19335 0.86801 0.95266 0.89586 0.89810 1.45884 1.69210 1.08879 1.15336 1.18102 0.77908 0.79826 0.87610 1.90588 1.55617 1.43991 1.56205 1.20812 1.44423 0.92312 1.00446 0.91780 1.25660 0.93671 0.96054 0.97608 1.70011 1.35691 0.99420 1.34726 0.86521 0.80017 0.77543 0.83140 1.19402 1.20685 1.19422 1.20537 0.96852 0.96170 0.94129 1.21006 0.93628 0.99129 0.98947 1.21023 0.94734 1.00257 0.98334 1.21003 0.99197 0.99915 0.94932 1.21065 0.94103 1.00654 0.98601 1.20937 0.94198 0.99021 0.97460 1.22140 0.94280 0.89913 1.00557 1.22154 0.94718 0.97970 0.92305 0.91531 0.91673 0.95478 0.93311 0.90596 0.89668 0.94576 0.94134 0.90831 0.78810 0.92289 0.86534 0.86718 0.86877 0.86714 0.86299 0.94559 0.90418 0.93632 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.60 60.07 0.58 0.84 16 2 N -0.55 -6.86 4.97 -242.74 -1.21 -8.07 16 3 C 0.06 0.79 5.62 -3.76 -0.02 0.77 16 4 C 0.06 0.90 5.43 -3.77 -0.02 0.88 16 5 N -0.53 -7.76 4.38 -234.47 -1.03 -8.79 16 6 C 0.06 0.84 4.55 -3.83 -0.02 0.82 16 7 C 0.20 3.68 2.24 -69.09 -0.15 3.53 16 8 H 0.08 1.80 6.24 -51.93 -0.32 1.48 16 9 N -0.74 -16.04 4.03 -56.35 -0.23 -16.27 16 10 C 0.56 15.71 7.73 -12.99 -0.10 15.61 16 11 O -0.58 -18.58 14.63 5.20 0.08 -18.50 16 12 C -0.54 -15.37 9.54 -35.63 -0.34 -15.71 16 13 H 0.06 1.68 7.85 -52.49 -0.41 1.27 16 14 C 0.09 2.52 5.50 -17.37 -0.10 2.42 16 15 N -0.77 -23.31 11.83 55.55 0.66 -22.65 16 16 Si 0.90 20.50 29.56 -169.99 -5.02 15.48 16 17 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 20 C -0.07 -1.35 4.94 -104.62 -0.52 -1.86 16 21 C -0.11 -1.85 9.67 -39.58 -0.38 -2.23 16 22 C -0.13 -1.90 10.05 -39.59 -0.40 -2.30 16 23 C -0.13 -1.93 10.05 -39.59 -0.40 -2.33 16 24 C -0.13 -1.93 10.05 -39.58 -0.40 -2.33 16 25 C -0.10 -1.67 9.32 -39.58 -0.37 -2.04 16 26 C 0.06 0.73 5.56 -3.76 -0.02 0.71 16 27 C 0.06 0.68 5.62 -3.76 -0.02 0.66 16 28 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.58 8.13 -51.93 -0.42 0.16 16 30 H 0.03 0.29 8.14 -51.92 -0.42 -0.13 16 31 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.09 1.44 6.89 -51.93 -0.36 1.08 16 34 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.56 7.99 -51.93 -0.41 0.14 16 36 H 0.07 0.99 7.84 -51.93 -0.41 0.58 16 37 H 0.38 7.55 8.61 -40.82 -0.35 7.20 16 38 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 39 H 0.12 1.87 8.04 -52.49 -0.42 1.45 16 40 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 41 H 0.11 1.34 8.06 -52.48 -0.42 0.91 16 42 H 0.11 1.47 8.06 -52.49 -0.42 1.05 16 43 H 0.12 1.94 7.72 -52.49 -0.41 1.54 16 44 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.08 0.87 8.00 -51.93 -0.42 0.45 16 46 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 LS Contribution 381.08 15.07 5.74 5.74 Total: -1.00 -34.20 381.08 -11.40 -45.60 By element: Atomic # 1 Polarization: 17.72 SS G_CDS: -7.72 Total: 10.01 kcal Atomic # 6 Polarization: 0.13 SS G_CDS: -2.68 Total: -2.54 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -1.80 Total: -55.78 kcal Atomic # 8 Polarization: -18.58 SS G_CDS: 0.08 Total: -18.50 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.20 -11.40 -45.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548120928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.397 kcal (2) G-P(sol) polarization free energy of solvation -34.199 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.600 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds