Wall clock time and date at job start Tue Mar 31 2020 11:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00220 * 2 1 4 4 C 1.38450 * 110.99700 * 123.95256 * 2 1 3 5 5 C 1.39498 * 120.95319 * 299.97185 * 4 2 1 6 6 C 1.37780 * 119.21345 * 180.02562 * 5 4 2 7 7 N 1.32179 * 121.21740 * 0.02562 * 6 5 4 8 8 C 1.31636 * 122.11970 * 359.97438 * 7 6 5 9 9 C 1.39523 * 120.62820 * 0.02562 * 8 7 6 10 10 C 1.47450 * 120.63574 * 180.02562 * 9 8 7 11 11 O 1.21607 * 119.99996 * 126.84191 * 10 9 8 12 12 N 1.34780 * 120.00283 * 306.84543 * 10 9 8 13 13 C 1.46924 * 120.62614 * 3.61779 * 12 10 9 14 14 C 1.52763 * 109.00801 * 233.58610 * 13 12 10 15 15 C 1.53034 * 109.38335 * 305.58835 * 14 13 12 16 16 C 1.53000 * 109.45908 * 181.25897 * 15 14 13 17 17 C 1.50700 * 109.46985 * 64.93495 * 16 15 14 18 18 H 1.08005 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99972 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46877 * 120.00111 * 21 19 17 24 24 H 1.48498 * 109.47456 * 240.00287 * 21 19 17 25 25 C 1.53043 * 109.53668 * 61.24198 * 15 14 13 26 26 C 1.46919 * 120.63124 * 183.90692 * 12 10 9 27 27 H 1.09000 * 109.47084 * 296.05097 * 1 2 3 28 28 H 1.09006 * 109.46361 * 56.05084 * 1 2 3 29 29 H 1.08994 * 109.46855 * 176.04501 * 1 2 3 30 30 H 1.09000 * 109.46917 * 183.95450 * 3 2 1 31 31 H 1.08995 * 109.46450 * 303.94933 * 3 2 1 32 32 H 1.08993 * 109.47021 * 63.95054 * 3 2 1 33 33 H 1.07996 * 120.39792 * 0.04750 * 5 4 2 34 34 H 1.07995 * 119.39051 * 180.28482 * 6 5 4 35 35 H 1.08000 * 119.68326 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.58952 * 353.42442 * 13 12 10 37 37 H 1.09002 * 109.58278 * 113.85045 * 13 12 10 38 38 H 1.09008 * 109.56019 * 185.55766 * 14 13 12 39 39 H 1.08991 * 109.36033 * 65.50601 * 14 13 12 40 40 H 1.08995 * 109.46435 * 301.22399 * 15 14 13 41 41 H 1.09007 * 109.47071 * 184.93071 * 16 15 14 42 42 H 1.08991 * 109.47515 * 304.93417 * 16 15 14 43 43 H 0.97004 * 119.99801 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49985 * 178.67635 * 25 15 14 45 45 H 1.09009 * 109.52226 * 58.60146 * 25 15 14 46 46 H 1.09005 * 109.58509 * 246.15420 * 26 12 10 47 47 H 1.09002 * 109.59289 * 6.42879 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9651 -0.7219 1.0722 5 6 1.6642 -0.3560 2.3843 6 6 2.1776 -1.0996 3.4243 7 7 2.9482 -2.1500 3.2005 8 6 3.2639 -2.5397 1.9834 9 6 2.7892 -1.8466 0.8695 10 6 3.1423 -2.2834 -0.4939 11 8 2.2671 -2.4835 -1.3140 12 7 4.4351 -2.4609 -0.8311 13 6 5.4986 -2.3000 0.1698 14 6 6.5312 -1.3050 -0.3569 15 6 7.0248 -1.7647 -1.7306 16 6 8.0821 -0.7863 -2.2460 17 6 9.2920 -0.8358 -1.3488 18 1 9.3056 -1.4991 -0.4966 19 6 10.3820 -0.0350 -1.6166 20 7 10.3657 0.7723 -2.6547 21 14 11.8814 -0.0958 -0.5042 22 1 11.6498 -1.0776 0.5857 23 1 13.0687 -0.5067 -1.2958 24 1 12.1180 1.2480 0.0817 25 6 5.8489 -1.8067 -2.7092 26 6 4.8081 -2.8127 -2.2079 27 1 -0.3633 0.4513 0.9233 28 1 -0.3632 0.5740 -0.8526 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9162 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 1.0360 0.4998 2.5825 34 1 1.9428 -0.8217 4.4411 35 1 3.8964 -3.4043 1.8459 36 1 5.0717 -1.9237 1.0994 37 1 5.9800 -3.2613 0.3492 38 1 7.3732 -1.2530 0.3335 39 1 6.0719 -0.3207 -0.4460 40 1 7.4618 -2.7596 -1.6453 41 1 8.3702 -1.0636 -3.2601 42 1 7.6724 0.2237 -2.2479 43 1 11.1324 1.3360 -2.8428 44 1 6.2052 -2.1115 -3.6933 45 1 5.3957 -0.8175 -2.7768 46 1 5.2320 -3.8168 -2.2264 47 1 3.9253 -2.7771 -2.8462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563187425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:44 Heat of formation + Delta-G solvation = 7.384075 kcal Electronic energy + Delta-G solvation = -27397.262290 eV Core-core repulsion = 23772.955518 eV Total energy + Delta-G solvation = -3624.306771 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.15992 -39.41569 -37.67760 -37.15565 -34.02207 -32.52443 -31.70256 -31.34659 -30.46565 -28.06046 -27.88243 -25.63987 -25.15248 -23.93099 -22.93970 -21.90898 -21.62034 -20.02707 -18.89542 -17.52913 -17.34757 -16.88091 -16.31322 -15.90121 -15.35655 -14.94189 -14.80192 -14.65116 -14.52787 -14.23121 -13.84070 -13.78454 -13.57481 -13.20027 -12.88767 -12.72168 -12.64468 -12.52222 -12.25984 -12.16199 -11.96510 -11.79207 -11.19849 -10.98494 -10.80002 -10.70956 -10.47795 -10.21383 -10.10968 -9.81710 -9.69649 -9.58094 -9.33248 -9.18490 -8.95674 -8.80590 -8.37120 -8.31327 -6.01013 -4.02917 0.59982 0.81627 2.77157 3.11756 3.29227 3.37415 3.40312 3.42727 3.52078 4.10494 4.43453 4.44386 4.56729 4.66706 4.81352 4.97995 5.06063 5.12518 5.20299 5.24278 5.31490 5.34225 5.36242 5.44102 5.48878 5.54298 5.62128 5.65539 5.70157 5.76946 5.82665 6.00858 6.08761 6.20273 6.38335 6.40075 6.52345 6.53077 6.69541 6.93214 6.96588 6.99357 7.10728 7.56287 7.62939 7.66423 7.80839 7.98911 8.31322 8.41318 9.03871 9.61083 11.10238 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003470 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.385390 B = 8066.606264 C = 8447.910458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.508 5.508 3 C 0.028 3.972 4 C 0.183 3.817 5 C -0.211 4.211 6 C 0.121 3.879 7 N -0.487 5.487 8 C 0.138 3.862 9 C -0.154 4.154 10 C 0.573 3.427 11 O -0.525 6.525 12 N -0.600 5.600 13 C 0.097 3.903 14 C -0.117 4.117 15 C -0.080 4.080 16 C 0.028 3.972 17 C -0.515 4.515 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.129 4.129 26 C 0.115 3.885 27 H 0.030 0.970 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.033 0.967 33 H 0.137 0.863 34 H 0.159 0.841 35 H 0.165 0.835 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.084 0.916 39 H 0.056 0.944 40 H 0.059 0.941 41 H 0.016 0.984 42 H 0.015 0.985 43 H 0.259 0.741 44 H 0.071 0.929 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.886 -2.483 9.134 21.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.228 5.228 3 C -0.118 4.118 4 C 0.079 3.921 5 C -0.233 4.233 6 C -0.035 4.035 7 N -0.196 5.196 8 C -0.021 4.021 9 C -0.161 4.161 10 C 0.359 3.641 11 O -0.402 6.402 12 N -0.333 5.333 13 C -0.025 4.025 14 C -0.155 4.155 15 C -0.099 4.099 16 C -0.009 4.009 17 C -0.554 4.554 18 H 0.075 0.925 19 C -0.144 4.144 20 N -0.535 5.535 21 Si 0.716 3.284 22 H -0.197 1.197 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.167 4.167 26 C -0.006 4.006 27 H 0.049 0.951 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.051 0.949 33 H 0.155 0.845 34 H 0.176 0.824 35 H 0.182 0.818 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.103 0.897 39 H 0.075 0.925 40 H 0.077 0.923 41 H 0.034 0.966 42 H 0.033 0.967 43 H 0.069 0.931 44 H 0.089 0.911 45 H 0.079 0.921 46 H 0.083 0.917 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.788 -3.137 8.850 21.004 hybrid contribution 0.451 1.110 0.601 1.341 sum -18.337 -2.027 9.451 20.728 Atomic orbital electron populations 1.22425 0.84673 1.03221 1.00858 1.59091 1.09212 1.14452 1.40063 1.22507 1.01624 0.86486 1.01198 1.18948 0.91911 0.92011 0.89215 1.22650 1.04026 1.02914 0.93701 1.22715 0.91458 0.89819 0.99471 1.67715 1.13243 1.14856 1.23770 1.23050 0.94768 0.97908 0.86360 1.21040 1.01284 0.98004 0.95724 1.17705 0.82522 0.77362 0.86488 1.90756 1.47779 1.50809 1.50806 1.48066 1.05291 1.68547 1.11390 1.22043 0.88920 1.00613 0.90966 1.21804 0.97437 0.97440 0.98860 1.21188 0.94955 1.00755 0.92979 1.19124 0.92018 0.93564 0.96235 1.21279 1.00024 1.22529 1.11541 0.92538 1.25018 0.98582 0.95551 0.95290 1.69975 1.30549 1.25387 1.27558 0.86607 0.83198 0.77782 0.80837 1.19720 1.21085 1.21124 1.22022 0.96085 0.98879 0.99701 1.21666 0.99136 0.98208 0.81621 0.95112 0.90366 0.90758 0.90701 0.90183 0.94854 0.84519 0.82371 0.81763 0.90573 0.91179 0.89706 0.92490 0.92278 0.96576 0.96694 0.93121 0.91086 0.92090 0.91715 0.89583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.34 60.06 0.56 0.89 16 2 N -0.51 -6.14 4.19 -186.41 -0.78 -6.92 16 3 C 0.03 0.29 9.38 60.07 0.56 0.85 16 4 C 0.18 2.24 4.72 -83.40 -0.39 1.84 16 5 C -0.21 -2.03 8.65 -39.28 -0.34 -2.37 16 6 C 0.12 1.16 11.15 -17.57 -0.20 0.97 16 7 N -0.49 -5.70 10.34 -13.01 -0.13 -5.83 16 8 C 0.14 1.65 8.60 -17.16 -0.15 1.51 16 9 C -0.15 -2.08 4.93 -104.66 -0.52 -2.60 16 10 C 0.57 8.96 6.90 -12.51 -0.09 8.87 16 11 O -0.53 -9.65 16.16 5.27 0.09 -9.57 16 12 N -0.60 -8.94 2.98 -174.29 -0.52 -9.46 16 13 C 0.10 1.36 5.47 -3.93 -0.02 1.33 16 14 C -0.12 -2.03 5.17 -26.84 -0.14 -2.17 16 15 C -0.08 -1.53 2.10 -90.58 -0.19 -1.72 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.56 16 17 C -0.52 -13.86 8.39 -34.44 -0.29 -14.15 16 18 H 0.06 1.47 7.06 -52.48 -0.37 1.09 16 19 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 21 Si 0.89 21.16 29.54 -169.99 -5.02 16.14 16 22 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 23 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 C -0.13 -2.16 5.36 -26.61 -0.14 -2.30 16 26 C 0.12 1.73 6.42 -3.72 -0.02 1.70 16 27 H 0.03 0.23 7.19 -51.93 -0.37 -0.14 16 28 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.08 0.72 8.12 -51.93 -0.42 0.30 16 32 H 0.03 0.28 7.40 -51.93 -0.38 -0.11 16 33 H 0.14 0.99 7.16 -52.49 -0.38 0.62 16 34 H 0.16 1.02 8.06 -52.49 -0.42 0.59 16 35 H 0.17 1.70 7.30 -52.49 -0.38 1.32 16 36 H 0.08 0.98 4.71 -51.93 -0.24 0.74 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 38 H 0.08 1.56 6.91 -51.92 -0.36 1.20 16 39 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 44 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.06 1.09 8.14 -51.92 -0.42 0.66 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.09 1.33 7.02 -51.93 -0.36 0.96 16 LS Contribution 373.10 15.07 5.62 5.62 Total: -1.00 -32.45 373.10 -9.08 -41.52 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.48 Total: -0.51 kcal Atomic # 6 Polarization: -3.72 SS G_CDS: -1.58 Total: -5.30 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: -0.70 Total: -47.91 kcal Atomic # 8 Polarization: -9.65 SS G_CDS: 0.09 Total: -9.57 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.14 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.45 -9.08 -41.52 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.908 kcal (2) G-P(sol) polarization free energy of solvation -32.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds