Wall clock time and date at job start Tue Mar 31 2020 11:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 111.00202 * 2 1 4 4 C 1.53230 * 109.33967 * 187.25025 * 3 2 1 5 5 N 1.47082 * 108.52401 * 306.16637 * 4 3 2 6 6 C 1.34773 * 120.88273 * 231.19176 * 5 4 3 7 7 O 1.21558 * 120.00166 * 5.78793 * 6 5 4 8 8 C 1.47847 * 120.00065 * 185.79235 * 6 5 4 9 9 C 1.39569 * 120.14484 * 219.69567 * 8 6 5 10 10 C 1.37958 * 119.85550 * 179.97438 * 9 8 6 11 11 C 1.38360 * 120.14337 * 359.97438 * 10 9 8 12 12 C 1.50703 * 119.85389 * 179.97438 * 11 10 9 13 13 N 1.46894 * 109.46896 * 90.00034 * 12 11 10 14 14 C 1.46903 * 111.00057 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.47065 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00311 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99753 * 180.02562 * 15 14 13 18 18 N 1.31521 * 120.00131 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00095 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47306 * 59.99832 * 19 17 15 21 21 H 1.48502 * 109.47454 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.47200 * 299.99821 * 19 17 15 23 23 C 1.38359 * 120.29101 * 0.27789 * 11 10 9 24 24 C 1.37957 * 120.14434 * 359.48498 * 23 11 10 25 25 C 1.47075 * 118.23322 * 51.45956 * 5 4 3 26 26 C 1.46904 * 110.99619 * 124.29905 * 2 1 3 27 27 H 1.09001 * 109.46966 * 60.00110 * 1 2 3 28 28 H 1.09004 * 109.47482 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47700 * 300.00364 * 1 2 3 30 30 H 1.08998 * 109.49069 * 67.28667 * 3 2 1 31 31 H 1.08999 * 109.51201 * 307.22695 * 3 2 1 32 32 H 1.09006 * 109.62777 * 186.45955 * 4 3 2 33 33 H 1.08994 * 109.78953 * 65.97510 * 4 3 2 34 34 H 1.08011 * 120.07645 * 359.97438 * 9 8 6 35 35 H 1.08002 * 119.93059 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.47142 * 330.00126 * 12 11 10 37 37 H 1.09003 * 109.46774 * 209.99967 * 12 11 10 38 38 H 1.00903 * 111.00217 * 303.95618 * 13 12 11 39 39 H 1.09000 * 109.46710 * 300.00125 * 14 13 12 40 40 H 1.08997 * 109.47055 * 60.00210 * 14 13 12 41 41 H 0.97005 * 119.99545 * 180.02562 * 18 17 15 42 42 H 1.08005 * 119.92700 * 179.74597 * 23 11 10 43 43 H 1.08004 * 120.07256 * 180.26005 * 24 23 11 44 44 H 1.09001 * 109.62864 * 68.25091 * 25 5 4 45 45 H 1.09000 * 109.62518 * 188.83079 * 25 5 4 46 46 H 1.09003 * 109.48979 * 292.70480 * 26 2 1 47 47 H 1.08994 * 109.49174 * 52.76093 * 26 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 3.5164 1.3311 -0.1825 5 7 4.0869 0.4460 0.8444 6 6 5.1054 0.8584 1.6248 7 8 5.4952 2.0078 1.5584 8 6 5.7487 -0.0874 2.5616 9 6 6.1285 0.3373 3.8357 10 6 6.7278 -0.5503 4.7052 11 6 6.9522 -1.8592 4.3168 12 6 7.6079 -2.8232 5.2717 13 7 6.5770 -3.4955 6.0736 14 6 7.1807 -4.4446 7.0184 15 6 6.0949 -5.1138 7.8211 16 1 5.0599 -4.8592 7.6471 17 6 6.4229 -6.0503 8.7783 18 7 7.6834 -6.3599 8.9906 19 14 5.0770 -6.8803 9.7728 20 1 4.1624 -7.6085 8.8571 21 1 5.6874 -7.8388 10.7288 22 1 4.3111 -5.8531 10.5235 23 6 6.5828 -2.2853 3.0533 24 6 5.9782 -1.4090 2.1759 25 6 3.5204 -0.9031 0.9928 26 6 1.9954 -0.7729 1.1330 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 1.7554 1.8531 0.9478 31 1 1.5457 1.9341 -0.8181 32 1 3.9255 2.3351 -0.0688 33 1 3.7591 0.9468 -1.1731 34 1 5.9535 1.3587 4.1403 35 1 7.0225 -0.2229 5.6913 36 1 8.2834 -2.2784 5.9313 37 1 8.1716 -3.5663 4.7077 38 1 5.9989 -2.8238 6.5560 39 1 7.7418 -5.1990 6.4669 40 1 7.8529 -3.9107 7.6901 41 1 7.9141 -7.0191 9.6638 42 1 6.7645 -3.3072 2.7548 43 1 5.6866 -1.7439 1.1914 44 1 3.7605 -1.4999 0.1129 45 1 3.9322 -1.3771 1.8838 46 1 1.7554 -0.2612 2.0651 47 1 1.5452 -1.7655 1.1366 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563457186.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:21:06 Heat of formation + Delta-G solvation = -14.743159 kcal Electronic energy + Delta-G solvation = -25865.148070 eV Core-core repulsion = 22239.881790 eV Total energy + Delta-G solvation = -3625.266280 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.69450 -39.98816 -38.92465 -37.02854 -35.75375 -34.69882 -32.94110 -32.12624 -31.72013 -29.79768 -28.84382 -26.55400 -25.33813 -24.88443 -23.68848 -23.51517 -22.95617 -21.84503 -20.37231 -18.67560 -18.51612 -17.57428 -17.05227 -16.65525 -16.46134 -16.29915 -16.22308 -15.87930 -15.69808 -15.64622 -15.35166 -15.16673 -14.73218 -14.43760 -14.33491 -14.24804 -13.80107 -13.44433 -13.36729 -13.15189 -13.07600 -12.81098 -12.77206 -12.60392 -12.39906 -12.33548 -12.28984 -12.10937 -11.98269 -11.90439 -11.33256 -11.02998 -10.64849 -9.99870 -9.91213 -9.75913 -9.34689 -9.13557 -8.21609 -6.32710 -0.11970 0.39734 1.42928 1.45935 1.53936 1.59232 1.84800 2.40977 2.70993 2.91098 3.12003 3.34542 3.66850 3.78387 3.84811 3.91884 3.97870 3.99276 4.08419 4.20908 4.25153 4.32978 4.40692 4.47744 4.62247 4.62810 4.64157 4.69168 4.70628 4.77187 4.80687 4.86166 4.99994 5.03632 5.05034 5.09661 5.23177 5.27073 5.31551 5.42196 5.60335 5.64650 5.87940 5.94140 5.95493 6.01668 6.24579 6.41121 6.68394 6.87903 6.96931 7.38137 8.89558 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.015662 B = 0.002504 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1787.356321 B =11177.871214 C =12490.502857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.547 5.547 3 C 0.046 3.954 4 C 0.114 3.886 5 N -0.606 5.606 6 C 0.563 3.437 7 O -0.579 6.579 8 C -0.148 4.148 9 C -0.072 4.072 10 C -0.122 4.122 11 C -0.053 4.053 12 C 0.092 3.908 13 N -0.679 5.679 14 C 0.208 3.792 15 C -0.535 4.535 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.267 1.267 21 H -0.284 1.284 22 H -0.267 1.267 23 C -0.106 4.106 24 C -0.078 4.078 25 C 0.100 3.900 26 C 0.039 3.961 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.021 0.979 30 H 0.024 0.976 31 H 0.107 0.893 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.129 0.871 35 H 0.133 0.867 36 H 0.031 0.969 37 H 0.076 0.924 38 H 0.335 0.665 39 H 0.004 0.996 40 H -0.037 1.037 41 H 0.265 0.735 42 H 0.142 0.858 43 H 0.155 0.845 44 H 0.098 0.902 45 H 0.101 0.899 46 H 0.026 0.974 47 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 13.426 -20.610 27.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.082 4.082 4 C -0.008 4.008 5 N -0.338 5.338 6 C 0.354 3.646 7 O -0.460 6.460 8 C -0.151 4.151 9 C -0.091 4.091 10 C -0.141 4.141 11 C -0.053 4.053 12 C -0.037 4.037 13 N -0.309 5.309 14 C 0.080 3.920 15 C -0.574 4.574 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.574 5.574 19 Si 0.796 3.204 20 H -0.192 1.192 21 H -0.209 1.209 22 H -0.192 1.192 23 C -0.124 4.124 24 C -0.096 4.096 25 C -0.022 4.022 26 C -0.089 4.089 27 H 0.100 0.900 28 H 0.098 0.902 29 H 0.040 0.960 30 H 0.043 0.957 31 H 0.125 0.875 32 H 0.102 0.898 33 H 0.109 0.891 34 H 0.147 0.853 35 H 0.151 0.849 36 H 0.049 0.951 37 H 0.094 0.906 38 H 0.152 0.848 39 H 0.023 0.977 40 H -0.020 1.020 41 H 0.074 0.926 42 H 0.160 0.840 43 H 0.173 0.827 44 H 0.116 0.884 45 H 0.119 0.881 46 H 0.044 0.956 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -11.793 13.198 -21.462 27.819 hybrid contribution -0.038 0.566 2.306 2.375 sum -11.832 13.764 -19.156 26.389 Atomic orbital electron populations 1.22425 0.85695 1.03081 1.01113 1.62011 1.09087 1.13249 1.42880 1.22465 0.94417 0.89939 1.01429 1.21809 0.92612 0.95196 0.91196 1.48157 1.33416 1.16650 1.35550 1.18577 0.79538 0.86681 0.79844 1.90738 1.65193 1.20457 1.69601 1.19825 1.04898 0.94787 0.95565 1.21146 0.95996 0.99667 0.92326 1.21119 0.99798 0.92885 1.00261 1.20088 0.96614 0.93694 0.94930 1.20944 0.93197 0.94920 0.94598 1.60625 1.21933 1.19980 1.28386 1.19238 0.93673 0.90334 0.88763 1.21498 0.94030 1.22957 1.18876 0.91694 1.25936 0.98017 0.97417 0.98293 1.70083 1.18656 1.33958 1.34686 0.85401 0.78657 0.78211 0.78126 1.19174 1.20931 1.19213 1.21178 0.97956 1.00560 0.92755 1.21509 0.96729 0.90819 1.00529 1.22485 0.92756 0.82532 1.04379 1.22629 0.94892 0.99969 0.91436 0.90046 0.90246 0.96005 0.95723 0.87452 0.89830 0.89144 0.85333 0.84877 0.95099 0.90599 0.84821 0.97746 1.01979 0.92614 0.84012 0.82747 0.88362 0.88140 0.95554 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.58 127.69 1.22 1.47 16 2 N -0.55 -7.25 4.88 -920.54 -4.49 -11.74 16 3 C 0.05 0.63 5.62 86.38 0.49 1.11 16 4 C 0.11 1.86 6.61 86.35 0.57 2.43 16 5 N -0.61 -11.71 3.00 -820.47 -2.46 -14.18 16 6 C 0.56 14.39 7.34 86.79 0.64 15.03 16 7 O -0.58 -18.79 16.38 -3.90 -0.06 -18.86 16 8 C -0.15 -3.59 5.14 -20.09 -0.10 -3.69 16 9 C -0.07 -1.85 9.64 22.52 0.22 -1.64 16 10 C -0.12 -3.19 9.68 22.23 0.22 -2.98 16 11 C -0.05 -1.46 5.40 -19.81 -0.11 -1.57 16 12 C 0.09 3.11 5.81 85.56 0.50 3.60 16 13 N -0.68 -28.05 6.48 -521.98 -3.38 -31.43 16 14 C 0.21 10.84 5.44 85.56 0.47 11.30 16 15 C -0.54 -29.94 9.32 25.60 0.24 -29.70 16 16 H 0.06 3.51 7.81 -2.91 -0.02 3.49 16 17 C 0.00 0.10 5.46 84.65 0.46 0.56 16 18 N -0.93 -55.70 13.29 21.45 0.28 -55.41 16 19 Si 0.97 43.50 29.54 68.60 2.03 45.52 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 23 C -0.11 -2.53 9.68 22.23 0.22 -2.32 16 24 C -0.08 -1.61 7.41 22.53 0.17 -1.44 16 25 C 0.10 1.47 5.03 86.50 0.43 1.91 16 26 C 0.04 0.55 5.64 86.54 0.49 1.04 16 27 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.68 8.08 -2.38 -0.02 0.66 16 29 H 0.02 0.24 8.14 -2.39 -0.02 0.22 16 30 H 0.02 0.41 8.14 -2.39 -0.02 0.39 16 31 H 0.11 1.03 8.11 -2.39 -0.02 1.01 16 32 H 0.08 1.60 7.04 -2.38 -0.02 1.59 16 33 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.13 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.13 3.23 8.06 -2.91 -0.02 3.21 16 36 H 0.03 1.05 8.08 -2.39 -0.02 1.03 16 37 H 0.08 2.54 8.08 -2.39 -0.02 2.53 16 38 H 0.33 13.30 8.71 -89.69 -0.78 12.52 16 39 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 40 H -0.04 -2.11 8.14 -2.39 -0.02 -2.13 16 41 H 0.27 14.88 8.31 -92.70 -0.77 14.11 16 42 H 0.14 3.09 8.06 -2.91 -0.02 3.07 16 43 H 0.16 2.33 6.49 -2.91 -0.02 2.31 16 44 H 0.10 1.13 8.05 -2.39 -0.02 1.11 16 45 H 0.10 1.58 4.89 -2.39 -0.01 1.56 16 46 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.11 1.16 8.06 -2.39 -0.02 1.14 16 Total: -1.00 -68.98 380.55 -1.81 -70.79 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 0.18 Total: 20.19 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: 6.11 Total: -4.88 kcal Atomic # 7 Polarization: -102.71 SS G_CDS: -10.06 Total: -112.76 kcal Atomic # 8 Polarization: -18.79 SS G_CDS: -0.06 Total: -18.86 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -68.98 -1.81 -70.79 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563457186.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.044 kcal (2) G-P(sol) polarization free energy of solvation -68.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds