Wall clock time and date at job start Tue Mar 31 2020 11:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46904 * 111.00220 * 2 1 4 4 C 1.38450 * 110.99700 * 123.95256 * 2 1 3 5 5 C 1.39498 * 120.95319 * 299.97185 * 4 2 1 6 6 C 1.37780 * 119.21345 * 180.02562 * 5 4 2 7 7 N 1.32179 * 121.21740 * 0.02562 * 6 5 4 8 8 C 1.31636 * 122.11970 * 359.97438 * 7 6 5 9 9 C 1.39523 * 120.62820 * 0.02562 * 8 7 6 10 10 C 1.47450 * 120.63574 * 180.02562 * 9 8 7 11 11 O 1.21607 * 119.99996 * 126.84191 * 10 9 8 12 12 N 1.34780 * 120.00283 * 306.84543 * 10 9 8 13 13 C 1.46924 * 120.62614 * 3.61779 * 12 10 9 14 14 C 1.52763 * 109.00801 * 233.58610 * 13 12 10 15 15 C 1.53034 * 109.38335 * 305.58835 * 14 13 12 16 16 C 1.53000 * 109.45908 * 181.25897 * 15 14 13 17 17 C 1.50700 * 109.46985 * 64.93495 * 16 15 14 18 18 H 1.08005 * 119.99833 * 0.02562 * 17 16 15 19 19 C 1.37878 * 119.99972 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00150 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99948 * 179.97438 * 19 17 16 22 22 H 1.48508 * 109.47239 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.46877 * 120.00111 * 21 19 17 24 24 H 1.48498 * 109.47456 * 240.00287 * 21 19 17 25 25 C 1.53043 * 109.53668 * 61.24198 * 15 14 13 26 26 C 1.46919 * 120.63124 * 183.90692 * 12 10 9 27 27 H 1.09000 * 109.47084 * 296.05097 * 1 2 3 28 28 H 1.09006 * 109.46361 * 56.05084 * 1 2 3 29 29 H 1.08994 * 109.46855 * 176.04501 * 1 2 3 30 30 H 1.09000 * 109.46917 * 183.95450 * 3 2 1 31 31 H 1.08995 * 109.46450 * 303.94933 * 3 2 1 32 32 H 1.08993 * 109.47021 * 63.95054 * 3 2 1 33 33 H 1.07996 * 120.39792 * 0.04750 * 5 4 2 34 34 H 1.07995 * 119.39051 * 180.28482 * 6 5 4 35 35 H 1.08000 * 119.68326 * 180.02562 * 8 7 6 36 36 H 1.08997 * 109.58952 * 353.42442 * 13 12 10 37 37 H 1.09002 * 109.58278 * 113.85045 * 13 12 10 38 38 H 1.09008 * 109.56019 * 185.55766 * 14 13 12 39 39 H 1.08991 * 109.36033 * 65.50601 * 14 13 12 40 40 H 1.08995 * 109.46435 * 301.22399 * 15 14 13 41 41 H 1.09007 * 109.47071 * 184.93071 * 16 15 14 42 42 H 1.08991 * 109.47515 * 304.93417 * 16 15 14 43 43 H 0.97004 * 119.99801 * 179.97438 * 20 19 17 44 44 H 1.09002 * 109.49985 * 178.67635 * 25 15 14 45 45 H 1.09009 * 109.52226 * 58.60146 * 25 15 14 46 46 H 1.09005 * 109.58509 * 246.15420 * 26 12 10 47 47 H 1.09002 * 109.59289 * 6.42879 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9651 -0.7219 1.0722 5 6 1.6642 -0.3560 2.3843 6 6 2.1776 -1.0996 3.4243 7 7 2.9482 -2.1500 3.2005 8 6 3.2639 -2.5397 1.9834 9 6 2.7892 -1.8466 0.8695 10 6 3.1423 -2.2834 -0.4939 11 8 2.2671 -2.4835 -1.3140 12 7 4.4351 -2.4609 -0.8311 13 6 5.4986 -2.3000 0.1698 14 6 6.5312 -1.3050 -0.3569 15 6 7.0248 -1.7647 -1.7306 16 6 8.0821 -0.7863 -2.2460 17 6 9.2920 -0.8358 -1.3488 18 1 9.3056 -1.4991 -0.4966 19 6 10.3820 -0.0350 -1.6166 20 7 10.3657 0.7723 -2.6547 21 14 11.8814 -0.0958 -0.5042 22 1 11.6498 -1.0776 0.5857 23 1 13.0687 -0.5067 -1.2958 24 1 12.1180 1.2480 0.0817 25 6 5.8489 -1.8067 -2.7092 26 6 4.8081 -2.8127 -2.2079 27 1 -0.3633 0.4513 0.9233 28 1 -0.3632 0.5740 -0.8526 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9162 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 1.0360 0.4998 2.5825 34 1 1.9428 -0.8217 4.4411 35 1 3.8964 -3.4043 1.8459 36 1 5.0717 -1.9237 1.0994 37 1 5.9800 -3.2613 0.3492 38 1 7.3732 -1.2530 0.3335 39 1 6.0719 -0.3207 -0.4460 40 1 7.4618 -2.7596 -1.6453 41 1 8.3702 -1.0636 -3.2601 42 1 7.6724 0.2237 -2.2479 43 1 11.1324 1.3360 -2.8428 44 1 6.2052 -2.1115 -3.6933 45 1 5.3957 -0.8175 -2.7768 46 1 5.2320 -3.8168 -2.2264 47 1 3.9253 -2.7771 -2.8462 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563187425.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:36:43 Heat of formation + Delta-G solvation = -12.727230 kcal Electronic energy + Delta-G solvation = -27398.134381 eV Core-core repulsion = 23772.955518 eV Total energy + Delta-G solvation = -3625.178863 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.09899 -40.55638 -38.66425 -38.37840 -35.68989 -34.14146 -32.99897 -32.15519 -31.66191 -29.80773 -28.64111 -26.82172 -26.24079 -25.23428 -24.23359 -23.30951 -22.62505 -21.42027 -20.19272 -18.60563 -18.38631 -18.19754 -17.80647 -17.07653 -16.52630 -16.26534 -15.94228 -15.66824 -15.58666 -15.30468 -15.06445 -14.90998 -14.68604 -14.53187 -14.39237 -14.09541 -13.90065 -13.39604 -13.33191 -13.30716 -13.02438 -12.99424 -12.77084 -12.72047 -12.52759 -12.30494 -12.13920 -11.74313 -11.40789 -11.27860 -11.04691 -10.84378 -10.65386 -10.52406 -10.51594 -10.14658 -9.61352 -9.58238 -8.15340 -6.24667 -0.25842 -0.00253 1.41556 1.42787 1.54867 1.62206 2.01575 2.43693 2.63610 2.65285 3.18681 3.28299 3.51013 3.80286 3.87260 3.90897 3.97820 4.06325 4.10502 4.19395 4.26436 4.31933 4.39801 4.45689 4.49776 4.51497 4.57154 4.60291 4.67399 4.80380 4.85282 4.89377 4.89588 4.96516 5.02352 5.10761 5.31893 5.32854 5.38709 5.43042 5.54723 5.59988 5.77435 5.82264 5.90631 6.12080 6.29896 6.39126 6.81265 6.92367 7.12841 7.44223 8.96854 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015505 B = 0.003470 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.385390 B = 8066.606264 C = 8447.910458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.536 5.536 3 C 0.031 3.969 4 C 0.172 3.828 5 C -0.203 4.203 6 C 0.126 3.874 7 N -0.502 5.502 8 C 0.138 3.862 9 C -0.182 4.182 10 C 0.574 3.426 11 O -0.560 6.560 12 N -0.601 5.601 13 C 0.108 3.892 14 C -0.110 4.110 15 C -0.072 4.072 16 C 0.033 3.967 17 C -0.525 4.525 18 H 0.068 0.932 19 C -0.003 4.003 20 N -0.937 5.937 21 Si 0.959 3.041 22 H -0.257 1.257 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.120 4.120 26 C 0.122 3.878 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.056 0.944 33 H 0.165 0.835 34 H 0.194 0.806 35 H 0.176 0.824 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.075 0.925 39 H 0.038 0.962 40 H 0.067 0.933 41 H -0.013 1.013 42 H -0.017 1.017 43 H 0.260 0.740 44 H 0.074 0.926 45 H 0.042 0.958 46 H 0.086 0.914 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.548 -3.064 11.945 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.257 5.257 3 C -0.114 4.114 4 C 0.068 3.932 5 C -0.225 4.225 6 C -0.029 4.029 7 N -0.211 5.211 8 C -0.021 4.021 9 C -0.188 4.188 10 C 0.362 3.638 11 O -0.439 6.439 12 N -0.334 5.334 13 C -0.014 4.014 14 C -0.149 4.149 15 C -0.090 4.090 16 C -0.004 4.004 17 C -0.563 4.563 18 H 0.086 0.914 19 C -0.200 4.200 20 N -0.579 5.579 21 Si 0.784 3.216 22 H -0.180 1.180 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.158 4.158 26 C 0.000 4.000 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.105 0.895 32 H 0.074 0.926 33 H 0.183 0.817 34 H 0.211 0.789 35 H 0.193 0.807 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.057 0.943 40 H 0.085 0.915 41 H 0.005 0.995 42 H 0.001 0.999 43 H 0.069 0.931 44 H 0.092 0.908 45 H 0.061 0.939 46 H 0.105 0.895 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.452 -3.729 11.677 22.992 hybrid contribution 0.610 1.359 -0.293 1.518 sum -18.842 -2.370 11.384 22.141 Atomic orbital electron populations 1.22425 0.83381 1.02602 1.02454 1.59042 1.10570 1.15256 1.40861 1.22475 1.00144 0.86117 1.02713 1.19190 0.91732 0.91840 0.90424 1.22889 1.03731 1.03482 0.92366 1.23337 0.89862 0.88615 1.01102 1.67794 1.14116 1.15881 1.23325 1.23183 0.94749 0.98014 0.86104 1.21004 1.03391 0.99679 0.94734 1.18059 0.82121 0.76377 0.87210 1.90726 1.48639 1.52312 1.52202 1.48126 1.05533 1.68294 1.11400 1.22006 0.87746 1.00688 0.90943 1.21672 0.98003 0.97662 0.97516 1.21031 0.94221 0.99325 0.94442 1.19014 0.93303 0.93280 0.94808 1.21702 1.00551 1.22218 1.11809 0.91425 1.25948 1.02024 0.95238 0.96761 1.70122 1.31622 1.26514 1.29600 0.85491 0.79001 0.78054 0.79080 1.18038 1.20877 1.20900 1.21897 0.95709 0.98740 0.99484 1.21581 0.98174 0.98412 0.81824 0.92705 0.89624 0.92347 0.92997 0.89472 0.92594 0.81736 0.78890 0.80671 0.89052 0.88809 0.90603 0.94267 0.91474 0.99455 0.99907 0.93096 0.90762 0.93880 0.89544 0.90075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.66 9.34 127.69 1.19 1.85 16 2 N -0.54 -12.52 4.19 -743.68 -3.12 -15.64 16 3 C 0.03 0.61 9.38 127.69 1.20 1.81 16 4 C 0.17 3.96 4.72 39.05 0.18 4.15 16 5 C -0.20 -3.31 8.65 22.47 0.19 -3.11 16 6 C 0.13 2.00 11.15 84.53 0.94 2.94 16 7 N -0.50 -10.45 10.34 -195.07 -2.02 -12.47 16 8 C 0.14 3.06 8.60 85.03 0.73 3.79 16 9 C -0.18 -4.73 4.93 -19.89 -0.10 -4.82 16 10 C 0.57 17.81 6.90 86.67 0.60 18.41 16 11 O -0.56 -20.82 16.16 -4.05 -0.07 -20.88 16 12 N -0.60 -17.49 2.98 -823.60 -2.45 -19.94 16 13 C 0.11 2.86 5.47 86.22 0.47 3.33 16 14 C -0.11 -3.80 5.17 30.53 0.16 -3.64 16 15 C -0.07 -2.76 2.10 -10.77 -0.02 -2.78 16 16 C 0.03 1.69 4.45 29.85 0.13 1.82 16 17 C -0.52 -28.51 8.39 25.60 0.21 -28.30 16 18 H 0.07 3.45 7.06 -2.91 -0.02 3.43 16 19 C 0.00 -0.15 5.46 84.65 0.46 0.31 16 20 N -0.94 -56.84 13.29 21.45 0.28 -56.55 16 21 Si 0.96 43.40 29.54 68.60 2.03 45.42 16 22 H -0.26 -10.87 7.11 99.48 0.71 -10.16 16 23 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 24 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 25 C -0.12 -4.10 5.36 30.67 0.16 -3.94 16 26 C 0.12 3.58 6.42 86.36 0.55 4.14 16 27 H 0.05 0.69 7.19 -2.39 -0.02 0.67 16 28 H 0.09 1.35 8.12 -2.38 -0.02 1.33 16 29 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.09 1.52 8.12 -2.39 -0.02 1.50 16 32 H 0.06 0.81 7.40 -2.39 -0.02 0.79 16 33 H 0.17 1.70 7.16 -2.91 -0.02 1.68 16 34 H 0.19 1.60 8.06 -2.91 -0.02 1.57 16 35 H 0.18 3.28 7.30 -2.91 -0.02 3.26 16 36 H 0.09 2.20 4.71 -2.39 -0.01 2.18 16 37 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.08 2.75 6.91 -2.38 -0.02 2.73 16 39 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 41 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 42 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 43 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 44 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 45 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.09 2.20 8.14 -2.38 -0.02 2.18 16 47 H 0.08 2.51 7.02 -2.39 -0.02 2.49 16 Total: -1.00 -72.24 373.10 2.69 -69.55 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.95 Total: 14.55 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: 7.08 Total: -4.04 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -7.30 Total: -104.60 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: -0.07 Total: -20.88 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.42 kcal Total: -72.24 2.69 -69.55 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563187425.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.819 kcal (2) G-P(sol) polarization free energy of solvation -72.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds