Wall clock time and date at job start Tue Mar 31 2020 11:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46960 * 110.99901 * 2 1 4 4 C 1.53056 * 109.36221 * 183.19112 * 3 2 1 5 5 N 1.46949 * 109.36448 * 301.59364 * 4 3 2 6 6 C 1.46894 * 111.00270 * 183.19086 * 5 4 3 7 7 C 1.52996 * 109.47379 * 76.15111 * 6 5 4 8 8 H 1.09004 * 109.47394 * 295.88947 * 7 6 5 9 9 N 1.46500 * 109.47174 * 55.88615 * 7 6 5 10 10 C 1.34769 * 120.00446 * 208.14342 * 9 7 6 11 11 O 1.21683 * 119.99926 * 359.97438 * 10 9 7 12 12 C 1.46379 * 119.99981 * 179.97438 * 10 9 7 13 13 H 1.07990 * 120.00212 * 0.02562 * 12 10 9 14 14 C 1.40052 * 119.99817 * 180.02562 * 12 10 9 15 15 N 1.30671 * 120.00128 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 120.00042 * 180.02562 * 14 12 10 17 17 H 1.48491 * 109.47330 * 59.99265 * 16 14 12 18 18 H 1.48500 * 109.47078 * 179.97438 * 16 14 12 19 19 H 1.48504 * 109.46854 * 299.99749 * 16 14 12 20 20 C 1.50697 * 109.47359 * 175.88569 * 7 6 5 21 21 C 1.38243 * 119.99789 * 100.00459 * 20 7 6 22 22 C 1.38234 * 119.99547 * 179.97438 * 21 20 7 23 23 C 1.38226 * 120.00467 * 359.97188 * 22 21 20 24 24 C 1.38234 * 120.00127 * 0.02562 * 23 22 21 25 25 C 1.38233 * 120.00259 * 279.97770 * 20 7 6 26 26 C 1.46962 * 110.88105 * 59.32454 * 5 4 3 27 27 C 1.46959 * 111.00128 * 123.79551 * 2 1 3 28 28 H 1.08994 * 109.47344 * 59.99786 * 1 2 3 29 29 H 1.09000 * 109.46680 * 180.02562 * 1 2 3 30 30 H 1.09008 * 109.46778 * 299.99900 * 1 2 3 31 31 H 1.08997 * 109.48974 * 63.22498 * 3 2 1 32 32 H 1.09001 * 109.50689 * 303.16578 * 3 2 1 33 33 H 1.09000 * 109.48832 * 181.63156 * 4 3 2 34 34 H 1.08998 * 109.50386 * 61.57784 * 4 3 2 35 35 H 1.09006 * 109.46929 * 316.15032 * 6 5 4 36 36 H 1.09000 * 109.47582 * 196.15420 * 6 5 4 37 37 H 0.97009 * 119.99675 * 28.14132 * 9 7 6 38 38 H 0.96995 * 120.00295 * 179.97438 * 15 14 12 39 39 H 1.08000 * 120.00175 * 359.97438 * 21 20 7 40 40 H 1.08007 * 119.99556 * 180.02562 * 22 21 20 41 41 H 1.08004 * 120.00139 * 179.72405 * 23 22 21 42 42 H 1.07996 * 120.00341 * 179.97438 * 24 23 22 43 43 H 1.07999 * 120.00157 * 0.02562 * 25 20 7 44 44 H 1.08997 * 109.48732 * 60.64145 * 26 5 4 45 45 H 1.08996 * 109.49313 * 180.71353 * 26 5 4 46 46 H 1.08997 * 109.49096 * 296.77857 * 27 2 1 47 47 H 1.09001 * 109.48649 * 56.82471 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9957 1.3720 0.0000 4 6 3.5235 1.3291 -0.0804 5 7 4.0502 0.5660 1.0597 6 6 5.5191 0.5660 1.0597 7 6 6.0292 1.9219 1.5518 8 1 5.7273 2.7000 0.8506 9 7 5.4616 2.2073 2.8719 10 6 5.2757 3.4832 3.2640 11 8 5.5797 4.3982 2.5217 12 6 4.7081 3.7683 4.5828 13 1 4.4387 2.9562 5.2417 14 6 4.5144 5.0942 4.9901 15 7 4.8409 6.0768 4.1930 16 14 3.7908 5.4581 6.6733 17 1 4.6692 4.8846 7.7243 18 1 3.6892 6.9276 6.8613 19 1 2.4390 4.8512 6.7726 20 6 7.5327 1.8882 1.6480 21 6 8.3022 2.4446 0.6434 22 6 9.6814 2.4142 0.7320 23 6 10.2910 1.8280 1.8253 24 6 9.5216 1.2717 2.8299 25 6 8.1424 1.3015 2.7411 26 6 3.5236 -0.8060 1.0598 27 6 1.9957 -0.7631 1.1401 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 1.6938 1.8774 0.9174 32 1 1.6014 1.9132 -0.8601 33 1 3.9179 2.3448 -0.0513 34 1 3.8256 0.8482 -1.0107 35 1 5.8824 0.3866 0.0477 36 1 5.8825 -0.2207 1.7209 37 1 5.2196 1.4778 3.4638 38 1 4.7064 6.9951 4.4748 39 1 7.8259 2.9031 -0.2106 40 1 10.2826 2.8493 -0.0527 41 1 11.3686 1.8003 1.8923 42 1 9.9979 0.8133 3.6840 43 1 7.5412 0.8668 3.5260 44 1 3.8254 -1.3114 0.1424 45 1 3.9179 -1.3469 1.9200 46 1 1.6939 -0.2820 2.0704 47 1 1.6011 -1.7788 1.1113 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000548120928.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:20:50 Heat of formation + Delta-G solvation = -20.754880 kcal Electronic energy + Delta-G solvation = -27323.068646 eV Core-core repulsion = 23697.541678 eV Total energy + Delta-G solvation = -3625.526968 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.85171 -39.92670 -38.90292 -36.94121 -35.06083 -34.37671 -32.14275 -31.91827 -31.63059 -30.26925 -28.52200 -27.24800 -25.00870 -24.51998 -23.48746 -23.26771 -22.33634 -20.93844 -20.67111 -19.16686 -17.85904 -17.41970 -17.17528 -16.68471 -16.15567 -16.05617 -16.01632 -15.84232 -15.70690 -15.32907 -15.06474 -14.90806 -14.52107 -14.19282 -14.17507 -13.83089 -13.64219 -13.44177 -13.31858 -13.05868 -12.84678 -12.74396 -12.71871 -12.52077 -12.27419 -12.23190 -12.07745 -12.00477 -11.87073 -11.67298 -11.56696 -10.88367 -9.80348 -9.74836 -9.58720 -9.42010 -9.28019 -9.18961 -8.22505 -6.76953 0.51978 0.57496 1.38383 1.42171 1.52678 2.25915 2.55367 2.78435 2.94889 2.99531 3.26223 3.71420 3.87763 3.92074 4.04791 4.09282 4.14865 4.18924 4.22984 4.32098 4.36156 4.39316 4.45452 4.52061 4.59968 4.62645 4.67358 4.73033 4.76607 4.82096 4.87546 4.95884 4.97812 4.98893 5.07617 5.17075 5.23392 5.36090 5.63130 5.65506 5.77597 5.93293 5.93325 5.98437 6.13756 6.19777 6.20573 6.33274 6.46407 6.93585 7.70269 8.59917 8.78605 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.007385 B = 0.005810 C = 0.003627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3790.599960 B = 4817.718354 C = 7718.985908 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.063 3.937 4 C 0.066 3.934 5 N -0.545 5.545 6 C 0.072 3.928 7 C 0.204 3.796 8 H 0.044 0.956 9 N -0.723 5.723 10 C 0.550 3.450 11 O -0.632 6.632 12 C -0.572 4.572 13 H 0.080 0.920 14 C 0.031 3.969 15 N -0.823 5.823 16 Si 0.990 3.010 17 H -0.255 1.255 18 H -0.276 1.276 19 H -0.257 1.257 20 C -0.098 4.098 21 C -0.132 4.132 22 C -0.127 4.127 23 C -0.130 4.130 24 C -0.128 4.128 25 C -0.115 4.115 26 C 0.061 3.939 27 C 0.057 3.943 28 H 0.074 0.926 29 H 0.086 0.914 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.086 0.914 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.092 0.908 37 H 0.391 0.609 38 H 0.271 0.729 39 H 0.112 0.888 40 H 0.141 0.859 41 H 0.148 0.852 42 H 0.143 0.857 43 H 0.120 0.880 44 H 0.045 0.955 45 H 0.093 0.907 46 H 0.027 0.973 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.029 -16.204 -5.903 17.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.273 5.273 3 C -0.065 4.065 4 C -0.063 4.063 5 N -0.270 5.270 6 C -0.057 4.057 7 C 0.097 3.903 8 H 0.062 0.938 9 N -0.375 5.375 10 C 0.354 3.646 11 O -0.519 6.519 12 C -0.608 4.608 13 H 0.099 0.901 14 C -0.183 4.183 15 N -0.453 5.453 16 Si 0.810 3.190 17 H -0.179 1.179 18 H -0.201 1.201 19 H -0.181 1.181 20 C -0.100 4.100 21 C -0.151 4.151 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.146 4.146 25 C -0.133 4.133 26 C -0.066 4.066 27 C -0.071 4.071 28 H 0.093 0.907 29 H 0.104 0.896 30 H 0.037 0.963 31 H 0.036 0.964 32 H 0.104 0.896 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.111 0.889 37 H 0.224 0.776 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.159 0.841 41 H 0.166 0.834 42 H 0.161 0.839 43 H 0.138 0.862 44 H 0.063 0.937 45 H 0.111 0.889 46 H 0.045 0.955 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 0.170 -15.386 -6.493 16.700 hybrid contribution -0.508 0.643 0.809 1.151 sum -0.339 -14.742 -5.684 15.804 Atomic orbital electron populations 1.22406 0.86073 1.03037 1.00768 1.62266 1.08951 1.13065 1.42997 1.22048 0.94296 0.89891 1.00293 1.22017 0.94640 0.97755 0.91860 1.61926 1.07250 1.14595 1.43198 1.22190 0.87103 0.95866 1.00495 1.19350 0.87807 0.96293 0.86876 0.93790 1.45463 1.68176 1.07233 1.16624 1.18375 0.77588 0.81063 0.87590 1.90543 1.57723 1.46095 1.57529 1.21340 1.44909 0.93492 1.01107 0.90144 1.26860 0.93492 0.95477 1.02492 1.70193 1.37361 1.00116 1.37633 0.85197 0.79471 0.77601 0.76778 1.17901 1.20052 1.18107 1.20506 0.96165 0.97879 0.95452 1.21176 0.94960 0.99843 0.99094 1.21373 0.93987 0.99750 0.99405 1.21447 1.01014 0.98386 0.93961 1.21438 0.93382 1.00131 0.99651 1.21067 0.95441 0.99674 0.97123 1.22221 0.94447 0.88310 1.01670 1.22224 0.94619 0.99042 0.91209 0.90702 0.89582 0.96329 0.96418 0.89556 0.93032 0.93424 0.92959 0.88949 0.77600 0.91949 0.86971 0.84099 0.83405 0.83942 0.86174 0.93658 0.88852 0.95511 0.88014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 9.60 127.69 1.23 1.71 16 2 N -0.55 -13.22 4.97 -921.89 -4.58 -17.80 16 3 C 0.06 1.82 5.62 86.31 0.49 2.31 16 4 C 0.07 2.03 5.43 86.31 0.47 2.50 16 5 N -0.54 -16.23 4.38 -895.73 -3.92 -20.16 16 6 C 0.07 2.11 4.55 86.30 0.39 2.51 16 7 C 0.20 7.97 2.24 44.24 0.10 8.07 16 8 H 0.04 2.07 6.24 -2.39 -0.01 2.06 16 9 N -0.72 -32.62 4.03 -450.41 -1.81 -34.43 16 10 C 0.55 32.23 7.73 86.36 0.67 32.90 16 11 O -0.63 -42.89 14.63 -4.29 -0.06 -42.95 16 12 C -0.57 -33.12 9.54 24.83 0.24 -32.88 16 13 H 0.08 4.23 7.85 -2.92 -0.02 4.20 16 14 C 0.03 1.80 5.50 85.31 0.47 2.26 16 15 N -0.82 -51.72 11.83 21.84 0.26 -51.46 16 16 Si 0.99 42.32 29.56 68.60 2.03 44.35 16 17 H -0.25 -10.25 7.11 99.48 0.71 -9.54 16 18 H -0.28 -11.40 7.11 99.48 0.71 -10.69 16 19 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 20 C -0.10 -3.63 4.94 -19.87 -0.10 -3.73 16 21 C -0.13 -4.63 9.67 22.27 0.22 -4.41 16 22 C -0.13 -3.72 10.05 22.27 0.22 -3.49 16 23 C -0.13 -3.47 10.05 22.27 0.22 -3.25 16 24 C -0.13 -3.66 10.05 22.27 0.22 -3.44 16 25 C -0.11 -3.87 9.32 22.27 0.21 -3.66 16 26 C 0.06 1.40 5.56 86.31 0.48 1.88 16 27 C 0.06 1.29 5.62 86.31 0.49 1.77 16 28 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.33 8.13 -2.39 -0.02 1.31 16 30 H 0.02 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.02 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.05 1.92 6.89 -2.39 -0.02 1.90 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.05 1.43 7.99 -2.38 -0.02 1.41 16 36 H 0.09 2.38 7.84 -2.39 -0.02 2.36 16 37 H 0.39 15.81 8.61 -92.70 -0.80 15.01 16 38 H 0.27 15.54 8.29 -92.71 -0.77 14.78 16 39 H 0.11 3.86 8.04 -2.91 -0.02 3.84 16 40 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 41 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 42 H 0.14 3.21 8.06 -2.91 -0.02 3.18 16 43 H 0.12 3.88 7.72 -2.91 -0.02 3.86 16 44 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.09 1.86 8.00 -2.39 -0.02 1.84 16 46 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.10 1.75 8.13 -2.39 -0.02 1.73 16 Total: -1.00 -78.33 381.08 -1.94 -80.27 By element: Atomic # 1 Polarization: 40.99 SS G_CDS: 0.15 Total: 41.14 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: 6.01 Total: 1.05 kcal Atomic # 7 Polarization: -113.79 SS G_CDS: -10.06 Total: -123.85 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -0.06 Total: -42.95 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.35 kcal Total: -78.33 -1.94 -80.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000548120928.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.513 kcal (2) G-P(sol) polarization free energy of solvation -78.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds