Wall clock time and date at job start Tue Mar 31 2020 11:21:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00202 * 2 1 4 4 C 1.53230 * 109.33967 * 187.25025 * 3 2 1 5 5 N 1.47082 * 108.52401 * 306.16637 * 4 3 2 6 6 C 1.34773 * 120.88273 * 231.19176 * 5 4 3 7 7 O 1.21558 * 120.00166 * 5.78793 * 6 5 4 8 8 C 1.47847 * 120.00065 * 185.79235 * 6 5 4 9 9 C 1.39569 * 120.14484 * 219.69567 * 8 6 5 10 10 C 1.37958 * 119.85550 * 179.97438 * 9 8 6 11 11 C 1.38360 * 120.14337 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.85389 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.46896 * 90.00034 * 12 11 10 14 14 C 1.46903 * 111.00057 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47065 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00311 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99753 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47306 * 59.99832 * 19 17 15 21 21 H 1.48502 * 109.47454 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47200 * 299.99821 * 19 17 15 23 23 C 1.38359 * 120.29101 * 0.27789 * 11 10 9 24 24 C 1.37957 * 120.14434 * 359.48498 * 23 11 10 25 25 C 1.47075 * 118.23322 * 51.45956 * 5 4 3 26 26 C 1.46904 * 110.99619 * 124.29905 * 2 1 3 27 27 H 1.09001 * 109.46966 * 60.00110 * 1 2 3 28 28 H 1.09004 * 109.47482 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47700 * 300.00364 * 1 2 3 30 30 H 1.08998 * 109.49069 * 67.28667 * 3 2 1 31 31 H 1.08999 * 109.51201 * 307.22695 * 3 2 1 32 32 H 1.09006 * 109.62777 * 186.45955 * 4 3 2 33 33 H 1.08994 * 109.78953 * 65.97510 * 4 3 2 34 34 H 1.08011 * 120.07645 * 359.97438 * 9 8 6 35 35 H 1.08002 * 119.93059 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47142 * 330.00126 * 12 11 10 37 37 H 1.09003 * 109.46774 * 209.99967 * 12 11 10 38 38 H 1.00903 * 111.00217 * 303.95618 * 13 12 11 39 39 H 1.09000 * 109.46710 * 300.00125 * 14 13 12 40 40 H 1.08997 * 109.47055 * 60.00210 * 14 13 12 41 41 H 0.97005 * 119.99545 * 180.02562 * 18 17 15 42 42 H 1.08005 * 119.92700 * 179.74597 * 23 11 10 43 43 H 1.08004 * 120.07256 * 180.26005 * 24 23 11 44 44 H 1.09001 * 109.62864 * 68.25091 * 25 5 4 45 45 H 1.09000 * 109.62518 * 188.83079 * 25 5 4 46 46 H 1.09003 * 109.48979 * 292.70480 * 26 2 1 47 47 H 1.08994 * 109.49174 * 52.76093 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5164 1.3311 -0.1825 5 7 4.0869 0.4460 0.8444 6 6 5.1054 0.8584 1.6248 7 8 5.4952 2.0078 1.5584 8 6 5.7487 -0.0874 2.5616 9 6 6.1285 0.3373 3.8357 10 6 6.7278 -0.5503 4.7052 11 6 6.9522 -1.8592 4.3168 12 6 7.6079 -2.8232 5.2717 13 7 6.5770 -3.4955 6.0736 14 6 7.1807 -4.4446 7.0184 15 6 6.0949 -5.1138 7.8211 16 1 5.0599 -4.8592 7.6471 17 6 6.4229 -6.0503 8.7783 18 7 7.6834 -6.3599 8.9906 19 14 5.0770 -6.8803 9.7728 20 1 4.1624 -7.6085 8.8571 21 1 5.6874 -7.8388 10.7288 22 1 4.3111 -5.8531 10.5235 23 6 6.5828 -2.2853 3.0533 24 6 5.9782 -1.4090 2.1759 25 6 3.5204 -0.9031 0.9928 26 6 1.9954 -0.7729 1.1330 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7554 1.8531 0.9478 31 1 1.5457 1.9341 -0.8181 32 1 3.9255 2.3351 -0.0688 33 1 3.7591 0.9468 -1.1731 34 1 5.9535 1.3587 4.1403 35 1 7.0225 -0.2229 5.6913 36 1 8.2834 -2.2784 5.9313 37 1 8.1716 -3.5663 4.7077 38 1 5.9989 -2.8238 6.5560 39 1 7.7418 -5.1990 6.4669 40 1 7.8529 -3.9107 7.6901 41 1 7.9141 -7.0191 9.6638 42 1 6.7645 -3.3072 2.7548 43 1 5.6866 -1.7439 1.1914 44 1 3.7605 -1.4999 0.1129 45 1 3.9322 -1.3771 1.8838 46 1 1.7554 -0.2612 2.0651 47 1 1.5452 -1.7655 1.1366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563457186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:07 Heat of formation + Delta-G solvation = 6.960696 kcal Electronic energy + Delta-G solvation = -25864.206920 eV Core-core repulsion = 22239.881790 eV Total energy + Delta-G solvation = -3624.325131 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.77098 -39.04605 -38.02693 -35.42872 -34.90832 -32.83921 -31.88865 -31.00194 -30.76934 -28.97107 -27.23599 -25.27248 -24.48232 -24.05870 -22.57988 -22.24388 -21.45170 -20.87344 -19.53167 -17.65240 -16.74524 -16.54911 -15.76202 -15.61374 -15.56370 -15.41273 -15.12799 -14.82496 -14.68774 -14.63238 -14.16620 -13.63854 -13.52779 -13.45506 -13.37190 -13.02196 -12.56882 -12.52846 -12.25821 -12.21450 -11.77193 -11.66945 -11.63722 -11.47653 -11.43557 -11.12778 -10.94088 -10.72329 -10.69638 -10.03092 -9.98036 -9.27929 -9.15328 -8.92602 -8.74884 -8.63817 -8.51442 -7.39916 -6.07481 -4.09917 0.93173 1.40081 2.58441 2.71033 3.30838 3.34943 3.37768 3.47560 3.77696 4.22723 4.39870 4.50256 4.55967 4.69226 4.79706 4.87450 4.89389 4.95080 4.99801 5.11305 5.13326 5.15471 5.28438 5.34864 5.36032 5.39799 5.46051 5.46528 5.47719 5.52585 5.65529 5.76869 5.85541 6.08823 6.12390 6.17036 6.30910 6.34825 6.52040 6.55821 6.72083 6.91426 7.12157 7.15957 7.34210 7.71707 7.93962 8.05975 8.29218 8.51754 8.98624 9.55142 11.03495 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002504 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.356321 B =11177.871214 C =12490.502857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.544 5.544 3 C 0.041 3.959 4 C 0.117 3.883 5 N -0.612 5.612 6 C 0.567 3.433 7 O -0.541 6.541 8 C -0.145 4.145 9 C -0.065 4.065 10 C -0.122 4.122 11 C -0.039 4.039 12 C 0.088 3.912 13 N -0.683 5.683 14 C 0.194 3.806 15 C -0.516 4.516 16 H 0.062 0.938 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.900 3.100 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.105 4.105 24 C -0.092 4.092 25 C 0.102 3.898 26 C 0.038 3.962 27 H 0.069 0.931 28 H 0.071 0.929 29 H 0.026 0.974 30 H 0.039 0.961 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.076 0.924 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.032 0.968 37 H 0.076 0.924 38 H 0.330 0.670 39 H 0.029 0.971 40 H -0.012 1.012 41 H 0.263 0.737 42 H 0.132 0.868 43 H 0.128 0.872 44 H 0.079 0.921 45 H 0.105 0.895 46 H 0.041 0.959 47 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.140 13.853 -19.262 25.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.268 5.268 3 C -0.088 4.088 4 C -0.006 4.006 5 N -0.346 5.346 6 C 0.357 3.643 7 O -0.418 6.418 8 C -0.148 4.148 9 C -0.084 4.084 10 C -0.140 4.140 11 C -0.040 4.040 12 C -0.041 4.041 13 N -0.313 5.313 14 C 0.067 3.933 15 C -0.554 4.554 16 H 0.080 0.920 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.728 3.272 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.203 1.203 23 C -0.124 4.124 24 C -0.111 4.111 25 C -0.020 4.020 26 C -0.090 4.090 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.044 0.956 30 H 0.057 0.943 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.094 0.906 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.050 0.950 37 H 0.095 0.905 38 H 0.147 0.853 39 H 0.047 0.953 40 H 0.005 0.995 41 H 0.072 0.928 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.059 0.941 47 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -9.771 13.626 -20.082 26.162 hybrid contribution -0.636 0.382 1.988 2.122 sum -10.407 14.008 -18.095 25.138 Atomic orbital electron populations 1.22372 0.86782 1.02415 1.00763 1.61966 1.08088 1.13513 1.43281 1.22495 0.95273 0.89630 1.01368 1.21686 0.91881 0.95953 0.91086 1.48049 1.34504 1.15728 1.36268 1.18499 0.79039 0.87182 0.79588 1.90757 1.63749 1.19033 1.68282 1.19690 1.05165 0.94224 0.95757 1.21069 0.95820 0.99528 0.91992 1.21079 0.99910 0.93176 0.99851 1.20298 0.95142 0.93900 0.94628 1.20981 0.93870 0.94594 0.94686 1.60771 1.21103 1.19679 1.29753 1.19590 0.94636 0.90184 0.88866 1.21120 0.93473 1.22529 1.18317 0.91984 1.24990 0.95597 0.96798 0.97157 1.69954 1.16491 1.33295 1.33948 0.86529 0.81721 0.79223 0.79734 1.20111 1.21318 1.20259 1.21035 0.98309 0.99812 0.93239 1.21335 0.98115 0.91843 0.99789 1.22337 0.92438 0.83517 1.03746 1.22628 0.95242 0.99236 0.91924 0.91194 0.91032 0.95557 0.94254 0.89461 0.88568 0.90609 0.85560 0.85481 0.95014 0.90526 0.85342 0.95261 0.99454 0.92791 0.85035 0.85453 0.90247 0.87740 0.94056 0.89097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.58 60.06 0.58 0.73 16 2 N -0.54 -4.23 4.88 -242.31 -1.18 -5.41 16 3 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 4 C 0.12 1.03 6.61 -3.61 -0.02 1.01 16 5 N -0.61 -6.37 3.00 -173.30 -0.52 -6.89 16 6 C 0.57 7.45 7.34 -12.33 -0.09 7.36 16 7 O -0.54 -8.74 16.38 5.31 0.09 -8.65 16 8 C -0.15 -1.84 5.14 -104.97 -0.54 -2.38 16 9 C -0.07 -0.85 9.64 -39.19 -0.38 -1.23 16 10 C -0.12 -1.62 9.68 -39.64 -0.38 -2.00 16 11 C -0.04 -0.56 5.40 -104.53 -0.56 -1.12 16 12 C 0.09 1.48 5.81 -4.98 -0.03 1.45 16 13 N -0.68 -14.02 6.48 -116.34 -0.75 -14.77 16 14 C 0.19 4.93 5.44 -4.97 -0.03 4.91 16 15 C -0.52 -14.33 9.32 -34.44 -0.32 -14.66 16 16 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -26.44 13.29 55.43 0.74 -25.70 16 19 Si 0.90 21.37 29.54 -169.99 -5.02 16.34 16 20 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 21 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 23 C -0.11 -1.35 9.68 -39.64 -0.38 -1.73 16 24 C -0.09 -1.05 7.41 -39.19 -0.29 -1.34 16 25 C 0.10 0.87 5.03 -3.37 -0.02 0.85 16 26 C 0.04 0.31 5.64 -3.46 -0.02 0.29 16 27 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 29 H 0.03 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.52 8.11 -51.93 -0.42 0.10 16 32 H 0.10 0.94 7.04 -51.93 -0.37 0.58 16 33 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.13 1.56 8.06 -52.48 -0.42 1.13 16 35 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 36 H 0.03 0.53 8.08 -51.93 -0.42 0.11 16 37 H 0.08 1.28 8.08 -51.93 -0.42 0.86 16 38 H 0.33 6.56 8.71 -39.29 -0.34 6.21 16 39 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 40 H -0.01 -0.33 8.14 -51.93 -0.42 -0.76 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.13 1.56 8.06 -52.48 -0.42 1.14 16 43 H 0.13 1.16 6.49 -52.48 -0.34 0.82 16 44 H 0.08 0.59 8.05 -51.93 -0.42 0.18 16 45 H 0.10 0.94 4.89 -51.93 -0.25 0.69 16 46 H 0.04 0.38 8.14 -51.93 -0.42 -0.05 16 47 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 LS Contribution 380.55 15.07 5.73 5.73 Total: -1.00 -32.01 380.55 -11.12 -43.14 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -7.59 Total: 2.30 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: -2.61 Total: -6.08 kcal Atomic # 7 Polarization: -51.06 SS G_CDS: -1.72 Total: -52.78 kcal Atomic # 8 Polarization: -8.74 SS G_CDS: 0.09 Total: -8.65 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.01 -11.12 -43.14 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563457186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.096 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.136 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds