Wall clock time and date at job start Tue Mar 31 2020 11:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47594 * 119.99797 * 8 6 4 11 11 H 1.48499 * 109.47226 * 240.00455 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39798 * 120.00115 * 179.97438 * 17 16 13 19 19 C 1.39441 * 119.75033 * 359.97438 * 18 17 16 20 20 C 1.36529 * 120.45199 * 179.97438 * 19 18 17 21 21 C 1.39666 * 119.86783 * 0.03066 * 20 19 18 22 22 C 1.46567 * 133.90212 * 179.97438 * 21 20 19 23 23 C 1.34176 * 107.01602 * 180.02562 * 22 21 20 24 24 N 1.37006 * 109.91250 * 359.97438 * 23 22 21 25 25 C 1.46505 * 125.07077 * 179.97438 * 24 23 22 26 26 C 1.37702 * 109.85326 * 0.02562 * 24 23 22 27 27 C 1.38389 * 119.74715 * 179.72586 * 18 17 16 28 28 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 29 29 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 30 30 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 31 31 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 32 32 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 33 33 H 0.96993 * 120.00483 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 35 35 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 36 36 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 37 37 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 38 38 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 39 39 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 40 40 H 1.07993 * 119.77033 * 0.02562 * 19 18 17 41 41 H 1.08003 * 120.05953 * 179.97438 * 20 19 18 42 42 H 1.08007 * 126.49498 * 0.03604 * 22 21 20 43 43 H 1.08004 * 125.04475 * 179.97438 * 23 22 21 44 44 H 1.09008 * 109.46703 * 89.97915 * 25 24 23 45 45 H 1.09000 * 109.47319 * 209.97428 * 25 24 23 46 46 H 1.08996 * 109.47214 * 329.98044 * 25 24 23 47 47 H 1.08003 * 120.13461 * 359.97152 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7137 4.0012 0.6158 8 14 1.5839 4.1864 3.1387 9 1 0.8156 3.2441 3.9914 10 1 2.8258 4.5929 3.8441 11 1 0.7569 5.3879 2.8601 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1304 -3.0002 -2.7573 19 6 5.5329 -3.3338 -3.9722 20 6 6.2338 -4.0184 -4.9231 21 6 7.5582 -4.3886 -4.6790 22 6 8.5719 -5.1083 -5.4554 23 6 9.6778 -5.1673 -4.6980 24 7 9.4558 -4.5432 -3.4987 25 6 10.4408 -4.4142 -2.4218 26 6 8.1685 -4.0564 -3.4560 27 6 7.4433 -3.3540 -2.4996 28 1 -0.3633 0.5899 -0.8415 29 1 -0.3634 -1.0238 -0.0902 30 1 -0.3633 0.4336 0.9316 31 1 3.0797 1.3443 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9882 4.9173 0.7778 34 1 1.3932 -1.6631 -1.2814 35 1 1.9552 -0.1531 -2.0381 36 1 2.9843 -2.8273 0.2042 37 1 3.4166 -2.8115 -2.2453 38 1 3.9751 -1.2717 -2.9419 39 1 5.8112 -2.0650 -0.9476 40 1 4.5090 -3.0480 -4.1626 41 1 5.7646 -4.2738 -5.8618 42 1 8.4515 -5.5141 -6.4491 43 1 10.6054 -5.6370 -4.9903 44 1 11.0089 -3.4938 -2.5575 45 1 9.9271 -4.3856 -1.4609 46 1 11.1193 -5.2668 -2.4460 47 1 7.9016 -3.0886 -1.5583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000564868611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:47 Heat of formation + Delta-G solvation = 22.932477 kcal Electronic energy + Delta-G solvation = -25591.311703 eV Core-core repulsion = 21967.679161 eV Total energy + Delta-G solvation = -3623.632542 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.22697 -38.66991 -37.46754 -35.64626 -34.30918 -32.54632 -32.45661 -30.56142 -29.91651 -27.77605 -27.24174 -26.45318 -25.40881 -23.56833 -22.84429 -21.69894 -20.97898 -20.21424 -19.94151 -17.25590 -17.06276 -16.58315 -16.34576 -15.76269 -15.51375 -15.37982 -14.81847 -14.67658 -14.34725 -14.21187 -13.75451 -13.67683 -13.49181 -13.26615 -13.22012 -12.89517 -12.75728 -12.55628 -12.40056 -11.96960 -11.72911 -11.50145 -11.39101 -11.18948 -10.96390 -10.93100 -10.73174 -10.64326 -10.41244 -9.94408 -9.79943 -9.71485 -9.15883 -9.07618 -8.43686 -7.87088 -7.24344 -7.02502 -6.03093 -4.03686 1.25422 1.77957 2.71596 2.72187 3.31150 3.38504 3.43619 3.48530 4.00505 4.41877 4.55595 4.62621 4.71268 4.77252 4.79202 4.94889 5.11956 5.19348 5.22514 5.29485 5.34147 5.34844 5.42170 5.52236 5.56748 5.62266 5.66322 5.70010 5.86395 5.99261 6.02960 6.05107 6.29956 6.32529 6.39011 6.55525 6.61384 6.69581 6.82023 7.13169 7.23410 7.27101 7.28952 7.43517 7.78381 7.83121 8.00913 8.06795 8.18013 8.53336 9.03995 9.60443 11.08037 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.002237 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.208904 B =12515.257634 C =13233.798221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.532 5.532 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.064 0.936 6 C 0.053 3.947 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.028 3.972 13 C 0.105 3.895 14 H 0.109 0.891 15 O -0.540 6.540 16 C 0.094 3.906 17 N -0.736 5.736 18 C 0.247 3.753 19 C -0.209 4.209 20 C -0.026 4.026 21 C -0.168 4.168 22 C -0.190 4.190 23 C 0.026 3.974 24 N -0.494 5.494 25 C 0.081 3.919 26 C 0.149 3.851 27 C -0.228 4.228 28 H 0.012 0.988 29 H 0.043 0.957 30 H 0.072 0.928 31 H 0.030 0.970 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.035 0.965 36 H 0.365 0.635 37 H 0.060 0.940 38 H 0.067 0.933 39 H 0.405 0.595 40 H 0.121 0.879 41 H 0.120 0.880 42 H 0.141 0.859 43 H 0.162 0.838 44 H 0.066 0.934 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.072 -19.270 -11.072 24.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.067 3.933 4 C -0.542 4.542 5 H 0.082 0.918 6 C -0.148 4.148 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.102 4.102 13 C 0.044 3.956 14 H 0.126 0.874 15 O -0.343 6.343 16 C -0.031 4.031 17 N -0.365 5.365 18 C 0.141 3.859 19 C -0.231 4.231 20 C -0.046 4.046 21 C -0.173 4.173 22 C -0.215 4.215 23 C -0.097 4.097 24 N -0.180 5.180 25 C -0.061 4.061 26 C 0.042 3.958 27 C -0.255 4.255 28 H 0.031 0.969 29 H 0.061 0.939 30 H 0.091 0.909 31 H 0.048 0.952 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.081 0.919 35 H 0.053 0.947 36 H 0.210 0.790 37 H 0.078 0.922 38 H 0.085 0.915 39 H 0.240 0.760 40 H 0.139 0.861 41 H 0.138 0.862 42 H 0.159 0.841 43 H 0.179 0.821 44 H 0.084 0.916 45 H 0.098 0.902 46 H 0.097 0.903 47 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 11.728 -18.768 -10.263 24.395 hybrid contribution -0.526 0.732 0.111 0.908 sum 11.203 -18.035 -10.152 23.534 Atomic orbital electron populations 1.22195 0.88669 0.98657 1.01231 1.62031 1.06661 1.17854 1.39022 1.19796 0.95404 0.81450 0.96662 1.21185 1.34554 0.96809 1.01671 0.91814 1.24997 0.95343 0.97401 0.97012 1.69962 1.38524 1.11417 1.34076 0.86441 0.78151 0.79256 0.83574 1.19652 1.21010 1.21165 1.22610 0.95323 0.98376 0.93912 1.22128 0.96180 0.93330 0.83927 0.87379 1.86665 1.74210 1.34589 1.38849 1.22076 0.82650 0.99082 0.99320 1.44609 1.12236 1.61496 1.18169 1.17376 0.89658 0.90067 0.88804 1.20248 1.00959 1.07779 0.94120 1.20015 0.91771 0.94827 0.97949 1.18999 0.95101 1.07905 0.95305 1.21598 0.92714 1.06982 1.00222 1.21637 1.00130 1.02028 0.85927 1.43789 1.10113 1.49227 1.14832 1.21874 0.91745 1.02635 0.89844 1.17832 0.84287 0.97866 0.95823 1.19106 0.93959 1.11950 1.00524 0.96938 0.93860 0.90897 0.95213 0.99258 0.93008 0.91869 0.94676 0.78960 0.92211 0.91508 0.75960 0.86066 0.86218 0.84121 0.82104 0.91587 0.90246 0.90281 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.31 60.07 0.56 1.34 16 2 N -0.53 -11.19 4.59 -244.37 -1.12 -12.31 16 3 C 0.19 4.95 4.55 -4.98 -0.02 4.93 16 4 C -0.50 -14.22 8.58 -34.44 -0.30 -14.52 16 5 H 0.06 1.80 7.10 -52.49 -0.37 1.43 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 8 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 9 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 12 C 0.03 0.45 4.65 -3.82 -0.02 0.44 16 13 C 0.10 1.59 3.13 -26.74 -0.08 1.51 16 14 H 0.11 1.99 6.73 -51.93 -0.35 1.64 16 15 O -0.54 -8.45 12.98 -35.23 -0.46 -8.91 16 16 C 0.09 1.15 4.56 -4.04 -0.02 1.13 16 17 N -0.74 -9.31 5.63 -58.60 -0.33 -9.64 16 18 C 0.25 3.21 6.65 -83.72 -0.56 2.65 16 19 C -0.21 -2.56 9.23 -39.75 -0.37 -2.92 16 20 C -0.03 -0.31 10.04 -39.67 -0.40 -0.71 16 21 C -0.17 -2.12 6.37 -105.09 -0.67 -2.79 16 22 C -0.19 -1.98 11.08 -37.66 -0.42 -2.40 16 23 C 0.03 0.24 11.29 -16.67 -0.19 0.05 16 24 N -0.49 -5.15 3.18 -121.78 -0.39 -5.54 16 25 C 0.08 0.55 11.03 59.85 0.66 1.21 16 26 C 0.15 1.90 6.80 -84.01 -0.57 1.33 16 27 C -0.23 -2.93 9.79 -39.22 -0.38 -3.31 16 28 H 0.01 0.23 8.08 -51.93 -0.42 -0.19 16 29 H 0.04 0.68 7.85 -51.92 -0.41 0.27 16 30 H 0.07 1.49 7.01 -51.93 -0.36 1.12 16 31 H 0.03 0.82 6.60 -51.93 -0.34 0.47 16 32 H -0.01 -0.29 8.07 -51.93 -0.42 -0.70 16 33 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 35 H 0.04 0.59 8.00 -51.93 -0.42 0.17 16 36 H 0.36 4.37 9.05 45.56 0.41 4.78 16 37 H 0.06 0.65 7.93 -51.93 -0.41 0.23 16 38 H 0.07 0.82 7.93 -51.93 -0.41 0.40 16 39 H 0.40 5.22 8.35 -40.82 -0.34 4.87 16 40 H 0.12 1.32 6.68 -52.49 -0.35 0.97 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.70 16 42 H 0.14 1.14 8.06 -52.48 -0.42 0.72 16 43 H 0.16 0.92 8.06 -52.48 -0.42 0.50 16 44 H 0.07 0.41 8.14 -51.92 -0.42 -0.02 16 45 H 0.08 0.53 8.10 -51.93 -0.42 0.10 16 46 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.11 1.34 8.06 -52.48 -0.42 0.92 16 LS Contribution 385.11 15.07 5.80 5.80 Total: -1.00 -33.37 385.11 -10.33 -43.70 By element: Atomic # 1 Polarization: 13.48 SS G_CDS: -6.69 Total: 6.79 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -2.87 Total: -10.63 kcal Atomic # 7 Polarization: -52.46 SS G_CDS: -1.10 Total: -53.57 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: -0.46 Total: -8.91 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.37 -10.33 -43.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564868611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.633 kcal (2) G-P(sol) polarization free energy of solvation -33.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds