Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99860 * 2 1 4 4 C 1.50696 * 109.47600 * 66.04406 * 3 2 1 5 5 H 1.07998 * 120.00107 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00110 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99718 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00133 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47195 * 89.99638 * 8 6 4 10 10 H 1.48497 * 109.47230 * 210.00285 * 8 6 4 11 11 H 1.48503 * 109.47139 * 330.00205 * 8 6 4 12 12 C 1.46902 * 111.00465 * 236.03939 * 2 1 3 13 13 C 1.53003 * 109.47068 * 293.95629 * 12 2 1 14 14 H 1.09003 * 109.46909 * 59.99540 * 13 12 2 15 15 O 1.42902 * 109.47008 * 299.99860 * 13 12 2 16 16 C 1.52992 * 109.46918 * 179.97438 * 13 12 2 17 17 N 1.46506 * 109.47013 * 184.99676 * 16 13 12 18 18 C 1.39833 * 119.99919 * 180.02562 * 17 16 13 19 19 C 1.38413 * 120.17585 * 6.05830 * 18 17 16 20 20 C 1.38744 * 120.57601 * 180.02562 * 19 18 17 21 21 C 1.36632 * 120.59218 * 359.95767 * 20 19 18 22 22 C 1.39783 * 119.89865 * 0.02562 * 21 20 19 23 23 C 1.46479 * 133.97538 * 179.97438 * 22 21 20 24 24 C 1.34268 * 107.01845 * 180.02562 * 23 22 21 25 25 N 1.36751 * 109.91064 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.08107 * 179.97438 * 25 24 23 27 27 C 1.37852 * 109.83921 * 359.76289 * 25 24 23 28 28 H 1.09004 * 109.47132 * 183.95877 * 1 2 3 29 29 H 1.08995 * 109.47378 * 303.95942 * 1 2 3 30 30 H 1.09002 * 109.46918 * 63.96052 * 1 2 3 31 31 H 1.09000 * 109.47207 * 186.04601 * 3 2 1 32 32 H 1.09000 * 109.46567 * 306.03947 * 3 2 1 33 33 H 0.97006 * 119.99847 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47114 * 173.95537 * 12 2 1 35 35 H 1.09000 * 109.46837 * 53.95086 * 12 2 1 36 36 H 0.96699 * 113.99671 * 300.00057 * 15 13 12 37 37 H 1.08999 * 109.47523 * 305.00313 * 16 13 12 38 38 H 1.08998 * 109.46994 * 65.00147 * 16 13 12 39 39 H 0.96996 * 120.00263 * 0.02562 * 17 16 13 40 40 H 1.08000 * 119.71058 * 359.97438 * 19 18 17 41 41 H 1.08004 * 119.70551 * 179.97438 * 20 19 18 42 42 H 1.08002 * 120.05343 * 180.02562 * 21 20 19 43 43 H 1.08001 * 126.49144 * 0.05998 * 23 22 21 44 44 H 1.07999 * 125.04299 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46768 * 96.27916 * 26 25 24 46 46 H 1.09002 * 109.47369 * 216.27036 * 26 25 24 47 47 H 1.08996 * 109.47211 * 336.27453 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5117 2.0484 6 6 2.0267 3.3496 1.5283 7 7 2.7119 4.0019 0.6147 8 14 1.5817 4.1875 3.1374 9 1 2.6582 3.9515 4.1326 10 1 1.4291 5.6470 2.9098 11 1 0.3039 3.6300 3.6489 12 6 1.9956 -0.7661 -1.1375 13 6 1.6316 -2.2427 -0.9701 14 1 0.5473 -2.3476 -0.9321 15 8 2.2009 -2.7391 0.2430 16 6 2.1794 -3.0405 -2.1551 17 7 1.7302 -4.4315 -2.0568 18 6 2.1075 -5.3587 -3.0332 19 6 3.0050 -4.9996 -4.0238 20 6 3.3847 -5.9127 -4.9969 21 6 2.8800 -7.1824 -4.9938 22 6 1.9724 -7.5690 -4.0036 23 6 1.2560 -8.8125 -3.7099 24 6 0.5107 -8.5877 -2.6159 25 7 0.6910 -7.3022 -2.1857 26 6 0.0366 -6.7053 -1.0188 27 6 1.5841 -6.6534 -3.0113 28 1 -0.3633 -1.0252 0.0710 29 1 -0.3634 0.5740 0.8523 30 1 -0.3633 0.4511 -0.9234 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9272 -0.8310 33 1 2.9859 4.9183 0.7763 34 1 3.0798 -0.6612 -1.1754 35 1 1.5612 -0.3875 -2.0627 36 1 3.1653 -2.6771 0.2790 37 1 1.8146 -2.6057 -3.0856 38 1 3.2689 -3.0087 -2.1418 39 1 1.1711 -4.7093 -1.3145 40 1 3.4127 -3.9996 -4.0398 41 1 4.0857 -5.6173 -5.7636 42 1 3.1819 -7.8863 -5.7553 43 1 1.3163 -9.7355 -4.2675 44 1 -0.1352 -9.3143 -2.1456 45 1 0.7023 -6.7669 -0.1579 46 1 -0.1934 -5.6602 -1.2261 47 1 -0.8859 -7.2447 -0.8041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564723527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = 27.007523 kcal Electronic energy + Delta-G solvation = -26019.326184 eV Core-core repulsion = 22395.870349 eV Total energy + Delta-G solvation = -3623.455835 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.44463 -38.61597 -37.35549 -35.89298 -35.02596 -32.58743 -32.29276 -30.62617 -29.07429 -28.72407 -27.18876 -26.43066 -25.64821 -23.99589 -22.45581 -21.97830 -20.94543 -20.42538 -20.05743 -17.57886 -16.76740 -16.63671 -16.15778 -16.05786 -15.80025 -15.54644 -15.13443 -14.75007 -14.50967 -14.27726 -13.92262 -13.76510 -13.57576 -13.37436 -13.07091 -12.94163 -12.84399 -12.53921 -12.38310 -11.96467 -11.58707 -11.46370 -11.40784 -11.26638 -11.14967 -10.95662 -10.84472 -10.68524 -10.39934 -10.32422 -10.08605 -9.73278 -9.19840 -8.76777 -8.47012 -8.26630 -7.28256 -6.99770 -6.06297 -4.07534 1.23939 1.63090 2.63021 2.63513 3.25809 3.30103 3.35987 3.39694 3.94801 4.35747 4.43809 4.49992 4.57840 4.64279 4.67957 4.87149 4.97709 5.01327 5.12093 5.20411 5.23370 5.30665 5.35855 5.44747 5.53677 5.55213 5.59421 5.70699 5.82355 5.92599 5.96756 6.10093 6.17982 6.26356 6.29098 6.54797 6.69262 6.73423 6.74165 6.95582 7.12242 7.20598 7.27049 7.31007 7.60221 7.74885 7.84017 8.03616 8.13580 8.49400 9.00175 9.56795 11.04633 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028208 B = 0.002267 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.379626 B =12348.801596 C =13077.384394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.064 0.936 6 C 0.054 3.946 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.027 3.973 13 C 0.103 3.897 14 H 0.097 0.903 15 O -0.545 6.545 16 C 0.093 3.907 17 N -0.748 5.748 18 C 0.221 3.779 19 C -0.200 4.200 20 C -0.091 4.091 21 C -0.139 4.139 22 C -0.068 4.068 23 C -0.215 4.215 24 C 0.052 3.948 25 N -0.483 5.483 26 C 0.072 3.928 27 C 0.035 3.965 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.009 0.991 31 H 0.029 0.971 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.374 0.626 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.397 0.603 40 H 0.123 0.877 41 H 0.118 0.882 42 H 0.115 0.885 43 H 0.144 0.856 44 H 0.165 0.835 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.999 -24.103 -9.169 25.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.082 0.918 6 C -0.147 4.147 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.103 4.103 13 C 0.042 3.958 14 H 0.115 0.885 15 O -0.350 6.350 16 C -0.032 4.032 17 N -0.382 5.382 18 C 0.117 3.883 19 C -0.225 4.225 20 C -0.111 4.111 21 C -0.159 4.159 22 C -0.074 4.074 23 C -0.241 4.241 24 C -0.074 4.074 25 N -0.166 5.166 26 C -0.070 4.070 27 C -0.072 4.072 28 H 0.063 0.937 29 H 0.094 0.906 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.221 0.779 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.234 0.766 40 H 0.141 0.859 41 H 0.136 0.864 42 H 0.133 0.867 43 H 0.162 0.838 44 H 0.183 0.817 45 H 0.091 0.909 46 H 0.096 0.904 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -3.495 -23.910 -8.345 25.564 hybrid contribution -0.120 1.091 0.206 1.117 sum -3.615 -22.818 -8.139 24.495 Atomic orbital electron populations 1.22254 0.89008 0.99438 1.00546 1.62027 1.06828 1.17559 1.38896 1.19750 0.95313 0.81450 0.96714 1.21146 1.34830 0.96866 1.01656 0.91820 1.24999 0.95318 0.97354 0.97038 1.69958 1.38419 1.11484 1.34036 0.86479 0.78881 0.78386 0.83550 1.20592 1.21328 1.19873 1.22641 1.00832 0.93066 0.93782 1.22115 0.98477 0.92006 0.83155 0.88494 1.86552 1.25577 1.84874 1.37977 1.22093 0.99644 0.81757 0.99693 1.44824 1.58329 1.07832 1.27178 1.16924 0.94745 0.85637 0.91031 1.20279 1.03096 1.01045 0.98089 1.20349 0.99637 0.93029 0.98091 1.19982 0.99978 0.96622 0.99364 1.19011 0.99364 0.93237 0.95739 1.21623 1.03869 0.97995 1.00600 1.21754 1.02352 0.85702 0.97616 1.43697 1.37807 1.10463 1.24681 1.22064 0.98356 0.99514 0.87030 1.17850 0.99496 0.93719 0.96143 0.93688 0.90577 0.97238 0.95301 0.99218 0.92909 0.90818 0.95018 0.77907 0.91454 0.91764 0.76578 0.85938 0.86355 0.86657 0.83804 0.81746 0.90936 0.90374 0.89443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.69 9.14 60.06 0.55 1.24 16 2 N -0.53 -11.05 4.62 -244.37 -1.13 -12.18 16 3 C 0.19 4.94 4.72 -4.98 -0.02 4.92 16 4 C -0.51 -14.14 8.46 -34.44 -0.29 -14.43 16 5 H 0.06 1.77 7.12 -52.49 -0.37 1.40 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.55 13.29 55.43 0.74 -25.81 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.45 7.11 56.52 0.40 -6.04 16 12 C 0.03 0.44 4.62 -3.82 -0.02 0.42 16 13 C 0.10 1.35 2.87 -26.73 -0.08 1.28 16 14 H 0.10 1.31 6.55 -51.93 -0.34 0.97 16 15 O -0.55 -7.76 13.15 -35.23 -0.46 -8.22 16 16 C 0.09 1.05 4.60 -4.04 -0.02 1.03 16 17 N -0.75 -8.55 5.62 -58.52 -0.33 -8.88 16 18 C 0.22 2.75 6.66 -83.61 -0.56 2.19 16 19 C -0.20 -2.37 9.31 -39.33 -0.37 -2.74 16 20 C -0.09 -1.00 9.97 -39.97 -0.40 -1.40 16 21 C -0.14 -1.56 10.05 -39.58 -0.40 -1.96 16 22 C -0.07 -0.83 6.37 -105.15 -0.67 -1.50 16 23 C -0.22 -2.15 11.08 -37.66 -0.42 -2.57 16 24 C 0.05 0.46 11.27 -16.76 -0.19 0.27 16 25 N -0.48 -4.93 3.18 -121.66 -0.39 -5.32 16 26 C 0.07 0.54 10.01 59.85 0.60 1.14 16 27 C 0.03 0.43 6.82 -83.78 -0.57 -0.14 16 28 H 0.04 0.74 6.47 -51.93 -0.34 0.40 16 29 H 0.08 1.59 6.76 -51.93 -0.35 1.24 16 30 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.37 16 32 H -0.01 -0.27 8.12 -51.93 -0.42 -0.70 16 33 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 34 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 36 H 0.37 4.47 9.05 45.56 0.41 4.89 16 37 H 0.07 0.74 8.13 -51.93 -0.42 0.32 16 38 H 0.06 0.69 7.72 -51.93 -0.40 0.29 16 39 H 0.40 4.34 5.11 -40.82 -0.21 4.13 16 40 H 0.12 1.32 6.71 -52.49 -0.35 0.97 16 41 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 42 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 43 H 0.14 1.11 8.06 -52.49 -0.42 0.68 16 44 H 0.17 0.86 8.06 -52.49 -0.42 0.44 16 45 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 46 H 0.08 0.61 6.14 -51.93 -0.32 0.30 16 47 H 0.09 0.43 8.11 -51.93 -0.42 0.01 16 LS Contribution 378.93 15.07 5.71 5.71 Total: -1.00 -32.78 378.93 -10.28 -43.06 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -6.45 Total: 5.90 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -2.94 Total: -10.82 kcal Atomic # 7 Polarization: -51.08 SS G_CDS: -1.11 Total: -52.19 kcal Atomic # 8 Polarization: -7.76 SS G_CDS: -0.46 Total: -8.22 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.78 -10.28 -43.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564723527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.070 kcal (2) G-P(sol) polarization free energy of solvation -32.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.063 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds