Wall clock time and date at job start Tue Mar 31 2020 11:07:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46898 * 110.99860 * 2 1 4 4 C 1.50696 * 109.47600 * 66.04406 * 3 2 1 5 5 H 1.07998 * 120.00107 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00110 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99718 * 359.97438 * 6 4 3 8 8 Si 1.86797 * 120.00133 * 179.97438 * 6 4 3 9 9 H 1.48497 * 109.47195 * 89.99638 * 8 6 4 10 10 H 1.48497 * 109.47230 * 210.00285 * 8 6 4 11 11 H 1.48503 * 109.47139 * 330.00205 * 8 6 4 12 12 C 1.46902 * 111.00465 * 236.03939 * 2 1 3 13 13 C 1.53003 * 109.47068 * 293.95629 * 12 2 1 14 14 H 1.09003 * 109.46909 * 59.99540 * 13 12 2 15 15 O 1.42902 * 109.47008 * 299.99860 * 13 12 2 16 16 C 1.52992 * 109.46918 * 179.97438 * 13 12 2 17 17 N 1.46506 * 109.47013 * 184.99676 * 16 13 12 18 18 C 1.39833 * 119.99919 * 180.02562 * 17 16 13 19 19 C 1.38413 * 120.17585 * 6.05830 * 18 17 16 20 20 C 1.38744 * 120.57601 * 180.02562 * 19 18 17 21 21 C 1.36632 * 120.59218 * 359.95767 * 20 19 18 22 22 C 1.39783 * 119.89865 * 0.02562 * 21 20 19 23 23 C 1.46479 * 133.97538 * 179.97438 * 22 21 20 24 24 C 1.34268 * 107.01845 * 180.02562 * 23 22 21 25 25 N 1.36751 * 109.91064 * 0.02562 * 24 23 22 26 26 C 1.46500 * 125.08107 * 179.97438 * 25 24 23 27 27 C 1.37852 * 109.83921 * 359.76289 * 25 24 23 28 28 H 1.09004 * 109.47132 * 183.95877 * 1 2 3 29 29 H 1.08995 * 109.47378 * 303.95942 * 1 2 3 30 30 H 1.09002 * 109.46918 * 63.96052 * 1 2 3 31 31 H 1.09000 * 109.47207 * 186.04601 * 3 2 1 32 32 H 1.09000 * 109.46567 * 306.03947 * 3 2 1 33 33 H 0.97006 * 119.99847 * 179.97438 * 7 6 4 34 34 H 1.08993 * 109.47114 * 173.95537 * 12 2 1 35 35 H 1.09000 * 109.46837 * 53.95086 * 12 2 1 36 36 H 0.96699 * 113.99671 * 300.00057 * 15 13 12 37 37 H 1.08999 * 109.47523 * 305.00313 * 16 13 12 38 38 H 1.08998 * 109.46994 * 65.00147 * 16 13 12 39 39 H 0.96996 * 120.00263 * 0.02562 * 17 16 13 40 40 H 1.08000 * 119.71058 * 359.97438 * 19 18 17 41 41 H 1.08004 * 119.70551 * 179.97438 * 20 19 18 42 42 H 1.08002 * 120.05343 * 180.02562 * 21 20 19 43 43 H 1.08001 * 126.49144 * 0.05998 * 23 22 21 44 44 H 1.07999 * 125.04299 * 180.02562 * 24 23 22 45 45 H 1.09002 * 109.46768 * 96.27916 * 26 25 24 46 46 H 1.09002 * 109.47369 * 216.27036 * 26 25 24 47 47 H 1.08996 * 109.47211 * 336.27453 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0739 1.5117 2.0484 6 6 2.0267 3.3496 1.5283 7 7 2.7119 4.0019 0.6147 8 14 1.5817 4.1875 3.1374 9 1 2.6582 3.9515 4.1326 10 1 1.4291 5.6470 2.9098 11 1 0.3039 3.6300 3.6489 12 6 1.9956 -0.7661 -1.1375 13 6 1.6316 -2.2427 -0.9701 14 1 0.5473 -2.3476 -0.9321 15 8 2.2009 -2.7391 0.2430 16 6 2.1794 -3.0405 -2.1551 17 7 1.7302 -4.4315 -2.0568 18 6 2.1075 -5.3587 -3.0332 19 6 3.0050 -4.9996 -4.0238 20 6 3.3847 -5.9127 -4.9969 21 6 2.8800 -7.1824 -4.9938 22 6 1.9724 -7.5690 -4.0036 23 6 1.2560 -8.8125 -3.7099 24 6 0.5107 -8.5877 -2.6159 25 7 0.6910 -7.3022 -2.1857 26 6 0.0366 -6.7053 -1.0188 27 6 1.5841 -6.6534 -3.0113 28 1 -0.3633 -1.0252 0.0710 29 1 -0.3634 0.5740 0.8523 30 1 -0.3633 0.4511 -0.9234 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9272 -0.8310 33 1 2.9859 4.9183 0.7763 34 1 3.0798 -0.6612 -1.1754 35 1 1.5612 -0.3875 -2.0627 36 1 3.1653 -2.6771 0.2790 37 1 1.8146 -2.6057 -3.0856 38 1 3.2689 -3.0087 -2.1418 39 1 1.1711 -4.7093 -1.3145 40 1 3.4127 -3.9996 -4.0398 41 1 4.0857 -5.6173 -5.7636 42 1 3.1819 -7.8863 -5.7553 43 1 1.3163 -9.7355 -4.2675 44 1 -0.1352 -9.3143 -2.1456 45 1 0.7023 -6.7669 -0.1579 46 1 -0.1934 -5.6602 -1.2261 47 1 -0.8859 -7.2447 -0.8041 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564723527.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:43 Heat of formation + Delta-G solvation = 4.337205 kcal Electronic energy + Delta-G solvation = -26020.309243 eV Core-core repulsion = 22395.870349 eV Total energy + Delta-G solvation = -3624.438894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.19599 -39.77006 -38.33169 -37.24372 -36.02063 -34.63402 -33.07079 -31.66666 -30.13020 -29.63257 -28.95443 -27.57385 -26.63934 -25.47866 -23.37311 -23.19224 -21.91790 -21.85630 -20.93313 -18.59223 -18.38210 -17.50817 -17.38623 -17.23363 -16.76420 -16.58604 -16.26748 -16.10950 -15.75124 -15.48731 -15.29590 -14.94384 -14.52593 -14.40559 -14.16647 -13.84991 -13.81204 -13.61771 -13.51523 -13.24933 -13.09877 -12.85527 -12.64087 -12.55574 -12.42579 -12.29809 -12.22458 -12.05892 -11.99113 -11.67063 -11.44041 -11.16883 -10.84578 -10.62851 -9.54638 -9.06367 -8.99741 -8.21986 -7.82434 -6.31673 0.43127 0.78910 1.40424 1.41705 1.52651 1.90155 1.96210 2.31968 2.40979 3.09923 3.10468 3.21190 3.56765 3.78624 3.85622 3.88412 3.97026 4.07198 4.14436 4.20154 4.33636 4.41282 4.48005 4.52435 4.60082 4.62865 4.66948 4.70201 4.72810 4.80113 4.95612 5.02813 5.06044 5.06900 5.14599 5.16259 5.29291 5.46095 5.63217 5.75413 5.91706 5.97915 6.03086 6.13065 6.28804 6.43181 6.49330 6.60029 6.73944 6.83596 6.86850 7.37996 8.88915 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.028208 B = 0.002267 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.379626 B =12348.801596 C =13077.384394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.001 3.999 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.265 1.265 12 C 0.025 3.975 13 C 0.120 3.880 14 H 0.099 0.901 15 O -0.558 6.558 16 C 0.104 3.896 17 N -0.747 5.747 18 C 0.207 3.793 19 C -0.215 4.215 20 C -0.099 4.099 21 C -0.149 4.149 22 C -0.093 4.093 23 C -0.235 4.235 24 C 0.059 3.941 25 N -0.488 5.488 26 C 0.068 3.932 27 C 0.010 3.990 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.011 0.989 31 H 0.006 0.994 32 H -0.038 1.038 33 H 0.264 0.736 34 H 0.073 0.927 35 H 0.036 0.964 36 H 0.383 0.617 37 H 0.071 0.929 38 H 0.070 0.930 39 H 0.399 0.601 40 H 0.128 0.872 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.162 0.838 44 H 0.203 0.797 45 H 0.074 0.926 46 H 0.071 0.929 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.974 -25.710 -8.487 27.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.079 0.921 6 C -0.197 4.197 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.199 1.199 10 H -0.208 1.208 11 H -0.189 1.189 12 C -0.104 4.104 13 C 0.060 3.940 14 H 0.116 0.884 15 O -0.364 6.364 16 C -0.021 4.021 17 N -0.380 5.380 18 C 0.103 3.897 19 C -0.240 4.240 20 C -0.119 4.119 21 C -0.170 4.170 22 C -0.099 4.099 23 C -0.260 4.260 24 C -0.067 4.067 25 N -0.171 5.171 26 C -0.073 4.073 27 C -0.098 4.098 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.024 0.976 32 H -0.021 1.021 33 H 0.073 0.927 34 H 0.092 0.908 35 H 0.055 0.945 36 H 0.232 0.768 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.237 0.763 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.149 0.851 43 H 0.180 0.820 44 H 0.220 0.780 45 H 0.093 0.907 46 H 0.090 0.910 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -4.475 -25.544 -7.663 27.042 hybrid contribution 0.180 1.503 -0.051 1.514 sum -4.295 -24.041 -7.713 25.611 Atomic orbital electron populations 1.22238 0.87881 1.01076 0.99710 1.61924 1.07930 1.14912 1.41404 1.19399 0.93745 0.83840 0.94922 1.21455 1.34795 0.97438 1.02392 0.92061 1.25908 0.95084 0.98090 1.00659 1.70079 1.39388 1.11911 1.36086 0.85390 0.78945 0.77253 0.79076 1.19874 1.20765 1.18936 1.22743 1.00741 0.94526 0.92369 1.21889 0.98522 0.89843 0.83711 0.88361 1.86525 1.26601 1.84759 1.38490 1.21917 0.99871 0.81606 0.98712 1.44739 1.58501 1.07577 1.27226 1.17085 0.95215 0.86024 0.91402 1.20486 1.03441 1.01595 0.98490 1.20618 0.99905 0.92949 0.98382 1.20270 0.99904 0.97118 0.99705 1.19480 0.99922 0.94393 0.96086 1.21952 1.04309 0.98104 1.01627 1.22400 1.01737 0.85623 0.96969 1.43966 1.37336 1.10877 1.24931 1.22235 0.99436 0.99539 0.86118 1.18088 1.00535 0.93983 0.97146 0.90510 0.92644 0.97037 0.97637 1.02069 0.92684 0.90848 0.94545 0.76814 0.91058 0.91192 0.76345 0.85413 0.84466 0.85131 0.82036 0.78017 0.90731 0.91025 0.86619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.48 9.14 127.69 1.17 2.65 16 2 N -0.54 -22.48 4.62 -927.06 -4.28 -26.76 16 3 C 0.21 10.91 4.72 85.56 0.40 11.31 16 4 C -0.52 -29.56 8.46 25.60 0.22 -29.35 16 5 H 0.06 3.43 7.12 -2.91 -0.02 3.41 16 6 C 0.00 0.03 5.46 84.65 0.46 0.49 16 7 N -0.93 -55.99 13.29 21.45 0.28 -55.71 16 8 Si 0.97 44.24 29.54 68.60 2.03 46.27 16 9 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 12 C 0.03 0.82 4.62 86.30 0.40 1.22 16 13 C 0.12 3.02 2.87 30.59 0.09 3.11 16 14 H 0.10 2.47 6.55 -2.39 -0.02 2.45 16 15 O -0.56 -15.12 13.15 -148.98 -1.96 -17.08 16 16 C 0.10 2.22 4.60 86.38 0.40 2.61 16 17 N -0.75 -16.34 5.62 -339.05 -1.91 -18.25 16 18 C 0.21 5.04 6.66 38.25 0.25 5.30 16 19 C -0.21 -5.02 9.31 22.43 0.21 -4.81 16 20 C -0.10 -2.13 9.97 22.01 0.22 -1.91 16 21 C -0.15 -3.29 10.05 22.27 0.22 -3.07 16 22 C -0.09 -2.21 6.37 -20.21 -0.13 -2.34 16 23 C -0.23 -4.34 11.08 23.51 0.26 -4.08 16 24 C 0.06 0.91 11.27 83.02 0.94 1.85 16 25 N -0.49 -9.17 3.18 -538.83 -1.71 -10.89 16 26 C 0.07 0.88 10.01 127.77 1.28 2.16 16 27 C 0.01 0.24 6.82 39.09 0.27 0.50 16 28 H 0.08 2.39 6.47 -2.38 -0.02 2.38 16 29 H 0.05 2.30 6.76 -2.39 -0.02 2.29 16 30 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.01 0.31 7.93 -2.39 -0.02 0.29 16 32 H -0.04 -2.19 8.12 -2.39 -0.02 -2.21 16 33 H 0.26 14.90 8.31 -92.70 -0.77 14.12 16 34 H 0.07 2.35 7.93 -2.39 -0.02 2.33 16 35 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 36 H 0.38 8.75 9.05 -74.06 -0.67 8.08 16 37 H 0.07 1.48 8.13 -2.39 -0.02 1.46 16 38 H 0.07 1.42 7.72 -2.39 -0.02 1.41 16 39 H 0.40 8.27 5.11 -92.71 -0.47 7.80 16 40 H 0.13 2.70 6.71 -2.91 -0.02 2.68 16 41 H 0.14 2.26 8.06 -2.91 -0.02 2.24 16 42 H 0.13 2.30 8.06 -2.91 -0.02 2.28 16 43 H 0.16 2.21 8.06 -2.91 -0.02 2.18 16 44 H 0.20 1.36 8.06 -2.91 -0.02 1.34 16 45 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 46 H 0.07 1.02 6.14 -2.39 -0.01 1.01 16 47 H 0.12 0.80 8.11 -2.39 -0.02 0.78 16 Total: -1.00 -71.15 378.93 -1.06 -72.21 By element: Atomic # 1 Polarization: 24.73 SS G_CDS: -0.16 Total: 24.56 kcal Atomic # 6 Polarization: -21.01 SS G_CDS: 6.65 Total: -14.36 kcal Atomic # 7 Polarization: -103.99 SS G_CDS: -7.62 Total: -111.61 kcal Atomic # 8 Polarization: -15.12 SS G_CDS: -1.96 Total: -17.08 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Total: -71.15 -1.06 -72.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564723527.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.551 kcal (2) G-P(sol) polarization free energy of solvation -71.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.214 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds