Wall clock time and date at job start Tue Mar 31 2020 11:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46895 * 110.99914 * 2 1 4 4 C 1.50700 * 109.47006 * 66.04705 * 3 2 1 5 5 H 1.07997 * 120.00041 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00066 * 179.97438 * 4 3 2 7 7 N 1.31518 * 119.99956 * 359.97438 * 6 4 3 8 8 Si 1.86793 * 120.00435 * 180.02562 * 6 4 3 9 9 H 1.48505 * 109.46966 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47594 * 119.99797 * 8 6 4 11 11 H 1.48499 * 109.47226 * 240.00455 * 8 6 4 12 12 C 1.46903 * 110.99849 * 236.04276 * 2 1 3 13 13 C 1.52999 * 109.47066 * 199.76749 * 12 2 1 14 14 H 1.09002 * 109.46873 * 302.15942 * 13 12 2 15 15 O 1.42888 * 109.47220 * 62.15927 * 13 12 2 16 16 C 1.52993 * 109.47031 * 182.16521 * 13 12 2 17 17 N 1.46503 * 109.47413 * 180.02562 * 16 13 12 18 18 C 1.39798 * 120.00115 * 179.97438 * 17 16 13 19 19 C 1.39441 * 119.75033 * 359.97438 * 18 17 16 20 20 C 1.36529 * 120.45199 * 179.97438 * 19 18 17 21 21 C 1.39666 * 119.86783 * 0.03066 * 20 19 18 22 22 C 1.46567 * 133.90212 * 179.97438 * 21 20 19 23 23 C 1.34176 * 107.01602 * 180.02562 * 22 21 20 24 24 N 1.37006 * 109.91250 * 359.97438 * 23 22 21 25 25 C 1.46505 * 125.07077 * 179.97438 * 24 23 22 26 26 C 1.37702 * 109.85326 * 0.02562 * 24 23 22 27 27 C 1.38389 * 119.74715 * 179.72586 * 18 17 16 28 28 H 1.08999 * 109.47114 * 54.96599 * 1 2 3 29 29 H 1.09008 * 109.47158 * 174.96608 * 1 2 3 30 30 H 1.08996 * 109.47159 * 294.96052 * 1 2 3 31 31 H 1.09001 * 109.46706 * 186.04444 * 3 2 1 32 32 H 1.08996 * 109.47032 * 306.04539 * 3 2 1 33 33 H 0.96993 * 120.00483 * 179.97438 * 7 6 4 34 34 H 1.08996 * 109.47314 * 319.77214 * 12 2 1 35 35 H 1.09005 * 109.46621 * 79.76803 * 12 2 1 36 36 H 0.96705 * 114.00420 * 60.00380 * 15 13 12 37 37 H 1.09000 * 109.47261 * 299.99729 * 16 13 12 38 38 H 1.09001 * 109.47672 * 59.99645 * 16 13 12 39 39 H 0.97001 * 119.99662 * 359.97438 * 17 16 13 40 40 H 1.07993 * 119.77033 * 0.02562 * 19 18 17 41 41 H 1.08003 * 120.05953 * 179.97438 * 20 19 18 42 42 H 1.08007 * 126.49498 * 0.03604 * 22 21 20 43 43 H 1.08004 * 125.04475 * 179.97438 * 23 22 21 44 44 H 1.09008 * 109.46703 * 89.97915 * 25 24 23 45 45 H 1.09000 * 109.47319 * 209.97428 * 25 24 23 46 46 H 1.08996 * 109.47214 * 329.98044 * 25 24 23 47 47 H 1.08003 * 120.13461 * 359.97152 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0739 1.5114 2.0484 6 6 2.0276 3.3491 1.5290 7 7 2.7137 4.0012 0.6158 8 14 1.5839 4.1864 3.1387 9 1 0.8156 3.2441 3.9914 10 1 2.8258 4.5929 3.8441 11 1 0.7569 5.3879 2.8601 12 6 1.9955 -0.7661 -1.1376 13 6 3.4455 -1.1650 -0.8565 14 1 4.0400 -0.2695 -0.6748 15 8 3.4926 -2.0096 0.2950 16 6 4.0109 -1.9161 -2.0635 17 7 5.3993 -2.2986 -1.7942 18 6 6.1304 -3.0002 -2.7573 19 6 5.5329 -3.3338 -3.9722 20 6 6.2338 -4.0184 -4.9231 21 6 7.5582 -4.3886 -4.6790 22 6 8.5719 -5.1083 -5.4554 23 6 9.6778 -5.1673 -4.6980 24 7 9.4558 -4.5432 -3.4987 25 6 10.4408 -4.4142 -2.4218 26 6 8.1685 -4.0564 -3.4560 27 6 7.4433 -3.3540 -2.4996 28 1 -0.3633 0.5899 -0.8415 29 1 -0.3634 -1.0238 -0.0902 30 1 -0.3633 0.4336 0.9316 31 1 3.0797 1.3443 -0.1082 32 1 1.5611 1.9273 -0.8309 33 1 2.9882 4.9173 0.7778 34 1 1.3932 -1.6631 -1.2814 35 1 1.9552 -0.1531 -2.0381 36 1 2.9843 -2.8273 0.2042 37 1 3.4166 -2.8115 -2.2453 38 1 3.9751 -1.2717 -2.9419 39 1 5.8112 -2.0650 -0.9476 40 1 4.5090 -3.0480 -4.1626 41 1 5.7646 -4.2738 -5.8618 42 1 8.4515 -5.5141 -6.4491 43 1 10.6054 -5.6370 -4.9903 44 1 11.0089 -3.4938 -2.5575 45 1 9.9271 -4.3856 -1.4609 46 1 11.1193 -5.2668 -2.4460 47 1 7.9016 -3.0886 -1.5583 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000564868611.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:07:47 Heat of formation + Delta-G solvation = -0.680605 kcal Electronic energy + Delta-G solvation = -25592.335643 eV Core-core repulsion = 21967.679161 eV Total energy + Delta-G solvation = -3624.656482 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 317.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.02494 -39.82154 -38.60904 -37.12505 -35.27025 -34.61745 -33.30382 -31.51635 -31.00748 -29.42020 -28.62456 -27.20125 -26.64752 -25.28327 -23.80621 -22.97108 -21.89950 -21.69172 -20.82153 -18.62927 -18.12243 -17.94770 -17.45908 -17.05905 -16.62398 -16.54984 -16.11336 -16.00742 -15.54894 -15.29666 -15.15318 -14.96541 -14.51815 -14.36673 -14.15355 -14.01530 -13.89574 -13.65038 -13.46842 -13.13808 -13.10923 -12.92983 -12.60785 -12.55915 -12.54903 -12.32879 -12.27293 -12.16493 -11.77697 -11.55466 -11.32498 -10.86545 -10.80648 -10.62322 -9.93738 -8.95791 -8.71100 -8.21713 -7.92291 -6.30891 0.38590 0.86938 1.38882 1.39952 1.53419 1.94320 1.99740 2.39007 2.50695 3.09168 3.10848 3.27355 3.62709 3.87169 3.90542 4.00746 4.06063 4.13286 4.26842 4.31118 4.44107 4.46252 4.53233 4.56744 4.60271 4.62332 4.69410 4.71844 4.73616 4.79302 4.88222 5.07420 5.08849 5.10762 5.18657 5.21466 5.30343 5.39715 5.64547 5.66953 5.77990 6.00037 6.05651 6.27786 6.33290 6.49464 6.56887 6.64627 6.82659 6.85574 7.00873 7.38669 8.89559 Molecular weight = 317.18amu Principal moments of inertia in cm(-1) A = 0.020656 B = 0.002237 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.208904 B =12515.257634 C =13233.798221 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.208 3.792 4 C -0.521 4.521 5 H 0.061 0.939 6 C -0.001 4.001 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.264 1.264 10 H -0.279 1.279 11 H -0.277 1.277 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.067 0.933 15 O -0.557 6.557 16 C 0.109 3.891 17 N -0.740 5.740 18 C 0.232 3.768 19 C -0.219 4.219 20 C -0.032 4.032 21 C -0.190 4.190 22 C -0.211 4.211 23 C 0.033 3.967 24 N -0.500 5.500 25 C 0.074 3.926 26 C 0.124 3.876 27 C -0.240 4.240 28 H 0.008 0.992 29 H 0.085 0.915 30 H 0.053 0.947 31 H 0.004 0.996 32 H -0.040 1.040 33 H 0.264 0.736 34 H 0.102 0.898 35 H 0.032 0.968 36 H 0.383 0.617 37 H 0.084 0.916 38 H 0.067 0.933 39 H 0.401 0.599 40 H 0.133 0.867 41 H 0.141 0.859 42 H 0.160 0.840 43 H 0.199 0.801 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.106 0.894 47 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.227 -21.136 -11.321 26.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.079 0.921 6 C -0.199 4.199 7 N -0.576 5.576 8 Si 0.793 3.207 9 H -0.188 1.188 10 H -0.205 1.205 11 H -0.203 1.203 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.085 0.915 15 O -0.363 6.363 16 C -0.017 4.017 17 N -0.369 5.369 18 C 0.126 3.874 19 C -0.241 4.241 20 C -0.051 4.051 21 C -0.196 4.196 22 C -0.235 4.235 23 C -0.090 4.090 24 N -0.184 5.184 25 C -0.066 4.066 26 C 0.016 3.984 27 C -0.267 4.267 28 H 0.027 0.973 29 H 0.103 0.897 30 H 0.072 0.928 31 H 0.022 0.978 32 H -0.022 1.022 33 H 0.072 0.928 34 H 0.121 0.879 35 H 0.051 0.949 36 H 0.231 0.769 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.235 0.765 40 H 0.151 0.849 41 H 0.159 0.841 42 H 0.178 0.822 43 H 0.216 0.784 44 H 0.090 0.910 45 H 0.095 0.905 46 H 0.125 0.875 47 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 11.882 -20.669 -10.519 26.058 hybrid contribution -0.498 1.221 0.144 1.326 sum 11.384 -19.448 -10.375 24.809 Atomic orbital electron populations 1.22220 0.87297 1.01022 1.00059 1.61913 1.08012 1.15066 1.41656 1.19407 0.93736 0.83936 0.94719 1.21512 1.34515 0.97398 1.02483 0.92103 1.25919 0.95122 0.98166 1.00676 1.70085 1.39500 1.11865 1.36155 0.85349 0.78050 0.78225 0.79094 1.18765 1.20518 1.20286 1.22746 0.96391 0.99003 0.92063 1.21825 0.95050 0.92475 0.85050 0.91476 1.86625 1.74831 1.35587 1.39220 1.21910 0.82726 0.99563 0.97474 1.44574 1.12377 1.61858 1.18091 1.17532 0.89941 0.90644 0.89241 1.20434 1.01623 1.08057 0.93970 1.20310 0.91769 0.94366 0.98666 1.19471 0.95916 1.08301 0.95878 1.21930 0.92615 1.07644 1.01357 1.22295 1.01145 1.00569 0.84994 1.44125 1.09789 1.48597 1.15906 1.22105 0.91455 1.04239 0.88837 1.18071 0.85689 0.98549 0.96085 1.19235 0.94253 1.12387 1.00871 0.97306 0.89691 0.92834 0.97800 1.02207 0.92753 0.87942 0.94943 0.76898 0.89789 0.91500 0.76461 0.84909 0.84142 0.82210 0.78376 0.90972 0.90529 0.87506 0.86622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.56 9.31 127.69 1.19 2.75 16 2 N -0.54 -22.85 4.59 -927.05 -4.25 -27.10 16 3 C 0.21 11.17 4.55 85.56 0.39 11.56 16 4 C -0.52 -30.08 8.58 25.60 0.22 -29.86 16 5 H 0.06 3.47 7.10 -2.91 -0.02 3.45 16 6 C 0.00 -0.07 5.46 84.65 0.46 0.39 16 7 N -0.94 -57.14 13.29 21.45 0.28 -56.86 16 8 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 9 H -0.26 -11.83 7.11 99.48 0.71 -11.12 16 10 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 12 C 0.03 0.86 4.65 86.30 0.40 1.26 16 13 C 0.12 3.56 3.13 30.59 0.10 3.65 16 14 H 0.07 2.62 6.73 -2.39 -0.02 2.61 16 15 O -0.56 -17.12 12.98 -148.98 -1.93 -19.06 16 16 C 0.11 2.58 4.56 86.38 0.39 2.97 16 17 N -0.74 -18.89 5.63 -339.30 -1.91 -20.80 16 18 C 0.23 6.06 6.65 38.20 0.25 6.31 16 19 C -0.22 -5.23 9.23 22.16 0.20 -5.03 16 20 C -0.03 -0.73 10.04 22.22 0.22 -0.51 16 21 C -0.19 -4.69 6.37 -20.17 -0.13 -4.82 16 22 C -0.21 -4.07 11.08 23.52 0.26 -3.81 16 23 C 0.03 0.54 11.29 82.96 0.94 1.48 16 24 N -0.50 -9.76 3.18 -539.19 -1.72 -11.47 16 25 C 0.07 0.91 11.03 127.77 1.41 2.31 16 26 C 0.12 3.14 6.80 39.01 0.27 3.41 16 27 C -0.24 -6.30 9.79 22.50 0.22 -6.08 16 28 H 0.01 0.32 8.08 -2.39 -0.02 0.30 16 29 H 0.08 2.42 7.85 -2.38 -0.02 2.40 16 30 H 0.05 2.16 7.01 -2.39 -0.02 2.15 16 31 H 0.00 0.23 6.60 -2.39 -0.02 0.21 16 32 H -0.04 -2.31 8.07 -2.39 -0.02 -2.33 16 33 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 34 H 0.10 2.48 7.75 -2.39 -0.02 2.46 16 35 H 0.03 1.07 8.00 -2.38 -0.02 1.05 16 36 H 0.38 8.45 9.05 -74.05 -0.67 7.78 16 37 H 0.08 1.62 7.93 -2.39 -0.02 1.60 16 38 H 0.07 1.60 7.93 -2.39 -0.02 1.58 16 39 H 0.40 10.72 8.35 -92.71 -0.77 9.95 16 40 H 0.13 2.73 6.68 -2.91 -0.02 2.71 16 41 H 0.14 2.46 8.06 -2.91 -0.02 2.43 16 42 H 0.16 2.28 8.06 -2.91 -0.02 2.26 16 43 H 0.20 1.54 8.06 -2.91 -0.02 1.51 16 44 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 45 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16 46 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 47 H 0.12 2.83 8.06 -2.91 -0.02 2.81 16 Total: -1.00 -74.24 385.11 -1.17 -75.41 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: -0.47 Total: 26.69 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 6.80 Total: -14.00 kcal Atomic # 7 Polarization: -108.63 SS G_CDS: -7.59 Total: -116.22 kcal Atomic # 8 Polarization: -17.12 SS G_CDS: -1.93 Total: -19.06 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -74.24 -1.17 -75.41 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000564868611.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.731 kcal (2) G-P(sol) polarization free energy of solvation -74.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds